Experiment set3IT055 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Ceftazidime hydrate 0.15 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -4.8 -6.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2753 -2.9 -5.1 HtrA protease/chaperone protein compare
Pf6N2E2_4155 -2.6 -13.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1056 -2.5 -3.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4162 -2.5 -4.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2294 -2.4 -12.6 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) conserved
Pf6N2E2_620 -2.4 -8.6 BatD compare
Pf6N2E2_5006 -2.3 -11.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4352 -2.2 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5001 -2.1 -2.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4187 -2.1 -5.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5430 -2.1 -9.9 Transglycosylase, Slt family compare
Pf6N2E2_2823 -2.0 -5.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5340 -2.0 -5.2 Stringent starvation protein A compare
Pf6N2E2_2344 -2.0 -10.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) conserved
Pf6N2E2_2825 -1.9 -4.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3696 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_623 -1.9 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_4147 -1.8 -10.0 Fused spore maturation proteins A and B conserved
Pf6N2E2_624 -1.7 -6.4 hypothetical protein PA3071 compare
Pf6N2E2_2824 -1.7 -9.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3261 -1.6 -4.1 hypothetical protein compare
Pf6N2E2_621 -1.6 -7.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4369 -1.6 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3351 -1.5 -4.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3062 -1.5 -5.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2130 -1.5 -10.4 Beta-lactamase (EC 3.5.2.6) conserved
Pf6N2E2_4153 -1.5 -1.9 Sensory box histidine kinase compare
Pf6N2E2_3656 -1.4 -5.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_622 -1.4 -3.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3461 -1.4 -2.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2320 -1.3 -3.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5733 -1.3 -4.4 NLP/P60 family protein compare
Pf6N2E2_5527 -1.3 -2.0 Cold shock protein CspC compare
Pf6N2E2_2474 -1.3 -7.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3460 -1.2 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5406 -1.2 -3.4 FIG00958224: hypothetical protein compare
Pf6N2E2_1116 -1.2 -1.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4414 -1.2 -3.2 FIG00953808: hypothetical protein compare
Pf6N2E2_2277 -1.2 -2.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5536 -1.1 -1.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_74 -1.1 -2.6 DedD protein compare
Pf6N2E2_2940 -1.1 -4.2 OmpA family protein compare
Pf6N2E2_4372 -1.1 -4.6 FIG00460773: hypothetical protein compare
Pf6N2E2_586 -1.1 -6.0 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_4273 -1.1 -5.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5171 -1.1 -8.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5338 -1.1 -5.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4305 -1.1 -1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_3516 -1.0 -2.0 Probable transmembrane protein compare
Pf6N2E2_2473 -1.0 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_625 -1.0 -3.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5339 -1.0 -4.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_193 -1.0 -3.7 hypothetical protein compare
Pf6N2E2_2693 -1.0 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3666 -1.0 -2.9 InaA protein compare
Pf6N2E2_5086 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_647 -1.0 -3.0 General secretion pathway protein G compare
Pf6N2E2_3872 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_2312 -0.9 -1.9 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2181 -0.9 -1.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1279 -0.9 -2.4 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_1238 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_5956 -0.9 -3.5 FIG004453: protein YceG like compare
Pf6N2E2_4599 -0.9 -2.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1625 -0.9 -2.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4272 -0.9 -2.5 putative membrane protein compare
Pf6N2E2_1128 -0.9 -1.5 Two-component response regulator compare
Pf6N2E2_5768 -0.9 -2.8 DNA recombination-dependent growth factor C compare
Pf6N2E2_5679 -0.8 -3.5 hypothetical protein compare
Pf6N2E2_2323 -0.8 -2.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_5428 -0.8 -3.9 DNA recombination and repair protein RecO compare
Pf6N2E2_3713 -0.8 -1.6 Acyl carrier protein compare
Pf6N2E2_3655 -0.8 -6.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2128 -0.8 -3.7 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4197 -0.8 -5.2 DNA recombination and repair protein RecF compare
Pf6N2E2_3240 -0.8 -1.6 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2013 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_919 -0.8 -1.9 FIG00954373: hypothetical protein compare
Pf6N2E2_4059 -0.8 -1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_737 -0.8 -1.1 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_81 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_3505 -0.8 -1.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3687 -0.8 -2.1 FIG00959437: hypothetical protein compare
Pf6N2E2_2605 -0.8 -2.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2335 -0.8 -3.2 Transcriptional regulator, GntR family compare
Pf6N2E2_1838 -0.8 -2.4 6-hexanolactone hydrolase compare
Pf6N2E2_3782 -0.8 -1.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1545 -0.8 -2.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5337 -0.8 -2.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2081 -0.7 -1.4 putative exported protein compare
Pf6N2E2_5544 -0.7 -4.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_6140 -0.7 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2325 -0.7 -3.2 Recombination protein RecR compare
Pf6N2E2_5554 -0.7 -2.9 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_2469 -0.7 -3.1 hypothetical protein compare
Pf6N2E2_4537 -0.7 -1.0 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_4367 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_2479 -0.7 -1.3 Transcription elongation factor GreB compare
Pf6N2E2_4454 -0.7 -3.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5236 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_4159 -0.7 -2.5 Cytochrome c4 compare
