Experiment set3IT053 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

200 most important genes:

  gene name fitness t score description  
H281DRAFT_04710 -5.0 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_06060 -4.7 -8.5 amidophosphoribosyltransferase compare
H281DRAFT_00909 -4.0 -5.4 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_04278 -4.0 -10.7 6-phosphogluconate dehydratase compare
H281DRAFT_02004 -4.0 -6.0 phosphoglycerate mutase compare
H281DRAFT_00860 -3.8 -2.7 phosphoserine phosphatase compare
H281DRAFT_02297 -3.8 -8.6 Cd2+/Zn2+-exporting ATPase compare
H281DRAFT_04974 -3.5 -7.0 aromatic-amino-acid transaminase compare
H281DRAFT_04553 -3.4 -6.1 ketol-acid reductoisomerase compare
H281DRAFT_03926 -3.4 -9.1 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_04610 -3.3 -16.6 Fe-S oxidoreductase compare
H281DRAFT_00197 -3.1 -12.2 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_00115 -3.0 -3.3 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_00286 -2.7 -3.7 transaldolase compare
H281DRAFT_04679 -2.7 -4.4 pyrroline-5-carboxylate reductase compare
H281DRAFT_04635 -2.6 -3.0 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_00117 -2.5 -11.3 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_00291 -2.4 -3.6 Cytochrome c553 compare
H281DRAFT_06264 -2.4 -5.5 glutamate 5-kinase compare
H281DRAFT_00194 -2.3 -3.2 argininosuccinate lyase compare
H281DRAFT_00395 -2.3 -9.2 hydroxymethylpyrimidine synthase compare
H281DRAFT_04388 -2.2 -1.8 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_04515 -2.2 -3.7 RNAse G compare
H281DRAFT_00116 -2.2 -1.5 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_04120 -2.2 -7.2 argininosuccinate synthase compare
H281DRAFT_00114 -2.2 -6.0 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_06067 -2.2 -9.5 tryptophan synthase, beta chain compare
H281DRAFT_06065 -2.0 -7.7 tryptophan synthase, alpha chain compare
H281DRAFT_00919 -1.8 -2.6 hypothetical protein compare
H281DRAFT_02670 -1.8 -2.3 transcriptional regulator, GntR family compare
H281DRAFT_00757 -1.8 -1.9 hypothetical protein compare
H281DRAFT_00118 -1.8 -5.4 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_05712 -1.7 -6.7 indole-3-glycerol phosphate synthase compare
H281DRAFT_06315 -1.7 -2.4 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_05281 -1.6 -1.9 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_03863 -1.6 -1.6 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_00848 -1.6 -2.3 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_01894 -1.6 -1.9 transcriptional regulator, MarR family compare
H281DRAFT_03925 -1.5 -7.1 chorismate mutase compare
H281DRAFT_06068 -1.5 -2.5 phosphoribosylanthranilate isomerase compare
H281DRAFT_05621 -1.5 -3.1 glutamate synthase (NADH) small subunit compare
H281DRAFT_03147 -1.5 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_05620 -1.5 -10.7 glutamate synthase (NADH) large subunit compare
H281DRAFT_04677 -1.4 -7.7 starvation-inducible DNA-binding protein compare
H281DRAFT_04835 -1.4 -2.4 hypothetical protein compare
H281DRAFT_03153 -1.4 -2.7 two component transcriptional regulator, LuxR family compare
H281DRAFT_03274 -1.4 -1.9 hypothetical protein compare
H281DRAFT_06529 -1.4 -5.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_00120 -1.3 -2.6 sirohydrochlorin cobaltochelatase compare
H281DRAFT_06474 -1.3 -2.3 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_03010 -1.3 -2.6 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_04119 -1.3 -3.5 ornithine carbamoyltransferase compare
H281DRAFT_00468 -1.3 -4.6 dihydrolipoamide dehydrogenase compare
H281DRAFT_02859 -1.2 -2.6 precorrin-6A reductase (EC 1.3.1.54) compare
H281DRAFT_01883 -1.2 -1.2 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_05705 -1.2 -2.5 hypothetical protein compare
H281DRAFT_03118 -1.2 -1.1 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_05086 -1.2 -2.4 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_00141 -1.2 -3.1 alpha-ribazole phosphatase compare
H281DRAFT_05609 -1.2 -1.8 penicillin-binding protein 1A compare
H281DRAFT_01684 -1.2 -3.8 transcriptional regulator, TetR family compare
H281DRAFT_04008 -1.2 -2.9 RNAse PH compare
H281DRAFT_02865 -1.2 -6.0 precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase compare
H281DRAFT_00146 -1.2 -5.4 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
H281DRAFT_02866 -1.1 -4.5 precorrin-3 methyltransferase (EC 2.1.1.131) compare
H281DRAFT_02860 -1.1 -4.3 cobalt-precorrin-5B (C1)-methyltransferase compare
H281DRAFT_02116 -1.1 -2.6 transcriptional regulator, LacI family compare
H281DRAFT_01841 -1.1 -3.4 Asp/Glu/hydantoin racemase compare
H281DRAFT_01025 -1.1 -1.4 transcriptional regulator, MarR family compare
H281DRAFT_00896 -1.1 -2.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_04773 -1.1 -2.1 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_04606 -1.1 -1.0 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_05323 -1.0 -1.8 hypothetical protein compare
H281DRAFT_00940 -1.0 -2.4 psiF repeat-containing protein compare
H281DRAFT_01028 -1.0 -1.2 peptide/nickel transport system permease protein compare
H281DRAFT_02864 -1.0 -2.5 precorrin-8X methylmutase compare
H281DRAFT_05302 -1.0 -1.2 FAD/FMN-containing dehydrogenase compare
H281DRAFT_00933 -1.0 -4.4 hypothetical protein compare
H281DRAFT_05213 -1.0 -2.1 gluconate 2-dehydrogenase compare
H281DRAFT_03723 -1.0 -2.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_02296 -1.0 -2.1 transcriptional regulator, MerR family compare
H281DRAFT_06046 -1.0 -1.1 serine/threonine protein phosphatase 1 compare
H281DRAFT_00506 -0.9 -0.9 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_04922 -0.9 -2.4 iron complex transport system permease protein compare
H281DRAFT_02922 -0.9 -2.6 transcriptional regulator, AraC family compare
H281DRAFT_00298 -0.9 -2.5 hypothetical protein compare
H281DRAFT_06438 -0.9 -1.2 hypothetical protein compare
H281DRAFT_00143 -0.9 -2.3 L-threonine O-3-phosphate decarboxylase compare
H281DRAFT_00504 -0.9 -3.5 hypothetical protein compare
H281DRAFT_06530 -0.9 -2.1 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11) compare
H281DRAFT_02856 -0.9 -1.5 Protein of unknown function (DUF1488) compare
H281DRAFT_03157 -0.9 -2.5 transcriptional regulator, LysR family compare
H281DRAFT_05085 -0.9 -2.5 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_05298 -0.9 -1.2 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_04707 -0.9 -3.2 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_06180 -0.9 -1.2 hypothetical protein compare
H281DRAFT_02863 -0.9 -3.1 precorrin-3B synthase compare
H281DRAFT_03367 -0.9 -1.4 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_01549 -0.9 -2.4 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_01599 -0.9 -1.3 GTP cyclohydrolase I compare
H281DRAFT_06523 -0.9 -3.9 protoporphyrin IX magnesium-chelatase (EC 6.6.1.1) compare
H281DRAFT_06286 -0.8 -1.2 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_04231 -0.8 -2.5 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
H281DRAFT_05494 -0.8 -1.0 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_02612 -0.8 -3.0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase compare
H281DRAFT_06295 -0.8 -1.4 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_04639 -0.8 -3.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
H281DRAFT_03640 -0.8 -2.3 transcriptional regulator, IclR family compare
H281DRAFT_06190 -0.8 -1.0 DNA-binding protein H-NS compare
H281DRAFT_05881 -0.8 -1.3 D-amino-acid dehydrogenase compare
H281DRAFT_02080 -0.8 -5.1 cell division protein FtsN compare
H281DRAFT_05332 -0.8 -1.7 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04673 -0.8 -3.3 transcriptional regulator, LysR family compare
H281DRAFT_00969 -0.8 -1.9 Type IV pili methyl-accepting chemotaxis transducer N-term compare
H281DRAFT_01799 -0.8 -1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00834 -0.8 -2.3 DNA replication and repair protein RecR compare
H281DRAFT_04552 -0.8 -2.0 acetolactate synthase, small subunit compare
H281DRAFT_00608 -0.8 -3.2 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_00368 -0.8 -2.2 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_01338 -0.8 -1.7 outer membrane transport energization protein ExbB compare
H281DRAFT_00119 -0.8 -2.1 uroporphyrinogen-III C-methyltransferase compare
H281DRAFT_03228 -0.8 -2.6 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05815 -0.8 -2.6 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_06375 -0.8 -1.1 hypothetical protein compare
H281DRAFT_03802 -0.8 -2.3 two-component system, OmpR family, sensor histidine kinase TctE compare
H281DRAFT_05944 -0.8 -1.9 DNA-binding transcriptional regulator, FadR family compare
H281DRAFT_05397 -0.7 -3.4 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04425 -0.7 -1.1 hypothetical protein compare
H281DRAFT_06127 -0.7 -2.7 hypothetical protein compare
H281DRAFT_01899 -0.7 -2.3 hypothetical protein compare
H281DRAFT_06238 -0.7 -1.1 hypothetical protein compare
H281DRAFT_06490 -0.7 -1.2 hypothetical protein compare
H281DRAFT_03946 -0.7 -2.0 transcriptional regulator, ArsR family compare
H281DRAFT_06469 -0.7 -2.7 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily compare
H281DRAFT_05977 -0.7 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_02890 -0.7 -1.6 peroxiredoxin (alkyl hydroperoxide reductase subunit C) compare
H281DRAFT_05092 -0.7 -1.8 hypothetical protein compare
H281DRAFT_04457 -0.7 -2.5 2-keto-myo-inositol dehydratase compare
H281DRAFT_00853 -0.7 -1.1 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_00970 -0.7 -2.4 putative Mg2+ transporter-C (MgtC) family protein compare
H281DRAFT_02459 -0.7 -1.8 sarcosine oxidase subunit gamma compare
H281DRAFT_01756 -0.7 -1.9 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_00819 -0.7 -0.9 competence protein ComEA compare
H281DRAFT_00717 -0.7 -1.3 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_06354 -0.7 -1.4 Sugar phosphate permease compare
H281DRAFT_04694 -0.7 -3.1 heat-inducible transcription repressor HrcA compare
H281DRAFT_04934 -0.7 -1.0 Sensors of blue-light using FAD compare
H281DRAFT_01814 -0.7 -1.8 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_03117 -0.7 -2.5 sarcosine oxidase subunit beta compare
H281DRAFT_04873 -0.7 -3.1 histidine ammonia-lyase compare
H281DRAFT_03981 -0.7 -1.7 Uncharacterized membrane protein compare
H281DRAFT_00379 -0.7 -1.0 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_01413 -0.7 -1.0 hypothetical protein compare
H281DRAFT_02830 -0.7 -1.1 hypothetical protein compare
H281DRAFT_02436 -0.7 -2.4 flagellar hook-associated protein 2 compare
H281DRAFT_01865 -0.7 -1.4 hypothetical protein compare
H281DRAFT_05803 -0.7 -2.9 dipeptide transport system permease protein compare
H281DRAFT_01985 -0.7 -3.5 protoheme IX farnesyltransferase compare
H281DRAFT_01138 -0.7 -1.5 2-furoate---CoA ligase compare
H281DRAFT_00992 -0.7 -1.8 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03352 -0.7 -1.4 Polyketide cyclase / dehydrase and lipid transport compare
H281DRAFT_02573 -0.7 -1.5 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_01382 -0.7 -0.7 Cellulose biosynthesis protein BcsR compare
H281DRAFT_00736 -0.7 -2.1 Lysophospholipase compare
H281DRAFT_01989 -0.7 -1.3 Protein of unknown function (DUF2909) compare
H281DRAFT_01136 -0.7 -2.2 5-(hydroxymethyl)furfural/furfural oxidase compare
H281DRAFT_04623 -0.7 -2.8 transcriptional regulator, TetR family compare
H281DRAFT_03775 -0.7 -1.0 protein of unknown function (DUF4399) compare
H281DRAFT_00290 -0.7 -0.6 Cytochrome c553 compare
H281DRAFT_03545 -0.7 -2.0 hypothetical protein compare
H281DRAFT_05090 -0.7 -1.3 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_05134 -0.7 -1.6 transcriptional regulator, TetR family compare
H281DRAFT_00515 -0.7 -2.2 transcriptional regulator, XRE family compare
H281DRAFT_00627 -0.7 -2.6 phosphoenolpyruvate synthase compare
H281DRAFT_03576 -0.7 -1.1 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_04875 -0.7 -1.4 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_06524 -0.7 -3.9 cobaltochelatase CobN subunit compare
H281DRAFT_00444 -0.6 -2.0 N-acetylglutamate synthase compare
H281DRAFT_02183 -0.6 -1.2 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_05950 -0.6 -2.5 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01184 -0.6 -1.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00559 -0.6 -1.1 hypothetical protein compare
H281DRAFT_03454 -0.6 -1.3 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_01980 -0.6 -1.7 transcriptional regulator, GntR family compare
H281DRAFT_00090 -0.6 -1.9 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_03101 -0.6 -2.7 CBS domain-containing membrane protein compare
H281DRAFT_05536 -0.6 -2.1 hypothetical protein compare
H281DRAFT_05601 -0.6 -0.7 hypothetical protein compare
H281DRAFT_05678 -0.6 -1.1 hypothetical protein compare
H281DRAFT_05293 -0.6 -1.0 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_01262 -0.6 -0.9 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01518 -0.6 -1.3 D-mannonate dehydratase (EC 4.2.1.8) compare
H281DRAFT_01519 -0.6 -1.5 fructuronate reductase compare
H281DRAFT_04628 -0.6 -1.5 FdhD protein compare
H281DRAFT_01111 -0.6 -1.3 transcriptional regulator, DeoR family compare
H281DRAFT_04687 -0.6 -3.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_05540 -0.6 -1.6 transcriptional regulator, LacI family compare
H281DRAFT_06500 -0.6 -1.4 Lactate dehydrogenase compare
H281DRAFT_02371 -0.6 -2.4 adenylate cyclase compare
H281DRAFT_01811 -0.6 -1.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms