Experiment set3IT054 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Doxycycline hyclate 0.0001 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.1 -4.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3835 -4.7 -8.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5527 -4.4 -3.0 Cold shock protein CspC compare
Pf6N2E2_4362 -4.3 -5.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4353 -4.2 -7.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3666 -4.2 -7.3 InaA protein compare
Pf6N2E2_3060 -4.1 -4.1 Outer membrane protein H precursor compare
Pf6N2E2_6058 -4.0 -7.6 FIG139976: hypothetical protein compare
Pf6N2E2_5430 -4.0 -11.4 Transglycosylase, Slt family compare
Pf6N2E2_3260 -3.9 -6.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5534 -3.8 -7.9 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4075 -3.7 -5.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2973 -3.6 -6.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2823 -3.5 -6.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5987 -3.4 -7.7 OmpA family protein compare
Pf6N2E2_463 -3.4 -8.5 Transcriptional regulatory protein RstA compare
Pf6N2E2_248 -3.3 -11.8 hypothetical protein compare
Pf6N2E2_2261 -3.3 -7.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_2824 -3.3 -12.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5178 -3.3 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3264 -3.2 -4.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_625 -3.2 -6.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3351 -3.2 -6.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_620 -3.1 -10.1 BatD compare
Pf6N2E2_624 -3.1 -8.6 hypothetical protein PA3071 compare
Pf6N2E2_4153 -3.1 -2.9 Sensory box histidine kinase compare
Pf6N2E2_3856 -3.1 -10.2 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) conserved
Pf6N2E2_2967 -3.1 -3.1 Cold shock protein CspA compare
Pf6N2E2_4187 -3.1 -3.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5181 -3.1 -15.4 Paraquat-inducible protein A compare
Pf6N2E2_5219 -3.0 -8.2 FIG140336: TPR domain protein compare
Pf6N2E2_3607 -3.0 -10.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_464 -3.0 -3.5 Sensory histidine kinase QseC compare
Pf6N2E2_3257 -2.9 -5.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5183 -2.9 -17.3 Paraquat-inducible protein B compare
Pf6N2E2_621 -2.9 -9.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4886 -2.9 -11.3 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4417 -2.9 -6.8 Protein of unknown function DUF484 compare
Pf6N2E2_4072 -2.8 -5.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5780 -2.8 -10.3 Periplasmic protease compare
Pf6N2E2_3603 -2.8 -8.6 FIG003573: hypothetical protein compare
Pf6N2E2_6057 -2.8 -5.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3834 -2.8 -7.8 Lipoprotein NlpD compare
Pf6N2E2_3270 -2.7 -6.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3258 -2.7 -6.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2825 -2.6 -3.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4372 -2.6 -7.1 FIG00460773: hypothetical protein compare
Pf6N2E2_5846 -2.6 -14.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein conserved
Pf6N2E2_3833 -2.6 -5.6 hypothetical protein compare
Pf6N2E2_3637 -2.6 -12.9 yqiA-like hydrolase, affects the cell envelope (from data) conserved
Pf6N2E2_5986 -2.6 -3.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4416 -2.5 -4.6 Tyrosine recombinase XerC compare
Pf6N2E2_5340 -2.5 -5.1 Stringent starvation protein A compare
Pf6N2E2_2699 -2.5 -8.2 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO conserved
Pf6N2E2_5182 -2.4 -7.8 Paraquat-inducible protein A compare
Pf6N2E2_4162 -2.4 -3.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5727 -2.4 -6.5 FIG00955360: hypothetical protein compare
Pf6N2E2_5006 -2.4 -10.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_622 -2.4 -4.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3461 -2.4 -2.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_43 -2.3 -7.0 Histidine permease YuiF compare
Pf6N2E2_3753 -2.3 -16.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2753 -2.3 -3.6 HtrA protease/chaperone protein compare
Pf6N2E2_4352 -2.2 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3515 -2.2 -7.8 Probable transmembrane protein compare
Pf6N2E2_623 -2.2 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_2646 -2.1 -2.1 FIG00953416: hypothetical protein compare
Pf6N2E2_5845 -2.1 -6.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein conserved
Pf6N2E2_4181 -2.1 -1.8 Organic hydroperoxide resistance protein compare
Pf6N2E2_4174 -2.1 -11.7 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_5633 -2.1 -13.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3040 -2.1 -9.0 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2474 -2.0 -9.4 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2470 -2.0 -10.4 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_2274 -1.9 -6.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5610 -1.9 -5.7 two-component system sensor protein compare
Pf6N2E2_3039 -1.9 -7.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3665 -1.9 -1.4 serine/threonine protein kinase compare
Pf6N2E2_2473 -1.8 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_3504 -1.8 -10.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2642 -1.8 -8.5 putative patatin-like phospholipase conserved
Pf6N2E2_4399 -1.8 -4.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_3611 -1.8 -2.6 HflC protein compare
Pf6N2E2_4074 -1.7 -8.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4585 -1.7 -11.3 Cell division protein FtsX compare
Pf6N2E2_2471 -1.7 -6.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3516 -1.6 -2.0 Probable transmembrane protein compare
Pf6N2E2_2605 -1.6 -5.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2899 -1.6 -5.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_942 -1.6 -2.6 Mll6465 protein compare
Pf6N2E2_2938 -1.6 -4.4 Outer membrane lipoprotein compare
Pf6N2E2_2010 -1.6 -2.1 hypothetical protein compare
Pf6N2E2_4155 -1.6 -8.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2469 -1.6 -3.9 hypothetical protein compare
Pf6N2E2_4305 -1.5 -1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_2258 -1.5 -8.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5679 -1.5 -6.6 hypothetical protein compare
Pf6N2E2_2845 -1.5 -8.1 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_3373 -1.5 -3.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3062 -1.5 -3.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2752 -1.5 -7.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5771 -1.5 -6.8 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3770 -1.4 -2.3 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4611 -1.4 -4.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2514 -1.4 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4204 -1.4 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5086 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_5961 -1.4 -7.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5235 -1.4 -6.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Pf6N2E2_2467 -1.4 -3.1 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_5015 -1.4 -5.6 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_4479 -1.4 -3.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2080 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_1545 -1.3 -4.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2182 -1.3 -4.0 hypothetical protein compare
Pf6N2E2_5663 -1.3 -4.5 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_529 -1.3 -4.4 FIG00954439: hypothetical protein compare
Pf6N2E2_4068 -1.3 -8.2 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_2067 -1.3 -10.0 cis/trans isomerase compare
Pf6N2E2_2180 -1.3 -2.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_58 -1.3 -2.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4071 -1.2 -4.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3568 -1.2 -3.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5499 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_1660 -1.2 -1.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_3825 -1.2 -3.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5544 -1.2 -6.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3763 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_2479 -1.2 -2.4 Transcription elongation factor GreB compare
Pf6N2E2_4545 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_3612 -1.2 -2.0 HflK protein compare
Pf6N2E2_3762 -1.2 -5.7 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_425 -1.2 -2.1 FIG00957304: hypothetical protein compare
Pf6N2E2_4636 -1.2 -6.2 periplasmic binding protein, putative compare
Pf6N2E2_2325 -1.2 -4.6 Recombination protein RecR compare
Pf6N2E2_4276 -1.2 -4.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3574 -1.1 -7.4 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf6N2E2_1605 -1.1 -4.8 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_2750 -1.1 -6.6 Putative permease PerM (= YfgO) compare
Pf6N2E2_1463 -1.1 -3.0 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_4147 -1.1 -5.2 Fused spore maturation proteins A and B compare
Pf6N2E2_4607 -1.1 -3.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3947 -1.1 -1.5 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_5728 -1.1 -3.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4797 -1.1 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3677 -1.1 -7.4 Sensory box/GGDEF family protein compare
Pf6N2E2_114 -1.1 -1.9 Polysaccharide biosynthesis protein compare
Pf6N2E2_3466 -1.1 -1.7 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_1983 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_3876 -1.1 -3.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5170 -1.1 -7.6 FIG00955330: hypothetical protein compare
Pf6N2E2_5402 -1.1 -5.2 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_2472 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_5785 -1.0 -2.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1293 -1.0 -1.5 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_2213 -1.0 -4.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2340 -1.0 -3.6 Transcriptional regulator, GntR family compare
Pf6N2E2_3144 -1.0 -4.8 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_1676 -1.0 -2.2 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_1984 -1.0 -2.4 probable exported protein STY4558 compare
Pf6N2E2_5919 -1.0 -1.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_4414 -1.0 -2.8 FIG00953808: hypothetical protein compare
Pf6N2E2_1606 -1.0 -3.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2746 -1.0 -3.9 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2218 -1.0 -3.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2758 -1.0 -7.3 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_2852 -1.0 -5.0 GGDEF domain/EAL domain protein compare
Pf6N2E2_5664 -1.0 -3.9 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_5611 -1.0 -4.4 SAM-dependent methyltransferases compare
Pf6N2E2_4009 -1.0 -5.8 GGDEF domain protein compare
Pf6N2E2_5252 -1.0 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_4579 -1.0 -2.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4273 -1.0 -5.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_156 -1.0 -1.8 Carbon storage regulator compare
Pf6N2E2_5156 -1.0 -2.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1081 -1.0 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_5754 -1.0 -6.5 Long-chain fatty acid transport protein compare
Pf6N2E2_2128 -1.0 -2.6 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5668 -0.9 -2.8 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3826 -0.9 -3.3 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2013 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_3642 -0.9 -4.9 lipoprotein, putative compare
Pf6N2E2_4821 -0.9 -3.9 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf6N2E2_3219 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_2588 -0.9 -2.6 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1215 -0.9 -1.8 probable membrane protein YPO2362 compare
Pf6N2E2_3855 -0.9 -3.9 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
Pf6N2E2_2476 -0.9 -2.5 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_601 -0.9 -3.2 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_3569 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_5860 -0.9 -4.8 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_2152 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3249 -0.9 -5.6 Zn-dependent protease with chaperone function compare
Pf6N2E2_5671 -0.9 -2.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3326 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_440 -0.9 -1.8 FIG00954920: hypothetical protein compare
Pf6N2E2_1987 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_1656 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_1140 -0.9 -2.9 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_2386 -0.9 -2.8 Magnesium and cobalt transport protein CorA compare


Specific Phenotypes

For 26 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas fluorescens FW300-N2E2

For stress Doxycycline hyclate across organisms