Pf6N2E2_4999 -0.7 -2.8 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_724 -0.7 -0.6 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_3328 -0.7 -1.9 transcriptional regulator compare
Pf6N2E2_3515 -0.7 -4.7 Probable transmembrane protein compare
Pf6N2E2_6038 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_1673 -0.7 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_6090 -0.7 -1.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5534 -0.7 -2.6 FIG000859: hypothetical protein YebC compare
Pf6N2E2_943 -0.7 -2.7 Transcriptional regulator, AraC family compare
Pf6N2E2_2274 -0.7 -3.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_194 -0.7 -2.8 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_4624 -0.7 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2144 -0.7 -2.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3306 -0.7 -4.7 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
Pf6N2E2_5704 -0.7 -3.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2317 -0.7 -2.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3786 -0.7 -2.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_2967 -0.7 -1.2 Cold shock protein CspA compare
Pf6N2E2_2724 -0.7 -2.2 Nitroreductase family protein compare
Pf6N2E2_1596 -0.7 -1.0 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_449 -0.7 -1.9 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_4477 -0.7 -2.6 Z-ring-associated protein ZapA compare
Pf6N2E2_1492 -0.7 -1.5 No significant database matches compare
Pf6N2E2_5555 -0.7 -0.9 Cold shock protein CspA compare
Pf6N2E2_5758 -0.7 -1.5 FIG00957314: hypothetical protein compare
Pf6N2E2_4570 -0.7 -1.6 Cation/multidrug efflux pump compare
Pf6N2E2_52 -0.7 -5.1 Excinuclease ABC subunit B compare
Pf6N2E2_4072 -0.7 -2.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4886 -0.6 -4.5 Catalase (EC 1.11.1.6) compare
Pf6N2E2_48 -0.6 -2.0 FIG00955661: hypothetical protein compare
Pf6N2E2_2106 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_1157 -0.6 -2.2 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_3096 -0.6 -1.0 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2318 -0.6 -3.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4888 -0.6 -5.4 Excinuclease ABC subunit A compare
Pf6N2E2_3637 -0.6 -4.0 yqiA-like hydrolase, affects the cell envelope (from data) compare
Pf6N2E2_2706 -0.6 -1.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5111 -0.6 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1682 -0.6 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_4204 -0.6 -0.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_603 -0.6 -1.3 FIG00953934: hypothetical protein compare
Pf6N2E2_2552 -0.6 -3.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1110 -0.6 -2.0 FIG00964414: hypothetical protein compare
Pf6N2E2_766 -0.6 -2.2 Fap protein with C39 domain compare
Pf6N2E2_4353 -0.6 -2.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4710 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_3370 -0.6 -4.1 DNA repair protein RecN compare
Pf6N2E2_2080 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_659 -0.6 -1.0 Transcriptional regulatory protein ompR compare
Pf6N2E2_4092 -0.6 -1.4 FIG00954395: hypothetical protein compare
Pf6N2E2_1649 -0.6 -2.0 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) compare
Pf6N2E2_142 -0.6 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4551 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_1705 -0.6 -1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2217 -0.6 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3024 -0.6 -1.1 Phage tail fibers compare
Pf6N2E2_1399 -0.6 -1.9 Transcriptional regulator, LuxR family compare
Pf6N2E2_1396 -0.6 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_4071 -0.6 -1.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2384 -0.6 -2.2 CmpX compare
Pf6N2E2_4169 -0.6 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5633 -0.6 -4.6 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2306 -0.6 -2.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3475 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_361 -0.6 -1.8 Peptide ABC transporter, permease protein compare
Pf6N2E2_3021 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_2352 -0.6 -1.7 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_2591 -0.6 -2.4 Flagellar assembly protein FliH compare
Pf6N2E2_1319 -0.6 -2.1 FIG074102: hypothetical protein compare
Pf6N2E2_1196 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_2999 -0.6 -1.1 probable tail fiber assembly protein compare
Pf6N2E2_4488 -0.6 -2.6 Ribonucleotide reductase, alpha subunit compare
Pf6N2E2_1441 -0.6 -1.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_648 -0.6 -1.1 General secretion pathway protein K compare
Pf6N2E2_1825 -0.5 -1.7 FOG: EAL domain protein compare
Pf6N2E2_362 -0.5 -2.0 Dipeptide transport system permease protein dppC compare
Pf6N2E2_5660 -0.5 -2.5 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_1312 -0.5 -1.1 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_1463 -0.5 -1.8 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_682 -0.5 -2.1 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_1718 -0.5 -1.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_3698 -0.5 -2.0 Nicotinamidase family protein YcaC compare
Pf6N2E2_5078 -0.5 -1.3 Carbon starvation protein A compare
Pf6N2E2_3284 -0.5 -2.6 Septum formation protein Maf compare
Pf6N2E2_1086 -0.5 -2.8 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching compare
Pf6N2E2_2007 -0.5 -1.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_1875 -0.5 -1.5 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2124 -0.5 -1.3 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5128 -0.5 -1.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_2606 -0.5 -2.6 hypothetical protein compare
Pf6N2E2_3588 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_2278 -0.5 -4.3 Transcription-repair coupling factor compare
Pf6N2E2_4416 -0.5 -1.1 Tyrosine recombinase XerC compare
Pf6N2E2_2413 -0.5 -1.1 FIG074102: hypothetical protein compare
Pf6N2E2_84 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_5178 -0.5 -1.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5623 -0.5 -2.1 YciL protein compare
Pf6N2E2_5594 -0.5 -2.9 Endonuclease III (EC 4.2.99.18) compare


Specific Phenotypes

For 4 genes in this experiment

For stress Ceftazidime hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Ceftazidime hydrate across organisms