Experiment set3IT055 for Dyella japonica UNC79MFTsu3.2
LB with Sodium nitrate 200 mM
Group: stressMedia: LB + Sodium nitrate (200 mM)
Culturing: Dyella79_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 5.2 generations
By: Adam on 17-May-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1771 A6
Specific Phenotypes
For 5 genes in this experiment
For stress Sodium nitrate in Dyella japonica UNC79MFTsu3.2
For stress Sodium nitrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cyanophycin Metabolism | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
| Trehalose Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamine degradation I | 1 | 1 | 1 |
| L-asparagine biosynthesis I | 1 | 1 | 1 |
| trehalose biosynthesis I | 2 | 2 | 1 |
| superpathway of L-asparagine biosynthesis | 2 | 2 | 1 |
| L-glutamate biosynthesis I | 2 | 2 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 3 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 3 | 1 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 1 |
| L-citrulline biosynthesis | 8 | 5 | 1 |
| superpathway of L-citrulline metabolism | 12 | 7 | 1 |