Experiment set3IT054 for Methanococcus maripaludis JJ

Compare to:

formate McAA pantothenate dropout

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.9 14.4 hypothetical protein compare
MMJJ_RS08935 +1.0 1.8 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS04005 +0.9 6.7 acetate--CoA ligase family protein compare
MMJJ_RS08830 +0.9 3.4 hypothetical protein compare
MMJJ_RS07750 +0.8 1.7 class III signal peptide-containing protein compare
MMJJ_RS09120 +0.8 1.4 aspartate kinase compare
MMJJ_RS04545 +0.8 2.4 PadR family transcriptional regulator compare
MMJJ_RS08225 +0.7 4.4 peptidylprolyl isomerase compare
MMJJ_RS06505 +0.7 3.1 prephenate dehydratase compare
MMJJ_RS03725 +0.6 2.5 sulfurtransferase TusA family protein compare
MMJJ_RS01590 +0.6 1.9 adenine phosphoribosyltransferase compare
MMJJ_RS06680 +0.6 3.3 DUF366 family protein compare
MMJJ_RS06675 +0.6 4.4 TIGR01212 family radical SAM protein compare
MMJJ_RS07185 +0.6 1.4 DUF371 domain-containing protein compare
MMJJ_RS07230 +0.6 3.4 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07795 +0.6 3.1 cupin domain-containing protein compare
MMJJ_RS07235 +0.6 4.5 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS07025 +0.5 2.9 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS06460 +0.5 3.2 cytochrome c compare
MMJJ_RS07260 +0.5 3.1 PspC domain-containing protein compare
MMJJ_RS07225 +0.5 3.6 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS07595 +0.5 2.6 hypothetical protein compare
MMJJ_RS07220 +0.5 4.0 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS07015 +0.5 1.0 PFL family protein compare
MMJJ_RS01140 +0.5 1.9 helix-turn-helix domain-containing protein compare
MMJJ_RS04345 +0.5 2.2 DUF2080 family transposase-associated protein compare
MMJJ_RS06090 +0.5 2.9 hypothetical protein compare
MMJJ_RS05040 +0.5 3.2 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS06385 +0.5 2.3 hypothetical protein compare
MMJJ_RS04375 +0.5 1.4 hypothetical protein compare
MMJJ_RS06640 +0.5 3.3 YfcE family phosphodiesterase compare
MMJJ_RS01785 +0.5 0.8 50S ribosomal protein L14e compare
MMJJ_RS04955 +0.5 3.2 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS06515 +0.4 3.4 ribonuclease III compare
MMJJ_RS05975 +0.4 3.1 sulfurtransferase TusA family protein compare
MMJJ_RS06190 +0.4 3.4 7-cyano-7-deazaguanine synthase compare
MMJJ_RS06950 +0.4 3.2 4-demethylwyosine synthase TYW1 compare
MMJJ_RS01790 +0.4 3.1 pyridoxamine 5'-phosphate oxidase family protein compare
MMJJ_RS06470 +0.4 3.1 tripartite tricarboxylate transporter permease compare
MMJJ_RS09365 +0.4 1.2 hypothetical protein compare
MMJJ_RS01670 +0.4 1.9 hypothetical protein compare
MMJJ_RS07240 +0.4 3.7 MBL fold metallo-hydrolase compare
MMJJ_RS06810 +0.4 3.2 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS03605 +0.4 1.6 TIGR00297 family protein compare
MMJJ_RS06800 +0.4 2.0 prefoldin subunit alpha compare
MMJJ_RS06590 +0.4 3.3 sodium:alanine symporter family protein compare
MMJJ_RS07205 +0.4 2.1 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS07920 +0.4 2.8 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS07270 +0.4 2.6 ribonuclease HII compare
MMJJ_RS08100 +0.4 2.3 hypothetical protein compare
MMJJ_RS06770 +0.4 3.0 hypothetical protein compare
MMJJ_RS06440 +0.4 2.8 DUF4870 domain-containing protein compare
MMJJ_RS04105 +0.4 3.1 prepilin peptidase compare
MMJJ_RS06280 +0.4 3.1 hypothetical protein compare
MMJJ_RS06205 +0.4 2.5 EamA family transporter compare
MMJJ_RS08445 +0.4 1.8 cell division ATPase MinD compare
MMJJ_RS06430 +0.4 2.2 haloacid dehalogenase compare
MMJJ_RS09405 +0.4 1.1 hypothetical protein compare
MMJJ_RS02270 +0.4 2.4 HEPN domain-containing protein compare
MMJJ_RS07210 +0.4 2.7 AmmeMemoRadiSam system protein B compare
MMJJ_RS09295 +0.4 0.5 hypothetical protein compare
MMJJ_RS06500 +0.4 2.6 class I SAM-dependent methyltransferase compare
MMJJ_RS05685 +0.4 2.4 class III signal peptide-containing protein compare
MMJJ_RS06740 +0.3 1.8 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS06445 +0.3 3.0 hypothetical protein compare
MMJJ_RS05525 +0.3 1.8 GTP-binding protein compare
MMJJ_RS05700 +0.3 2.3 metallophosphoesterase compare
MMJJ_RS06455 +0.3 2.5 YeeE/YedE family protein compare
MMJJ_RS07450 +0.3 2.0 hypothetical protein compare
MMJJ_RS04815 +0.3 1.8 TIM barrel protein compare
MMJJ_RS03835 +0.3 1.2 DUF504 domain-containing protein compare
MMJJ_RS01855 +0.3 2.4 MBL fold metallo-hydrolase compare
MMJJ_RS06960 +0.3 2.9 CAP domain-containing protein compare
MMJJ_RS07480 +0.3 2.6 FAD-dependent oxidoreductase compare
MMJJ_RS06085 +0.3 1.4 proteasome assembly chaperone family protein compare
MMJJ_RS08195 +0.3 1.9 DUF4186 domain-containing protein compare
MMJJ_RS06685 +0.3 2.7 S-layer protein compare
MMJJ_RS06790 +0.3 2.6 nucleotidyltransferase family protein compare
MMJJ_RS01035 +0.3 1.6 hypothetical protein compare
MMJJ_RS06130 +0.3 1.6 hypothetical protein compare
MMJJ_RS08365 +0.3 2.1 DsrE family protein compare
MMJJ_RS06100 +0.3 2.0 rubrerythrin compare
MMJJ_RS04350 +0.3 1.8 hypothetical protein compare
MMJJ_RS05530 +0.3 1.1 roadblock/LC7 domain-containing protein compare
MMJJ_RS00405 +0.3 2.1 flavodoxin family protein compare
MMJJ_RS07495 +0.3 1.8 4Fe-4S binding protein compare
MMJJ_RS06765 +0.3 2.4 hypothetical protein compare
MMJJ_RS06045 +0.3 2.3 hypothetical protein compare
MMJJ_RS06520 +0.3 2.1 TldD/PmbA family protein compare
MMJJ_RS09065 +0.3 2.0 hypothetical protein compare
MMJJ_RS07810 +0.3 1.9 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS04215 +0.3 2.4 DMT family transporter compare
MMJJ_RS03595 +0.3 1.7 hypothetical protein compare
MMJJ_RS07815 +0.3 2.0 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS06735 +0.3 2.0 cobalt ECF transporter T component CbiQ compare
MMJJ_RS02180 +0.3 1.4 DHH family phosphoesterase compare
MMJJ_RS07365 +0.3 2.2 CatB-related O-acetyltransferase compare
MMJJ_RS05390 +0.3 2.0 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS06580 +0.3 2.2 alanine dehydrogenase compare
MMJJ_RS00145 +0.3 2.1 aquaporin family protein compare
MMJJ_RS06275 +0.3 0.9 hypothetical protein compare
MMJJ_RS09360 +0.3 1.7 hypothetical protein compare
MMJJ_RS03375 +0.3 1.1 hypothetical protein compare
MMJJ_RS02160 +0.3 1.7 amino acid ABC transporter permease compare
MMJJ_RS07010 +0.3 1.3 preprotein translocase subunit Sec61beta compare
MMJJ_RS06585 +0.3 1.7 alanine racemase compare
MMJJ_RS04585 +0.3 1.7 phenylacetate--CoA ligase compare
MMJJ_RS07800 +0.3 2.1 AMP-binding protein compare
MMJJ_RS08670 +0.3 2.0 phosphate signaling complex protein PhoU compare
MMJJ_RS06285 +0.3 1.7 YchF/TatD family DNA exonuclease compare
MMJJ_RS05990 +0.3 1.5 phosphatase PAP2 family protein compare
MMJJ_RS06120 +0.3 1.7 DUF4013 domain-containing protein compare
MMJJ_RS03525 +0.3 1.9 2-hydroxyacyl-CoA dehydratase family protein compare
MMJJ_RS03290 +0.3 2.1 amidohydrolase compare
MMJJ_RS07215 +0.3 2.0 TIGR00341 family protein compare
MMJJ_RS02230 +0.3 2.1 hypothetical protein compare
MMJJ_RS08305 +0.3 1.4 peroxiredoxin compare
MMJJ_RS06450 +0.2 1.7 DUF3343 domain-containing protein compare
MMJJ_RS07445 +0.2 1.8 RlmF-related methyltransferase compare
MMJJ_RS07760 +0.2 1.4 GNAT family N-acetyltransferase compare
MMJJ_RS06210 +0.2 1.6 hypothetical protein compare
MMJJ_RS04625 +0.2 1.7 SLC13 family permease compare
MMJJ_RS07835 +0.2 1.4 UPF0489 family protein compare
MMJJ_RS04610 +0.2 0.9 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS07200 +0.2 1.9 MFS transporter compare
MMJJ_RS08015 +0.2 1.3 HAD family hydrolase compare
MMJJ_RS01010 +0.2 2.2 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS07820 +0.2 1.8 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS08525 +0.2 1.0 peptidylprolyl isomerase compare
MMJJ_RS07915 +0.2 1.2 CBS domain-containing protein compare
MMJJ_RS06235 +0.2 1.8 IGHMBP2 family helicase compare
MMJJ_RS05235 +0.2 2.0 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS07695 +0.2 1.8 glycoside hydrolase family 15 protein compare
MMJJ_RS05580 +0.2 1.2 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS06535 +0.2 1.8 UPF0104 family protein compare
MMJJ_RS09325 +0.2 1.2 hypothetical protein compare
MMJJ_RS01405 +0.2 0.2 proline--tRNA ligase compare
MMJJ_RS05835 +0.2 1.8 bis-aminopropyl spermidine synthase family protein compare
MMJJ_RS06710 +0.2 1.7 TldD/PmbA family protein compare
MMJJ_RS03040 +0.2 1.5 lactate utilization protein compare
MMJJ_RS08400 +0.2 0.7 CoB--CoM heterodisulfide reductase subunit C compare
MMJJ_RS01825 +0.2 1.0 DNA repair and recombination protein RadB compare
MMJJ_RS05410 +0.2 1.4 RecB-family nuclease compare
MMJJ_RS02170 +0.2 1.3 2-thiouracil desulfurase family protein compare
MMJJ_RS07005 +0.2 0.7 transcription factor S compare
MMJJ_RS01955 +0.2 1.8 hypothetical protein compare
MMJJ_RS09255 +0.2 0.7 hypothetical protein compare
MMJJ_RS06115 +0.2 1.5 pyruvate kinase compare
MMJJ_RS08685 +0.2 1.5 phosphate ABC transporter permease subunit PstC compare
MMJJ_RS03515 +0.2 1.3 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS05500 +0.2 1.8 hypothetical protein compare
MMJJ_RS03175 +0.2 1.2 zinc metalloprotease HtpX compare
MMJJ_RS08270 +0.2 1.7 iron ABC transporter substrate-binding protein compare
MMJJ_RS07610 +0.2 1.3 DUF2119 domain-containing protein compare
MMJJ_RS09015 +0.2 1.3 SPFH domain-containing protein compare
MMJJ_RS08665 +0.2 1.7 transcriptional regulator compare
MMJJ_RS03775 +0.2 0.9 50S ribosomal protein L15e compare
MMJJ_RS08350 +0.2 1.7 heavy metal translocating P-type ATPase compare
MMJJ_RS04390 +0.2 1.6 rhomboid family intramembrane serine protease compare
MMJJ_RS07885 +0.2 1.4 NERD domain-containing protein compare
MMJJ_RS05520 +0.2 1.5 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS00640 +0.2 1.6 glycine betaine ABC transporter substrate-binding protein compare
MMJJ_RS00155 +0.2 1.6 DUF2193 domain-containing protein compare
MMJJ_RS02895 +0.2 1.4 ATP-binding protein compare
MMJJ_RS04525 +0.2 0.9 hypothetical protein compare
MMJJ_RS02110 +0.2 1.0 carboxymuconolactone decarboxylase family protein compare
MMJJ_RS05510 +0.2 1.4 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS05660 +0.2 1.1 sulfopyruvate decarboxylase subunit beta compare
MMJJ_RS07255 +0.2 1.6 hypothetical protein compare
MMJJ_RS05150 +0.2 1.3 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06745 +0.2 1.1 energy-coupling factor ABC transporter permease compare
MMJJ_RS04855 +0.2 1.3 ECF transporter S component compare
MMJJ_RS04500 +0.2 1.2 hypothetical protein compare
MMJJ_RS08300 +0.2 1.4 hypothetical protein compare
MMJJ_RS03330 +0.2 1.3 hypothetical protein compare
MMJJ_RS05340 +0.2 1.4 AAA family ATPase compare
MMJJ_RS03850 +0.2 0.7 nucleoside-diphosphate kinase compare
MMJJ_RS06055 +0.2 1.3 S-methyl-5-thioribose-1-phosphate isomerase compare
MMJJ_RS07590 +0.2 1.3 flap endonuclease-1 compare
MMJJ_RS05695 +0.2 0.7 class III signal peptide-containing protein compare
MMJJ_RS03015 +0.2 1.3 Ig-like domain-containing protein compare
MMJJ_RS04850 +0.2 1.1 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS08410 +0.2 0.4 CBS domain-containing protein compare
MMJJ_RS02880 +0.2 1.3 hypothetical protein compare
MMJJ_RS04870 +0.2 0.3 tRNA-Asp compare
MMJJ_RS09005 +0.2 1.5 N-6 DNA methylase compare
MMJJ_RS03575 +0.2 0.8 NUDIX hydrolase compare
MMJJ_RS01375 +0.2 1.2 tetrahydromethanopterin:alpha-L-glutamate ligase compare
MMJJ_RS04420 +0.2 1.3 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family compare
MMJJ_RS05715 +0.2 1.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS07865 +0.2 0.9 zinc ribbon domain-containing protein compare
MMJJ_RS06080 +0.2 1.3 serine/threonine protein kinase compare
MMJJ_RS05585 +0.2 1.2 hypothetical protein compare
MMJJ_RS07890 +0.2 1.0 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS08310 +0.2 0.9 ZIP family metal transporter compare
MMJJ_RS08485 +0.2 0.9 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS00900 +0.2 0.7 PC4/YdbC family ssDNA-binding protein compare
MMJJ_RS01210 +0.2 0.5 hypothetical protein compare
MMJJ_RS08455 +0.2 0.7 tetratricopeptide repeat protein compare
MMJJ_RS08810 +0.2 0.2 DUF4040 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments