Experiment set3IT053 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Sodium nitrite 6 mM

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09075 -5.2 -2.4 NrsF family protein compare
ABZR86_RS12005 -4.8 -3.3 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS12885 -4.6 -3.2 magnesium-translocating P-type ATPase compare
ABZR86_RS09885 -4.3 -3.0 trypsin-like peptidase domain-containing protein compare
ABZR86_RS15460 -3.3 -3.9 type I glutamate--ammonia ligase compare
ABZR86_RS09935 -2.7 -2.7 DUF4105 domain-containing protein compare
ABZR86_RS19235 -2.7 -4.8 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS12410 -2.6 -4.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS05550 -2.6 -4.5 lipopolysaccharide assembly protein LapB compare
ABZR86_RS18450 -2.6 -4.3 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS12280 -2.5 -3.0 dihydrolipoyl dehydrogenase compare
ABZR86_RS02255 -2.4 -3.6 tRNA-Gly compare
ABZR86_RS06275 -2.3 -5.6 DUF6165 family protein compare
ABZR86_RS20775 -2.2 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR86_RS05700 -2.2 -3.8 SsrA-binding protein SmpB compare
ABZR86_RS06590 -2.1 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS07180 -2.1 -4.0 RNA polymerase sigma factor RpoE compare
ABZR86_RS13880 -1.9 -2.8 peptide deformylase compare
ABZR86_RS06265 -1.9 -5.9 3-deoxy-D-manno-octulosonic acid kinase compare
ABZR86_RS07560 -1.9 -8.8 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS09535 -1.9 -1.9 preprotein translocase subunit YajC compare
ABZR86_RS18780 -1.7 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS07660 -1.7 -3.9 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS17425 -1.7 -2.7 16S ribosomal RNA compare
ABZR86_RS11485 -1.7 -5.9 hypothetical protein compare
ABZR86_RS04495 -1.7 -1.5 hypothetical protein compare
ABZR86_RS11825 -1.7 -1.9 citrate synthase compare
ABZR86_RS06580 -1.6 -2.8 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS12415 -1.6 -3.6 NADP-dependent malic enzyme compare
ABZR86_RS05335 -1.6 -2.4 hemerythrin domain-containing protein compare
ABZR86_RS08015 -1.5 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS00660 -1.5 -3.9 recombinase RecA compare
ABZR86_RS07665 -1.5 -3.8 exodeoxyribonuclease V subunit beta compare
ABZR86_RS07310 -1.4 -6.1 tRNA-Val compare
ABZR86_RS19225 -1.4 -3.6 site-specific tyrosine recombinase XerD compare
ABZR86_RS15695 -1.4 -1.2 23S ribosomal RNA compare
ABZR86_RS08435 -1.4 -5.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS02185 -1.4 -7.0 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS08250 -1.3 -2.4 phosphate signaling complex protein PhoU compare
ABZR86_RS17880 -1.3 -1.5 hypothetical protein compare
ABZR86_RS07215 -1.3 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS14100 -1.3 -5.6 DNA adenine methylase compare
ABZR86_RS00685 -1.3 -2.0 carbon storage regulator CsrA compare
ABZR86_RS05820 -1.3 -3.2 GntR family transcriptional regulator compare
ABZR86_RS14700 -1.3 -3.7 glucose-6-phosphate dehydrogenase compare
ABZR86_RS06690 -1.3 -4.1 acireductone synthase compare
ABZR86_RS20820 -1.2 -1.4 CsbD family protein compare
ABZR86_RS09660 -1.2 -3.5 MerR family transcriptional regulator compare
ABZR86_RS18815 -1.2 -3.7 FAD-binding protein compare
ABZR86_RS06270 -1.2 -5.1 glycosyltransferase family 9 protein compare
ABZR86_RS04420 -1.2 -3.7 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR86_RS20600 -1.2 -6.6 ferrous iron transporter B compare
ABZR86_RS16045 -1.2 -6.4 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS07175 -1.1 -3.8 sigma-E factor negative regulatory protein compare
ABZR86_RS20595 -1.1 -1.8 DUF6587 family protein compare
ABZR86_RS18775 -1.1 -1.3 nucleotidyltransferase family protein compare
ABZR86_RS14690 -1.1 -5.4 phosphogluconate dehydratase compare
ABZR86_RS18720 -1.1 -3.4 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS19865 -1.1 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS20605 -1.1 -1.9 FeoA family protein compare
ABZR86_RS12215 -1.1 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS06355 -1.1 -4.3 folate-binding protein YgfZ compare
ABZR86_RS19805 -1.1 -4.0 HPr(Ser) kinase/phosphatase compare
ABZR86_RS01755 -1.1 -4.2 helix-turn-helix domain-containing protein compare
ABZR86_RS15640 -1.1 -1.6 orotate phosphoribosyltransferase compare
ABZR86_RS05545 -1.0 -6.0 glycosyltransferase family 4 protein compare
ABZR86_RS05690 -1.0 -1.0 RnfH family protein compare
ABZR86_RS18705 -1.0 -1.2 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS13380 -1.0 -1.6 Sec-independent protein translocase subunit TatA compare
ABZR86_RS13370 -1.0 -6.0 twin-arginine translocase subunit TatC compare
ABZR86_RS12450 -1.0 -6.5 Grx4 family monothiol glutaredoxin compare
ABZR86_RS18830 -1.0 -4.3 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS17075 -1.0 -3.1 four helix bundle protein compare
ABZR86_RS19710 -1.0 -8.0 glycosyltransferase family 2 protein compare
ABZR86_RS07820 -1.0 -1.3 Spy/CpxP family protein refolding chaperone compare
ABZR86_RS18655 -1.0 -4.3 transketolase compare
ABZR86_RS05910 -0.9 -3.2 cupin domain-containing protein compare
ABZR86_RS07265 -0.9 -3.1 protein phosphatase 2C domain-containing protein compare
ABZR86_RS21480 -0.9 -5.0 arginase family protein compare
ABZR86_RS05860 -0.9 -2.0 adenylosuccinate lyase compare
ABZR86_RS18715 -0.9 -6.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS15025 -0.9 -2.6 tyrosine recombinase XerC compare
ABZR86_RS13935 -0.9 -2.7 lipid A biosynthesis acyltransferase compare
ABZR86_RS20700 -0.9 -1.1 transcriptional repressor AgaR compare
ABZR86_RS03760 -0.9 -1.4 hypothetical protein compare
ABZR86_RS11655 -0.9 -4.4 SLC13 family permease compare
ABZR86_RS17990 -0.9 -1.6 glutathione S-transferase family protein compare
ABZR86_RS09960 -0.9 -3.2 pilin compare
ABZR86_RS08130 -0.9 -5.3 dCTP deaminase compare
ABZR86_RS18765 -0.9 -2.1 dehydrogenase compare
ABZR86_RS10530 -0.8 -1.1 H-NS histone family protein compare
ABZR86_RS05570 -0.8 -3.4 (d)CMP kinase compare
ABZR86_RS21355 -0.8 -2.8 septum site-determining protein MinD compare
ABZR86_RS18460 -0.8 -6.5 oligopeptide:H+ symporter compare
ABZR86_RS15020 -0.8 -1.5 DUF484 family protein compare
ABZR86_RS04415 -0.8 -3.7 sulfite exporter TauE/SafE family protein compare
ABZR86_RS10355 -0.8 -0.9 chemotaxis protein CheW compare
ABZR86_RS08865 -0.8 -1.2 30S ribosomal protein S18 compare
ABZR86_RS10315 -0.8 -3.3 Imm42 family immunity protein compare
ABZR86_RS09815 -0.8 -4.4 SDR family NAD(P)-dependent oxidoreductase compare
ABZR86_RS11240 -0.8 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABZR86_RS13915 -0.8 -5.8 glycosyltransferase family 2 protein compare
ABZR86_RS10840 -0.8 -1.8 Holliday junction branch migration protein RuvA compare
ABZR86_RS11870 -0.8 -5.4 phospholipid-binding protein MlaC compare
ABZR86_RS11875 -0.7 -4.5 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS18725 -0.7 -3.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR86_RS09265 -0.7 -5.4 hypothetical protein compare
ABZR86_RS06030 -0.7 -1.0 transcription termination factor NusA compare
ABZR86_RS12200 -0.7 -3.7 ribulose-phosphate 3-epimerase compare
ABZR86_RS02165 -0.7 -6.7 aconitate hydratase AcnA compare
ABZR86_RS04640 -0.7 -2.8 FecR domain-containing protein compare
ABZR86_RS11900 -0.7 -2.1 ribonuclease PH compare
ABZR86_RS18735 -0.7 -4.3 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS10965 -0.7 -3.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ABZR86_RS08480 -0.7 -3.0 methylisocitrate lyase compare
ABZR86_RS09015 -0.7 -3.3 anti-sigma factor compare
ABZR86_RS22010 -0.7 -3.9 redox-regulated ATPase YchF compare
ABZR86_RS18585 -0.7 -3.9 polysaccharide biosynthesis/export family protein compare
ABZR86_RS18355 -0.7 -1.1 PepSY domain-containing protein compare
ABZR86_RS18770 -0.7 -3.0 SIS domain-containing protein compare
ABZR86_RS18545 -0.7 -4.3 hypothetical protein compare
ABZR86_RS13920 -0.7 -5.4 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS08355 -0.7 -3.0 FtsH protease activity modulator HflK compare
ABZR86_RS06260 -0.7 -2.8 MBL fold metallo-hydrolase compare
ABZR86_RS20190 -0.7 -1.0 flagellar export protein FliJ compare
ABZR86_RS06630 -0.7 -2.5 phosphopyruvate hydratase compare
ABZR86_RS22135 -0.7 -2.8 hypothetical protein compare
ABZR86_RS02795 -0.7 -1.2 phosphoglycerate mutase compare
ABZR86_RS18730 -0.7 -3.0 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS08350 -0.7 -3.0 protease modulator HflC compare
ABZR86_RS10830 -0.7 -1.3 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS03435 -0.7 -4.0 GTP cyclohydrolase II compare
ABZR86_RS09720 -0.6 -1.9 flagellar basal body rod protein FlgC compare
ABZR86_RS11895 -0.6 -1.2 YicC/YloC family endoribonuclease compare
ABZR86_RS12505 -0.6 -3.8 SDR family oxidoreductase compare
ABZR86_RS00150 -0.6 -1.1 isochorismatase family protein compare
ABZR86_RS12935 -0.6 -1.8 DUF2244 domain-containing protein compare
ABZR86_RS12940 -0.6 -5.2 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABZR86_RS18140 -0.6 -1.2 hypothetical protein compare
ABZR86_RS07165 -0.6 -4.5 translation elongation factor 4 compare
ABZR86_RS21325 -0.6 -1.4 ABC transporter ATP-binding protein compare
ABZR86_RS18760 -0.6 -4.6 glycosyltransferase compare
ABZR86_RS08180 -0.6 -1.5 RnfABCDGE type electron transport complex subunit B compare
ABZR86_RS04435 -0.6 -4.3 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR86_RS06190 -0.6 -1.7 YceD family protein compare
ABZR86_RS04430 -0.6 -3.1 FixH family protein compare
ABZR86_RS19800 -0.6 -4.3 RNase adapter RapZ compare
ABZR86_RS10035 -0.6 -3.7 glycosyltransferase family 2 protein compare
ABZR86_RS09880 -0.6 -3.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR86_RS03360 -0.6 -2.2 contractile injection system tape measure protein compare
ABZR86_RS00730 -0.6 -1.7 glutaredoxin 3 compare
ABZR86_RS03105 -0.6 -1.0 response regulator transcription factor compare
ABZR86_RS00645 -0.6 -3.7 FecR domain-containing protein compare
ABZR86_RS10425 -0.6 -2.4 pyrroline-5-carboxylate reductase compare
ABZR86_RS00675 -0.6 -1.7 regulatory protein RecX compare
ABZR86_RS19515 -0.6 -3.8 molybdopterin cofactor-binding domain-containing protein compare
ABZR86_RS04450 -0.6 -5.7 cytochrome-c oxidase, cbb3-type subunit I compare
ABZR86_RS20570 -0.6 -2.5 acetyl-CoA C-acyltransferase compare
ABZR86_RS03500 -0.6 -4.8 TonB-dependent siderophore receptor compare
ABZR86_RS02305 -0.6 -1.2 hypothetical protein compare
ABZR86_RS04445 -0.6 -4.7 cytochrome-c oxidase, cbb3-type subunit II compare
ABZR86_RS01440 -0.6 -1.9 hypothetical protein compare
ABZR86_RS16290 -0.6 -4.0 alpha/beta family hydrolase compare
ABZR86_RS12605 -0.6 -1.8 thioredoxin TrxA compare
ABZR86_RS01480 -0.6 -2.1 hypothetical protein compare
ABZR86_RS16040 -0.6 -0.6 molybdopterin-dependent oxidoreductase compare
ABZR86_RS19795 -0.6 -3.3 PTS sugar transporter subunit IIA compare
ABZR86_RS20640 -0.6 -3.5 translational GTPase TypA compare
ABZR86_RS19245 -0.6 -2.1 glycosyltransferase family 2 protein compare
ABZR86_RS15330 -0.6 -3.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS08415 -0.5 -0.7 OmpA family protein compare
ABZR86_RS21575 -0.5 -2.9 [protein-PII] uridylyltransferase compare
ABZR86_RS12595 -0.5 -0.9 cell division ATP-binding protein FtsE compare
ABZR86_RS16680 -0.5 -1.8 AI-2E family transporter compare
ABZR86_RS20980 -0.5 -1.9 hypothetical protein compare
ABZR86_RS17095 -0.5 -3.1 protein-disulfide reductase DsbD compare
ABZR86_RS21160 -0.5 -2.0 cytochrome c compare
ABZR86_RS18490 -0.5 -1.5 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS11815 -0.5 -2.6 penicillin-binding protein 1A compare
ABZR86_RS04425 -0.5 -4.3 heavy metal translocating P-type ATPase compare
ABZR86_RS02200 -0.5 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS10710 -0.5 -1.0 transcriptional regulator NrdR compare
ABZR86_RS05240 -0.5 -1.9 hypothetical protein compare
ABZR86_RS07495 -0.5 -1.1 hypothetical protein compare
ABZR86_RS21280 -0.5 -1.6 hypothetical protein compare
ABZR86_RS06400 -0.5 -2.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR86_RS21320 -0.5 -3.6 ABC transporter permease subunit compare
ABZR86_RS16285 -0.5 -4.0 cell division protein ZapE compare
ABZR86_RS19555 -0.5 -2.8 fumarate hydratase compare
ABZR86_RS11280 -0.5 -3.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR86_RS11880 -0.5 -2.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS21725 -0.5 -3.7 YhdP family protein compare
ABZR86_RS13710 -0.5 -0.8 hypothetical protein compare
ABZR86_RS11820 -0.5 -1.6 hypothetical protein compare
ABZR86_RS22185 -0.5 -1.2 NUDIX hydrolase compare
ABZR86_RS11860 -0.5 -3.8 VacJ family lipoprotein compare
ABZR86_RS04440 -0.5 -1.9 cbb3-type cytochrome c oxidase subunit 3 compare
ABZR86_RS05540 -0.5 -3.2 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR86_RS16195 -0.5 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR86_RS16550 -0.5 -1.5 Lrp/AsnC family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Dyella japonica UNC79MFTsu3.2 in stress experiments

For stress Sodium nitrite across organisms