Experiment set3IT053 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with D-Cycloserine 0.12 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.3 -5.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -5.3 -8.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_447 -3.9 -6.9 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) conserved
Pf6N2E2_3351 -3.6 -6.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4162 -3.3 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3461 -3.3 -2.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2274 -3.1 -7.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5594 -2.6 -8.6 Endonuclease III (EC 4.2.99.18) conserved
Pf6N2E2_2258 -2.6 -12.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4773 -2.5 -1.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1056 -2.4 -4.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_288 -2.4 -3.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5156 -2.3 -4.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2753 -2.2 -4.9 HtrA protease/chaperone protein compare
Pf6N2E2_4474 -2.2 -9.3 FIG006231: RNA-binding protein conserved
Pf6N2E2_5252 -2.2 -2.3 FIG00956396: hypothetical protein compare
Pf6N2E2_3460 -2.1 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5428 -2.1 -6.7 DNA recombination and repair protein RecO compare
Pf6N2E2_2325 -2.1 -7.5 Recombination protein RecR compare
Pf6N2E2_4797 -2.0 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5430 -2.0 -9.2 Transglycosylase, Slt family compare
Pf6N2E2_4273 -2.0 -8.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4187 -2.0 -4.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4803 -1.9 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4362 -1.9 -4.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4072 -1.9 -5.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5723 -1.9 -9.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4352 -1.9 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4918 -1.8 -4.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4197 -1.8 -9.7 DNA recombination and repair protein RecF compare
Pf6N2E2_309 -1.7 -2.4 FIG00957702: hypothetical protein compare
Pf6N2E2_4416 -1.7 -3.5 Tyrosine recombinase XerC compare
Pf6N2E2_3908 -1.6 -7.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2128 -1.6 -4.0 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2013 -1.6 -1.9 hypothetical protein compare
Pf6N2E2_3077 -1.5 -3.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_4074 -1.5 -10.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2285 -1.5 -1.3 FIG00954079: hypothetical protein compare
Pf6N2E2_5664 -1.5 -5.0 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_4987 -1.4 -1.4 MaoC-like domain protein compare
Pf6N2E2_2863 -1.4 -5.8 Gluconate permease compare
Pf6N2E2_2526 -1.3 -5.4 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_142 -1.3 -4.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3656 -1.3 -5.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_2992 -1.3 -4.7 Regulatory protein RecX compare
Pf6N2E2_5554 -1.3 -4.2 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_2218 -1.3 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3370 -1.3 -7.9 DNA repair protein RecN conserved
Pf6N2E2_2277 -1.2 -2.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2124 -1.2 -2.4 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2217 -1.2 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2693 -1.2 -1.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5633 -1.2 -9.0 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4204 -1.2 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5086 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_4206 -1.1 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4372 -1.1 -4.5 FIG00460773: hypothetical protein compare
Pf6N2E2_2152 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_4417 -1.1 -3.1 Protein of unknown function DUF484 compare
Pf6N2E2_4886 -1.1 -7.1 Catalase (EC 1.11.1.6) compare
Pf6N2E2_5660 -1.1 -5.1 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_1624 -1.1 -2.4 MbtH-like protein compare
Pf6N2E2_5861 -1.1 -5.9 FIG00953885: hypothetical protein compare
Pf6N2E2_302 -1.1 -4.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2534 -1.1 -2.1 Cell division protein BolA compare
Pf6N2E2_5181 -1.1 -7.8 Paraquat-inducible protein A compare
Pf6N2E2_4888 -1.1 -8.4 Excinuclease ABC subunit A compare
Pf6N2E2_2967 -1.1 -1.6 Cold shock protein CspA compare
Pf6N2E2_52 -1.1 -7.8 Excinuclease ABC subunit B compare
Pf6N2E2_2912 -1.0 -1.8 FIG00954094: hypothetical protein compare
Pf6N2E2_622 -1.0 -2.7 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5076 -1.0 -3.5 DNA repair protein RadA compare
Pf6N2E2_5183 -1.0 -7.6 Paraquat-inducible protein B compare
Pf6N2E2_620 -1.0 -5.6 BatD compare
Pf6N2E2_6140 -1.0 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5448 -1.0 -4.5 hypothetical protein compare
Pf6N2E2_5661 -1.0 -3.2 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_624 -1.0 -3.8 hypothetical protein PA3071 compare
Pf6N2E2_5508 -1.0 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5389 -1.0 -6.6 UPF0246 protein YaaA compare
Pf6N2E2_4993 -1.0 -2.3 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5662 -1.0 -5.8 L-Arginine ABC transporter, permease protein AotM (from data) compare
Pf6N2E2_902 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2527 -1.0 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5768 -0.9 -3.0 DNA recombination-dependent growth factor C compare
Pf6N2E2_895 -0.9 -3.2 Transcriptional regulator, HxlR family compare
Pf6N2E2_4454 -0.9 -2.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3569 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_3499 -0.9 -1.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_5728 -0.9 -2.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2309 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_2318 -0.9 -4.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3695 -0.9 -3.0 Helix-turn-helix motif compare
Pf6N2E2_5965 -0.9 -3.1 transcriptional regulator compare
Pf6N2E2_3641 -0.9 -2.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_3477 -0.9 -1.6 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3611 -0.9 -1.2 HflC protein compare
Pf6N2E2_2864 -0.9 -1.8 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1656 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_4159 -0.9 -2.6 Cytochrome c4 compare
Pf6N2E2_6058 -0.9 -4.0 FIG139976: hypothetical protein compare
Pf6N2E2_98 -0.9 -2.0 putative transmembrane protein compare
Pf6N2E2_1083 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_2552 -0.9 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4611 -0.9 -3.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_146 -0.9 -1.4 Transcriptional regulator, MarR family compare
Pf6N2E2_3655 -0.9 -5.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3168 -0.9 -3.2 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf6N2E2_1885 -0.8 -2.3 Transcriptional regulator, AraC family compare
Pf6N2E2_4658 -0.8 -3.1 FIG00955006: hypothetical protein compare
Pf6N2E2_5027 -0.8 -5.6 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_4165 -0.8 -4.5 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_156 -0.8 -1.6 Carbon storage regulator compare
Pf6N2E2_2288 -0.8 -3.1 FIG00953423: hypothetical protein compare
Pf6N2E2_3899 -0.8 -4.6 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_4392 -0.8 -1.7 Translation initiation inhibitor compare
Pf6N2E2_5667 -0.8 -4.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5468 -0.8 -2.4 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_5536 -0.8 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3498 -0.8 -2.2 FIG00953349: hypothetical protein compare
Pf6N2E2_5597 -0.8 -2.4 Electron transport complex protein RnfD compare
Pf6N2E2_1335 -0.8 -2.0 Phospholipid-binding protein compare
Pf6N2E2_1817 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_5499 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_768 -0.8 -2.6 Fap amyloid fibril minor component compare
Pf6N2E2_5182 -0.8 -4.0 Paraquat-inducible protein A compare
Pf6N2E2_5506 -0.8 -4.5 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_6085 -0.8 -1.8 Aha1 domain superfamily compare
Pf6N2E2_5571 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_3264 -0.8 -1.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_43 -0.8 -2.6 Histidine permease YuiF compare
Pf6N2E2_5677 -0.8 -1.0 Carbon storage regulator compare
Pf6N2E2_2088 -0.8 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5242 -0.8 -1.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2306 -0.8 -3.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2940 -0.8 -3.0 OmpA family protein compare
Pf6N2E2_81 -0.8 -2.7 hypothetical protein compare
Pf6N2E2_4075 -0.8 -3.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_1673 -0.7 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3588 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_5447 -0.7 -3.2 Transcriptional regulator, PadR family compare
Pf6N2E2_3870 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_74 -0.7 -1.5 DedD protein compare
Pf6N2E2_4394 -0.7 -4.5 Putrescine utilization regulator compare
Pf6N2E2_2010 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_4168 -0.7 -3.1 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_5663 -0.7 -1.9 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_1747 -0.7 -2.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3744 -0.7 -2.2 General secretion pathway protein F compare
Pf6N2E2_50 -0.7 -3.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2488 -0.7 -0.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_350 -0.7 -1.7 Gfa-like protein compare
Pf6N2E2_621 -0.7 -3.8 TPR domain protein in aerotolerance operon compare
Pf6N2E2_1103 -0.7 -2.5 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Pf6N2E2_2021 -0.7 -3.6 Excinuclease ABC subunit C compare
Pf6N2E2_2106 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_4369 -0.7 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_698 -0.7 -1.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_1153 -0.7 -2.0 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_3885 -0.7 -1.7 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_533 -0.7 -1.5 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_4459 -0.7 -1.0 Transcriptional regulator, GntR family compare
Pf6N2E2_2073 -0.7 -3.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4305 -0.7 -1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_614 -0.7 -4.0 3-carboxymuconate cyclase compare
Pf6N2E2_693 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_634 -0.7 -4.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_6057 -0.7 -2.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_1699 -0.7 -1.6 FIG00955832: hypothetical protein compare
Pf6N2E2_3782 -0.7 -1.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4624 -0.7 -0.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2706 -0.7 -1.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5338 -0.6 -4.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_640 -0.6 -1.9 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_5771 -0.6 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5704 -0.6 -2.5 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2518 -0.6 -1.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_424 -0.6 -2.8 Decarboxylase family protein compare
Pf6N2E2_2304 -0.6 -2.5 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf6N2E2_4414 -0.6 -1.7 FIG00953808: hypothetical protein compare
Pf6N2E2_3033 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_3299 -0.6 -3.8 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) compare
Pf6N2E2_5236 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_4659 -0.6 -3.0 Lipoprotein, putative compare
Pf6N2E2_1563 -0.6 -2.5 Transcriptional regulator, AraC family compare
Pf6N2E2_3516 -0.6 -1.6 Probable transmembrane protein compare
Pf6N2E2_3505 -0.6 -1.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1606 -0.6 -2.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_1441 -0.6 -1.0 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5153 -0.6 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_5713 -0.6 -4.0 FIG00956341: hypothetical protein compare
Pf6N2E2_5414 -0.6 -3.7 Nucleoid-associated protein compare
Pf6N2E2_724 -0.6 -0.5 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_2592 -0.6 -3.0 Flagellar motor switch protein FliG compare
Pf6N2E2_1958 -0.6 -1.8 Predicted dinucleotide-binding enzymes compare
Pf6N2E2_5527 -0.6 -1.4 Cold shock protein CspC compare
Pf6N2E2_955 -0.6 -2.0 FIG00953508: hypothetical protein compare
Pf6N2E2_341 -0.6 -1.8 sensor histidine kinase compare
Pf6N2E2_5596 -0.6 -2.7 Electron transport complex protein RnfG compare
Pf6N2E2_241 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress D-Cycloserine in Pseudomonas fluorescens FW300-N2E2

For stress D-Cycloserine across organisms