Experiment set3IT055 for Methanococcus maripaludis JJ

Compare to:

formate McAA B12 dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS05450 -5.4 -22.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS00235 -5.4 -17.6 hypothetical protein compare
MMJJ_RS04475 -5.2 -5.0 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04200 -5.2 -9.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07360 -5.1 -2.4 TIGR00269 family protein compare
MMJJ_RS06910 -4.8 -3.1 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03875 -4.8 -5.6 CBS domain-containing protein compare
MMJJ_RS05070 -4.8 -2.9 DNA primase catalytic subunit PriS compare
MMJJ_RS06875 -4.7 -3.7 hypothetical protein compare
MMJJ_RS06490 -4.7 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS07665 -4.7 -26.5 formate dehydrogenase subunit alpha compare
MMJJ_RS06255 -4.7 -6.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03895 -4.5 -5.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS05995 -4.4 -3.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS05445 -4.4 -3.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05650 -4.4 -4.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08020 -4.3 -9.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00580 -4.3 -2.7 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS07670 -4.3 -19.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06175 -4.3 -3.5 DUF1743 domain-containing protein compare
MMJJ_RS06695 -4.2 -4.8 amidohydrolase compare
MMJJ_RS04485 -4.2 -12.2 riboflavin synthase compare
MMJJ_RS07720 -4.2 -3.2 UPF0058 family protein compare
MMJJ_RS07660 -4.2 -12.3 carbonic anhydrase compare
MMJJ_RS03840 -4.1 -4.9 DHH family phosphoesterase compare
MMJJ_RS03670 -4.1 -6.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03615 -4.1 -4.6 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08250 -4.0 -8.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS07655 -4.0 -15.4 hypothetical protein compare
MMJJ_RS05380 -4.0 -1.6 hypothetical protein compare
MMJJ_RS09375 -4.0 -2.5 hypothetical protein compare
MMJJ_RS07950 -3.9 -5.2 4Fe-4S binding protein compare
MMJJ_RS03580 -3.9 -4.7 TIGR00303 family protein compare
MMJJ_RS08005 -3.9 -17.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS04970 -3.9 -2.7 DUF655 domain-containing protein compare
MMJJ_RS07380 -3.8 -13.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS02045 -3.8 -4.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05610 -3.8 -6.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS01475 -3.8 -3.0 signal recognition particle-docking protein FtsY compare
MMJJ_RS01360 -3.7 -3.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS00450 -3.7 -2.7 DUF126 domain-containing protein compare
MMJJ_RS06860 -3.7 -3.4 hypothetical protein compare
MMJJ_RS04730 -3.7 -4.0 tyrosine decarboxylase MfnA compare
MMJJ_RS05260 -3.6 -8.1 ATP-grasp domain-containing protein compare
MMJJ_RS05575 -3.6 -5.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06915 -3.6 -17.2 helix-turn-helix domain-containing protein compare
MMJJ_RS03820 -3.5 -5.9 hydrogenase formation protein HypD compare
MMJJ_RS00370 -3.5 -2.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03200 -3.5 -2.7 uroporphyrinogen-III synthase compare
MMJJ_RS01600 -3.5 -4.5 radical SAM protein compare
MMJJ_RS02920 -3.5 -3.4 30S ribosomal protein S27ae compare
MMJJ_RS06040 -3.5 -5.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08625 -3.5 -8.6 magnesium/cobalt transporter CorA compare
MMJJ_RS03150 -3.5 -8.8 2-phospho-L-lactate transferase compare
MMJJ_RS05225 -3.5 -1.8 Gar1/Naf1 family protein compare
MMJJ_RS03125 -3.4 -6.1 GMC oxidoreductase compare
MMJJ_RS08320 -3.4 -3.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04155 -3.4 -9.7 hypothetical protein compare
MMJJ_RS06840 -3.4 -5.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06200 -3.4 -3.2 phosphoglycerate dehydrogenase compare
MMJJ_RS05535 -3.4 -15.2 hypothetical protein compare
MMJJ_RS00205 -3.3 -7.3 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS01935 -3.3 -5.4 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03785 -3.3 -3.4 hypothetical protein compare
MMJJ_RS06155 -3.3 -6.4 phosphatidylglycerophosphatase A compare
MMJJ_RS01750 -3.3 -4.0 ferrous iron transport protein A compare
MMJJ_RS07350 -3.3 -5.0 4Fe-4S binding protein compare
MMJJ_RS06725 -3.3 -15.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05810 -3.3 -9.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00215 -3.3 -3.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS00270 -3.3 -4.6 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07785 -3.3 -3.9 fumarate reductase subunit A compare
MMJJ_RS08660 -3.3 -4.4 acetylornithine transaminase compare
MMJJ_RS00355 -3.2 -3.2 ribonuclease P protein component 4 compare
MMJJ_RS02040 -3.2 -2.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05490 -3.2 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06240 -3.2 -2.8 dihydropteroate synthase-like protein compare
MMJJ_RS05620 -3.2 -6.0 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS00275 -3.2 -3.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS01755 -3.2 -3.2 ferrous iron transport protein B compare
MMJJ_RS02090 -3.2 -5.9 tyramine--L-glutamate ligase compare
MMJJ_RS08850 -3.2 -3.4 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS00570 -3.2 -2.6 ribonuclease P compare
MMJJ_RS08055 -3.1 -7.9 methanogenesis marker 14 protein compare
MMJJ_RS03065 -3.1 -11.9 CBS domain-containing protein compare
MMJJ_RS07635 -3.1 -15.8 response regulator transcription factor compare
MMJJ_RS05950 -3.1 -5.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS02200 -3.1 -9.6 chorismate pyruvate-lyase family protein compare
MMJJ_RS03055 -3.1 -3.5 hypothetical protein compare
MMJJ_RS07705 -3.0 -5.3 GTP-binding protein EngB compare
MMJJ_RS06930 -3.0 -3.9 type II methionyl aminopeptidase compare
MMJJ_RS03295 -3.0 -15.9 PHP domain-containing protein compare
MMJJ_RS07410 -3.0 -5.4 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03800 -3.0 -11.3 aldolase compare
MMJJ_RS04800 -2.9 -5.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07640 -2.9 -21.7 cache domain-containing protein compare
MMJJ_RS04675 -2.9 -7.5 thiamine pyrophosphate-binding protein compare
MMJJ_RS05930 -2.9 -2.3 cell division protein SepF compare
MMJJ_RS05330 -2.9 -3.6 DNA polymerase II large subunit compare
MMJJ_RS04685 -2.9 -10.0 carbamoyltransferase HypF compare
MMJJ_RS06625 -2.9 -2.4 pyruvate synthase subunit PorB compare
MMJJ_RS03620 -2.9 -5.8 DUF2097 domain-containing protein compare
MMJJ_RS08000 -2.8 -8.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS03760 -2.8 -2.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS01690 -2.8 -3.9 methanogenesis marker 12 protein compare
MMJJ_RS00475 -2.8 -3.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06220 -2.8 -5.4 polyamine aminopropyltransferase compare
MMJJ_RS07245 -2.8 -6.6 amidohydrolase family protein compare
MMJJ_RS03060 -2.8 -3.0 methanogenesis marker 7 protein compare
MMJJ_RS08480 -2.8 -8.9 hydroxyethylthiazole kinase compare
MMJJ_RS03190 -2.8 -3.6 phosphopyruvate hydratase compare
MMJJ_RS08065 -2.7 -3.5 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS08080 -2.7 -9.5 TIGR00300 family protein compare
MMJJ_RS03005 -2.7 -5.0 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03830 -2.7 -9.5 CBS domain-containing protein compare
MMJJ_RS00560 -2.7 -3.8 homoisocitrate dehydrogenase compare
MMJJ_RS08855 -2.7 -5.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS01565 -2.7 -6.4 TIGR00267 family protein compare
MMJJ_RS04995 -2.7 -6.4 Tfx family DNA-binding protein compare
MMJJ_RS04615 -2.7 -5.4 methanogenesis marker 3 protein compare
MMJJ_RS06050 -2.7 -12.0 molybdopterin molybdotransferase MoeA compare
MMJJ_RS09175 -2.6 -2.0 anthranilate synthase component I compare
MMJJ_RS02935 -2.6 -4.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS06185 -2.6 -5.6 cobalamin biosynthesis protein compare
MMJJ_RS07650 -2.6 -18.3 formate/nitrite transporter family protein compare
MMJJ_RS05295 -2.6 -11.6 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07000 -2.6 -2.7 TrkH family potassium uptake protein compare
MMJJ_RS06510 -2.6 -3.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS07995 -2.6 -7.9 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS07345 -2.6 -6.8 homocysteine biosynthesis protein compare
MMJJ_RS06375 -2.6 -5.9 UbiX family flavin prenyltransferase compare
MMJJ_RS07155 -2.6 -9.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS02275 -2.6 -4.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06905 -2.5 -2.7 hypothetical protein compare
MMJJ_RS03115 -2.5 -5.7 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06835 -2.5 -11.0 4Fe-4S binding protein compare
MMJJ_RS06805 -2.5 -3.7 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01865 -2.5 -7.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS01870 -2.5 -2.5 methanogenesis marker 15 protein compare
MMJJ_RS07970 -2.5 -2.7 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS06785 -2.5 -7.7 RNA ligase partner protein compare
MMJJ_RS03815 -2.5 -2.7 nascent polypeptide-associated complex protein compare
MMJJ_RS07945 -2.4 -3.1 4Fe-4S binding protein compare
MMJJ_RS03630 -2.4 -11.5 AMP phosphorylase compare
MMJJ_RS06855 -2.4 -1.8 DUF2104 domain-containing protein compare
MMJJ_RS08340 -2.4 -4.0 archaeoflavoprotein AfpA compare
MMJJ_RS00360 -2.4 -3.7 adenosylhomocysteinase compare
MMJJ_RS08330 -2.4 -2.9 SufD family Fe-S cluster assembly protein compare
MMJJ_RS01355 -2.4 -4.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS01345 -2.4 -4.8 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04655 -2.4 -6.8 FAD-dependent oxidoreductase compare
MMJJ_RS03095 -2.4 -3.1 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05190 -2.4 -7.3 gamma carbonic anhydrase family protein compare
MMJJ_RS04790 -2.4 -5.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05655 -2.3 -6.6 HisA/HisF family protein compare
MMJJ_RS06180 -2.3 -3.5 tryptophan--tRNA ligase compare
MMJJ_RS04670 -2.3 -4.7 DUF2117 domain-containing protein compare
MMJJ_RS07840 -2.3 -2.4 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS04520 -2.3 -4.4 coenzyme F430 synthase compare
MMJJ_RS06225 -2.3 -3.0 adenosylmethionine decarboxylase compare
MMJJ_RS01810 -2.3 -2.5 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06880 -2.3 -2.1 EhaG family protein compare
MMJJ_RS09190 -2.3 -2.0 tryptophan synthase subunit beta compare
MMJJ_RS04050 -2.3 -2.7 dihydroneopterin aldolase family protein compare
MMJJ_RS06215 -2.2 -5.3 agmatinase compare
MMJJ_RS03110 -2.2 -4.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06250 -2.2 -3.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05065 -2.2 -4.5 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04985 -2.2 -4.2 glutamyl-tRNA reductase compare
MMJJ_RS01820 -2.2 -6.0 MJ1244 family protein compare
MMJJ_RS08095 -2.2 -4.1 cobyric acid synthase CobQ compare
MMJJ_RS07190 -2.2 -5.0 RtcB family protein compare
MMJJ_RS08430 -2.2 -6.8 small nuclear ribonucleoprotein compare
MMJJ_RS08155 -2.2 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS05375 -2.2 -15.1 radical SAM protein compare
MMJJ_RS03230 -2.2 -3.1 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08620 -2.2 -3.6 DUF373 family protein compare
MMJJ_RS07430 -2.2 -5.2 ribonuclease VapC compare
MMJJ_RS01200 -2.2 -3.6 PRC-barrel domain-containing protein compare
MMJJ_RS00195 -2.2 -3.6 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS00600 -2.1 -3.6 hydroxymethylbilane synthase compare
MMJJ_RS05590 -2.1 -2.5 homoserine dehydrogenase compare
MMJJ_RS05720 -2.1 -3.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS04010 -2.1 -7.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS08840 -2.1 -3.8 calcium/sodium antiporter compare
MMJJ_RS03660 -2.1 -4.8 DUF447 family protein compare
MMJJ_RS01815 -2.1 -3.8 DUF134 domain-containing protein compare
MMJJ_RS04150 -2.1 -3.2 DUF5379 domain-containing protein compare
MMJJ_RS06760 -2.0 -4.8 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS07725 -2.0 -6.2 DNA primase DnaG compare
MMJJ_RS07355 -2.0 -7.1 MoaD/ThiS family protein compare
MMJJ_RS06865 -2.0 -2.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03810 -2.0 -2.7 AIR synthase-related protein compare
MMJJ_RS01880 -2.0 -3.7 RlmE family RNA methyltransferase compare
MMJJ_RS05935 -2.0 -2.4 Era-like GTP-binding protein compare
MMJJ_RS00050 -2.0 -9.8 AAA family ATPase compare
MMJJ_RS04595 -1.9 -5.1 hypothetical protein compare
MMJJ_RS06485 -1.9 -2.0 phosphoglycerate kinase compare
MMJJ_RS03270 -1.9 -1.9 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05540 -1.9 -13.4 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments