Experiment set3IT054 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Sodium nitrate 150 mM

200 most important genes:

  gene name fitness t score description  
ABZR86_RS18490 -6.2 -6.0 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS09935 -6.0 -4.1 DUF4105 domain-containing protein compare
ABZR86_RS18585 -5.2 -14.5 polysaccharide biosynthesis/export family protein compare
ABZR86_RS12885 -4.7 -3.3 magnesium-translocating P-type ATPase compare
ABZR86_RS18545 -4.7 -12.2 hypothetical protein compare
ABZR86_RS20775 -4.6 -7.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS09885 -4.4 -3.1 trypsin-like peptidase domain-containing protein compare
ABZR86_RS07215 -4.2 -5.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS18600 -3.9 -20.9 YjbH domain-containing protein compare
ABZR86_RS18615 -3.6 -5.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS18495 -3.6 -13.9 polysaccharide biosynthesis tyrosine autokinase compare
ABZR86_RS09075 -3.5 -2.1 NrsF family protein compare
ABZR86_RS06580 -3.4 -2.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS13355 -3.4 -15.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS12595 -3.3 -2.5 cell division ATP-binding protein FtsE compare
ABZR86_RS12590 -3.1 -16.1 permease-like cell division protein FtsX compare
ABZR86_RS18705 -2.8 -2.6 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS10945 -2.8 -8.0 trehalose-phosphatase compare
ABZR86_RS11485 -2.7 -5.8 hypothetical protein compare
ABZR86_RS18450 -2.7 -4.8 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS12410 -2.6 -4.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS18595 -2.5 -6.2 capsule biosynthesis GfcC family protein compare
ABZR86_RS02215 -2.5 -4.8 FHA domain-containing protein compare
ABZR86_RS07180 -2.5 -5.1 RNA polymerase sigma factor RpoE compare
ABZR86_RS19235 -2.5 -4.7 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS07265 -2.4 -7.5 protein phosphatase 2C domain-containing protein compare
ABZR86_RS01885 -2.4 -1.7 DUF5668 domain-containing protein compare
ABZR86_RS06780 -2.3 -2.9 CvpA family protein compare
ABZR86_RS05550 -2.3 -5.0 lipopolysaccharide assembly protein LapB compare
ABZR86_RS17485 -2.3 -10.4 septal ring lytic transglycosylase RlpA family protein compare
ABZR86_RS15640 -2.2 -2.6 orotate phosphoribosyltransferase compare
ABZR86_RS15460 -2.2 -1.8 type I glutamate--ammonia ligase compare
ABZR86_RS09840 -2.2 -1.6 Trm112 family protein compare
ABZR86_RS18675 -2.1 -5.8 phosphoglycerate kinase compare
ABZR86_RS07665 -2.1 -4.0 exodeoxyribonuclease V subunit beta compare
ABZR86_RS13385 -2.1 -11.3 lipid-binding SYLF domain-containing protein compare
ABZR86_RS12215 -2.0 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS09450 -2.0 -4.4 winged helix-turn-helix transcriptional regulator compare
ABZR86_RS15670 -2.0 -13.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS00685 -2.0 -2.5 carbon storage regulator CsrA compare
ABZR86_RS05700 -1.9 -3.6 SsrA-binding protein SmpB compare
ABZR86_RS10710 -1.9 -2.1 transcriptional regulator NrdR compare
ABZR86_RS11985 -1.9 -5.7 cell division protein ZapA compare
ABZR86_RS12835 -1.8 -5.2 DedA family protein compare
ABZR86_RS10830 -1.8 -3.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS13430 -1.8 -3.7 DUF4156 domain-containing protein compare
ABZR86_RS13380 -1.8 -2.1 Sec-independent protein translocase subunit TatA compare
ABZR86_RS09535 -1.8 -1.8 preprotein translocase subunit YajC compare
ABZR86_RS10840 -1.8 -3.7 Holliday junction branch migration protein RuvA compare
ABZR86_RS13515 -1.7 -5.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS18775 -1.7 -1.7 nucleotidyltransferase family protein compare
ABZR86_RS00660 -1.7 -5.7 recombinase RecA compare
ABZR86_RS13865 -1.7 -1.4 DNA topoisomerase I compare
ABZR86_RS11655 -1.6 -6.7 SLC13 family permease compare
ABZR86_RS17480 -1.6 -7.6 lytic murein transglycosylase B compare
ABZR86_RS07660 -1.6 -4.4 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS02195 -1.6 -7.0 ATP-dependent Clp protease adapter ClpS compare
ABZR86_RS09660 -1.6 -2.6 MerR family transcriptional regulator compare
ABZR86_RS02200 -1.5 -10.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS12605 -1.5 -3.0 thioredoxin TrxA compare
ABZR86_RS01755 -1.5 -5.6 helix-turn-helix domain-containing protein compare
ABZR86_RS12005 -1.5 -1.2 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS12415 -1.5 -4.6 NADP-dependent malic enzyme compare
ABZR86_RS11815 -1.5 -5.5 penicillin-binding protein 1A compare
ABZR86_RS13880 -1.5 -3.1 peptide deformylase compare
ABZR86_RS12760 -1.4 -7.8 LTA synthase family protein compare
ABZR86_RS07310 -1.4 -5.3 tRNA-Val compare
ABZR86_RS17095 -1.4 -6.0 protein-disulfide reductase DsbD compare
ABZR86_RS06690 -1.4 -3.5 acireductone synthase compare
ABZR86_RS20600 -1.4 -8.0 ferrous iron transporter B compare
ABZR86_RS18960 -1.4 -5.3 TetR/AcrR family transcriptional regulator compare
ABZR86_RS21480 -1.4 -5.5 arginase family protein compare
ABZR86_RS11970 -1.3 -7.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR86_RS06265 -1.3 -5.5 3-deoxy-D-manno-octulosonic acid kinase compare
ABZR86_RS21345 -1.3 -8.7 GNAT family N-acetyltransferase compare
ABZR86_RS08415 -1.3 -3.5 OmpA family protein compare
ABZR86_RS18590 -1.3 -4.4 YjbF family lipoprotein compare
ABZR86_RS21335 -1.3 -1.2 response regulator transcription factor compare
ABZR86_RS18725 -1.3 -2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR86_RS11825 -1.3 -1.9 citrate synthase compare
ABZR86_RS06590 -1.3 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS06190 -1.2 -3.3 YceD family protein compare
ABZR86_RS06630 -1.2 -1.1 phosphopyruvate hydratase compare
ABZR86_RS18780 -1.2 -2.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS13370 -1.2 -6.7 twin-arginine translocase subunit TatC compare
ABZR86_RS13935 -1.2 -4.6 lipid A biosynthesis acyltransferase compare
ABZR86_RS20595 -1.2 -1.7 DUF6587 family protein compare
ABZR86_RS14580 -1.2 -2.5 DUF3224 domain-containing protein compare
ABZR86_RS19805 -1.2 -4.0 HPr(Ser) kinase/phosphatase compare
ABZR86_RS21355 -1.2 -3.8 septum site-determining protein MinD compare
ABZR86_RS05445 -1.1 -2.0 helix-turn-helix domain-containing protein compare
ABZR86_RS16525 -1.1 -6.0 alpha/beta fold hydrolase compare
ABZR86_RS18655 -1.1 -5.5 transketolase compare
ABZR86_RS19225 -1.1 -4.0 site-specific tyrosine recombinase XerD compare
ABZR86_RS21725 -1.1 -7.8 YhdP family protein compare
ABZR86_RS14930 -1.1 -6.7 exodeoxyribonuclease III compare
ABZR86_RS07495 -1.1 -1.9 hypothetical protein compare
ABZR86_RS03560 -1.1 -3.2 molybdenum cofactor guanylyltransferase compare
ABZR86_RS17075 -1.1 -3.9 four helix bundle protein compare
ABZR86_RS04495 -1.1 -1.2 hypothetical protein compare
ABZR86_RS07560 -1.1 -6.0 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS05910 -1.1 -4.0 cupin domain-containing protein compare
ABZR86_RS14085 -1.1 -2.4 hypothetical protein compare
ABZR86_RS06785 -1.0 -3.4 SPOR domain-containing protein compare
ABZR86_RS10530 -1.0 -1.3 H-NS histone family protein compare
ABZR86_RS10480 -1.0 -3.3 3-dehydroquinate synthase compare
ABZR86_RS18735 -1.0 -6.0 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS08015 -1.0 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS19710 -1.0 -8.5 glycosyltransferase family 2 protein compare
ABZR86_RS06030 -1.0 -1.2 transcription termination factor NusA compare
ABZR86_RS06270 -1.0 -5.3 glycosyltransferase family 9 protein compare
ABZR86_RS08250 -1.0 -2.6 phosphate signaling complex protein PhoU compare
ABZR86_RS11885 -1.0 -3.2 ATP-binding cassette domain-containing protein compare
ABZR86_RS20820 -1.0 -1.2 CsbD family protein compare
ABZR86_RS02165 -1.0 -9.2 aconitate hydratase AcnA compare
ABZR86_RS19935 -1.0 -1.8 hypothetical protein compare
ABZR86_RS20605 -1.0 -1.8 FeoA family protein compare
ABZR86_RS07300 -1.0 -6.3 SurA N-terminal domain-containing protein compare
ABZR86_RS08435 -0.9 -3.1 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS18690 -0.9 -4.2 DUF4398 domain-containing protein compare
ABZR86_RS07340 -0.9 -2.1 tRNA-Leu compare
ABZR86_RS12995 -0.9 -4.6 ankyrin repeat domain-containing protein compare
ABZR86_RS05820 -0.9 -2.6 GntR family transcriptional regulator compare
ABZR86_RS18640 -0.9 -5.4 class I fructose-bisphosphate aldolase compare
ABZR86_RS03535 -0.9 -2.8 GTP 3',8-cyclase MoaA compare
ABZR86_RS13540 -0.9 -5.3 beta-ketoacyl synthase chain length factor compare
ABZR86_RS13565 -0.9 -6.4 acyltransferase compare
ABZR86_RS07165 -0.9 -7.0 translation elongation factor 4 compare
ABZR86_RS05440 -0.9 -5.1 tetratricopeptide repeat protein compare
ABZR86_RS17210 -0.9 -7.1 TolC family outer membrane protein compare
ABZR86_RS17090 -0.9 -2.9 TlpA disulfide reductase family protein compare
ABZR86_RS13855 -0.9 -6.5 AMP-binding protein compare
ABZR86_RS06275 -0.9 -3.4 DUF6165 family protein compare
ABZR86_RS13895 -0.9 -7.0 glycosyltransferase family 39 protein compare
ABZR86_RS21435 -0.9 -4.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS19980 -0.9 -2.5 AsmA family protein compare
ABZR86_RS11880 -0.8 -2.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS02310 -0.8 -2.6 hypothetical protein compare
ABZR86_RS21320 -0.8 -4.9 ABC transporter permease subunit compare
ABZR86_RS07160 -0.8 -3.3 signal peptidase I compare
ABZR86_RS02180 -0.8 -2.7 high frequency lysogenization protein HflD compare
ABZR86_RS15695 -0.8 -1.0 23S ribosomal RNA compare
ABZR86_RS13110 -0.8 -3.4 type II secretion system inner membrane protein GspF compare
ABZR86_RS14100 -0.8 -4.4 DNA adenine methylase compare
ABZR86_RS02185 -0.8 -4.6 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS19715 -0.8 -4.8 Dps family protein compare
ABZR86_RS12280 -0.8 -1.5 dihydrolipoyl dehydrogenase compare
ABZR86_RS00645 -0.8 -4.5 FecR domain-containing protein compare
ABZR86_RS21130 -0.8 -2.3 PadR family transcriptional regulator compare
ABZR86_RS05860 -0.8 -2.4 adenylosuccinate lyase compare
ABZR86_RS16035 -0.8 -3.8 periplasmic nitrate reductase, NapE protein compare
ABZR86_RS18760 -0.8 -5.0 glycosyltransferase compare
ABZR86_RS14700 -0.8 -3.0 glucose-6-phosphate dehydrogenase compare
ABZR86_RS04640 -0.8 -3.0 FecR domain-containing protein compare
ABZR86_RS12450 -0.8 -4.7 Grx4 family monothiol glutaredoxin compare
ABZR86_RS12205 -0.8 -4.1 co-chaperone DjlA compare
ABZR86_RS15885 -0.7 -2.0 3-oxoacyl-ACP reductase family protein compare
ABZR86_RS08890 -0.7 -0.9 hypothetical protein compare
ABZR86_RS06355 -0.7 -2.9 folate-binding protein YgfZ compare
ABZR86_RS20190 -0.7 -1.6 flagellar export protein FliJ compare
ABZR86_RS15330 -0.7 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS11280 -0.7 -4.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR86_RS20700 -0.7 -0.9 transcriptional repressor AgaR compare
ABZR86_RS16040 -0.7 -0.7 molybdopterin-dependent oxidoreductase compare
ABZR86_RS03555 -0.7 -4.6 molybdenum cofactor biosynthesis protein MoaE compare
ABZR86_RS03570 -0.7 -5.6 extracellular solute-binding protein compare
ABZR86_RS18140 -0.7 -1.3 hypothetical protein compare
ABZR86_RS00005 -0.7 -1.1 hypothetical protein compare
ABZR86_RS03435 -0.7 -3.9 GTP cyclohydrolase II compare
ABZR86_RS20570 -0.7 -3.0 acetyl-CoA C-acyltransferase compare
ABZR86_RS18720 -0.7 -2.1 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS16435 -0.7 -1.7 fimbria/pilus periplasmic chaperone compare
ABZR86_RS12200 -0.7 -3.4 ribulose-phosphate 3-epimerase compare
ABZR86_RS11735 -0.7 -0.9 large-conductance mechanosensitive channel protein MscL compare
ABZR86_RS03545 -0.7 -3.7 gephyrin-like molybdotransferase Glp compare
ABZR86_RS10365 -0.7 -1.6 response regulator compare
ABZR86_RS02135 -0.7 -2.0 pseudouridine synthase compare
ABZR86_RS16775 -0.7 -1.1 putative holin compare
ABZR86_RS13100 -0.7 -2.8 GspH/FimT family pseudopilin compare
ABZR86_RS09505 -0.7 -3.9 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS18770 -0.7 -2.8 SIS domain-containing protein compare
ABZR86_RS19795 -0.7 -3.1 PTS sugar transporter subunit IIA compare
ABZR86_RS21340 -0.7 -5.0 sensor histidine kinase compare
ABZR86_RS19355 -0.7 -3.0 DNA-binding transcriptional regulator OxyR compare
ABZR86_RS06295 -0.7 -2.1 biopolymer transporter ExbD compare
ABZR86_RS13920 -0.7 -4.8 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS08775 -0.7 -1.9 HAD-IA family hydrolase compare
ABZR86_RS09385 -0.7 -2.9 sensor histidine kinase compare
ABZR86_RS09145 -0.7 -2.5 hypothetical protein compare
ABZR86_RS08865 -0.7 -1.0 30S ribosomal protein S18 compare
ABZR86_RS21315 -0.7 -4.5 GldG family protein compare
ABZR86_RS05545 -0.7 -3.8 glycosyltransferase family 4 protein compare
ABZR86_RS12895 -0.7 -3.9 heme o synthase compare
ABZR86_RS18815 -0.6 -2.4 FAD-binding protein compare
ABZR86_RS19520 -0.6 -2.4 (2Fe-2S)-binding protein compare
ABZR86_RS07130 -0.6 -3.7 hypothetical protein compare
ABZR86_RS15665 -0.6 -3.9 anhydro-N-acetylmuramic acid kinase compare
ABZR86_RS10315 -0.6 -3.2 Imm42 family immunity protein compare
ABZR86_RS00580 -0.6 -2.9 protease HtpX compare
ABZR86_RS10190 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Dyella japonica UNC79MFTsu3.2 in stress experiments

For stress Sodium nitrate across organisms