Experiment set3IT052 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -6.0 -4.2 S41 family peptidase compare
PFLU_RS03645 -6.0 -8.3 tetratricopeptide repeat protein compare
PFLU_RS14550 -5.4 -3.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28695 -5.2 -3.6 phosphoglycerate dehydrogenase compare
PFLU_RS28645 -5.0 -19.5 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22095 -4.8 -12.3 GTP diphosphokinase compare
PFLU_RS06320 -4.5 -4.3 OmpH family outer membrane protein compare
PFLU_RS24485 -4.3 -14.2 hypothetical protein compare
PFLU_RS26545 -4.1 -12.3 sel1 repeat family protein compare
PFLU_RS02490 -4.1 -13.2 phosphoserine phosphatase SerB compare
PFLU_RS27440 -4.0 -7.6 nucleotidyltransferase family protein compare
PFLU_RS27620 -4.0 -22.4 acyl-CoA dehydrogenase compare
PFLU_RS24125 -4.0 -4.7 cold-shock protein compare
PFLU_RS25715 -4.0 -4.7 RNA polymerase-binding protein DksA compare
PFLU_RS12975 -3.9 -5.9 DUF934 domain-containing protein compare
PFLU_RS02365 -3.9 -15.8 glycosyltransferase compare
PFLU_RS04070 -3.9 -2.7 peptide chain release factor 3 compare
PFLU_RS20540 -3.8 -12.6 phosphoribosylanthranilate isomerase compare
PFLU_RS25640 -3.8 -12.6 ketol-acid reductoisomerase compare
PFLU_RS04715 -3.8 -8.7 D-alanine--D-alanine ligase compare
PFLU_RS27365 -3.8 -11.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS09980 -3.8 -21.3 peptidase S41 compare
PFLU_RS22105 -3.8 -4.5 cysteine synthase CysM compare
PFLU_RS18505 -3.8 -10.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS00180 -3.8 -8.0 tryptophan synthase subunit beta compare
PFLU_RS07695 -3.7 -5.1 beta-N-acetylhexosaminidase compare
PFLU_RS11635 -3.7 -15.4 hypothetical protein conserved
PFLU_RS28650 -3.7 -9.2 RNA pyrophosphohydrolase compare
PFLU_RS29885 -3.7 -12.5 LysR family transcriptional regulator compare
PFLU_RS28535 -3.7 -17.9 dihydroxy-acid dehydratase compare
PFLU_RS24825 -3.6 -4.4 Fe-S cluster assembly protein IscX compare
PFLU_RS01620 -3.6 -10.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25755 -3.6 -2.5 pantoate--beta-alanine ligase compare
PFLU_RS22740 -3.6 -5.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS29875 -3.6 -17.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS04470 -3.6 -12.8 histidinol dehydrogenase compare
PFLU_RS27370 -3.5 -13.7 anthranilate phosphoribosyltransferase compare
PFLU_RS07650 -3.5 -16.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04465 -3.5 -11.0 ATP phosphoribosyltransferase compare
PFLU_RS01605 -3.5 -10.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS31290 -3.5 -2.9 EamA family transporter compare
PFLU_RS04435 -3.5 -4.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS26770 -3.4 -13.5 DedA family protein compare
PFLU_RS03770 -3.4 -15.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS02370 -3.3 -11.8 glycosyltransferase compare
PFLU_RS22595 -3.3 -3.9 OmpA family protein compare
PFLU_RS23920 -3.3 -3.7 septation protein A compare
PFLU_RS04445 -3.3 -7.0 ABC transporter substrate-binding protein compare
PFLU_RS04430 -3.3 -6.9 ATP-binding cassette domain-containing protein compare
PFLU_RS04440 -3.3 -7.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS12980 -3.3 -11.4 nitrite/sulfite reductase compare
PFLU_RS00175 -3.3 -9.1 tryptophan synthase subunit alpha compare
PFLU_RS04385 -3.3 -12.7 RNase adapter RapZ compare
PFLU_RS01610 -3.2 -13.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS11625 -3.2 -12.7 dihydroxy-acid dehydratase conserved
PFLU_RS28655 -3.2 -15.2 HAD family hydrolase compare
PFLU_RS11630 -3.2 -14.4 MFS transporter conserved
PFLU_RS30160 -3.1 -3.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS29490 -3.1 -11.2 ribonuclease PH compare
PFLU_RS07785 -3.1 -10.5 VacJ family lipoprotein compare
PFLU_RS04650 -3.1 -18.2 ABC transporter substrate-binding protein compare
PFLU_RS29880 -3.1 -13.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS27445 -3.1 -15.4 phosphotransferase compare
PFLU_RS25750 -3.0 -7.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS09055 -3.0 -4.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01900 -3.0 -9.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS11640 -3.0 -5.7 aldehyde dehydrogenase (NADP(+)) conserved
PFLU_RS29515 -3.0 -13.8 RidA family protein compare
PFLU_RS20575 -3.0 -7.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS26640 -3.0 -11.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS26735 -2.9 -9.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04930 -2.9 -13.6 PhoH family protein compare
PFLU_RS25735 -2.9 -8.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04315 -2.9 -4.0 rod shape-determining protein MreD compare
PFLU_RS20580 -2.8 -13.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -2.8 -15.5 3-isopropylmalate dehydrogenase compare
PFLU_RS28315 -2.8 -1.3 response regulator compare
PFLU_RS28725 -2.8 -12.2 DUF2059 domain-containing protein compare
PFLU_RS02590 -2.8 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28755 -2.8 -11.5 ABC transporter permease subunit compare
PFLU_RS24785 -2.8 -12.1 outer membrane protein assembly factor BamB compare
PFLU_RS26570 -2.8 -7.4 HlyC/CorC family transporter compare
PFLU_RS03765 -2.8 -12.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24095 -2.7 -1.9 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS29735 -2.7 -11.5 HlyC/CorC family transporter compare
PFLU_RS08065 -2.7 -10.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS25815 -2.7 -2.2 transcription termination/antitermination protein NusA compare
PFLU_RS13010 -2.7 -5.4 Fe-S biogenesis protein NfuA compare
PFLU_RS08155 -2.7 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS29095 -2.6 -19.4 polyphosphate kinase 1 compare
PFLU_RS24765 -2.6 -18.1 2-isopropylmalate synthase compare
PFLU_RS25360 -2.6 -8.5 glutamate 5-kinase compare
PFLU_RS12145 -2.6 -2.6 nuclear transport factor 2 family protein compare
PFLU_RS20515 -2.6 -3.5 amidophosphoribosyltransferase compare
PFLU_RS21240 -2.6 -1.9 hypothetical protein compare
PFLU_RS11670 -2.6 -4.3 SDR family oxidoreductase compare
PFLU_RS13540 -2.6 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS19165 -2.6 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS18645 -2.6 -2.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS18055 -2.5 -2.3 hydrolase compare
PFLU_RS03555 -2.5 -1.2 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS27305 -2.5 -8.3 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS28965 -2.5 -10.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS25730 -2.5 -16.3 PAS domain S-box protein compare
PFLU_RS24025 -2.4 -11.8 quinolinate synthase NadA compare
PFLU_RS03970 -2.4 -10.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS21300 -2.4 -5.1 cysteine hydrolase compare
PFLU_RS02000 -2.4 -17.5 penicillin-binding protein 1A compare
PFLU_RS28165 -2.4 -12.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS12580 -2.4 -8.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS08160 -2.4 -8.9 sugar transferase compare
PFLU_RS24475 -2.3 -17.1 AmpG family muropeptide MFS transporter compare
PFLU_RS18530 -2.3 -5.4 DNA translocase FtsK compare
PFLU_RS24085 -2.3 -3.1 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS23310 -2.3 -10.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS07810 -2.2 -12.4 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS04150 -2.2 -5.4 DUF1043 family protein compare
PFLU_RS26595 -2.2 -1.5 lipoprotein compare
PFLU_RS01485 -2.2 -12.4 cellulase compare
PFLU_RS25800 -2.2 -3.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS28310 -2.2 -2.3 response regulator compare
PFLU_RS28775 -2.1 -10.5 polyamine ABC transporter substrate-binding protein compare
PFLU_RS07495 -2.1 -2.5 DUF2892 domain-containing protein compare
PFLU_RS01625 -2.1 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS04325 -2.1 -13.4 ribonuclease G compare
PFLU_RS18635 -2.0 -2.9 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS22070 -2.0 -5.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS23305 -2.0 -10.1 arginine N-succinyltransferase compare
PFLU_RS08165 -2.0 -2.5 acyl carrier protein compare
PFLU_RS23070 -2.0 -1.5 50S ribosomal protein L32 compare
PFLU_RS03610 -2.0 -7.0 redox-regulated ATPase YchF compare
PFLU_RS16785 -2.0 -2.6 GAF domain-containing protein compare
PFLU_RS28760 -2.0 -11.0 ABC transporter permease subunit compare
PFLU_RS30510 -1.9 -5.1 glycosyltransferase family 4 protein compare
PFLU_RS17265 -1.9 -2.4 hypothetical protein compare
PFLU_RS12800 -1.9 -1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS27475 -1.9 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS00465 -1.9 -7.6 spore maturation protein compare
PFLU_RS28690 -1.9 -9.3 FAD-binding oxidoreductase compare
PFLU_RS23235 -1.9 -4.1 Arc family DNA-binding protein compare
PFLU_RS28390 -1.9 -6.7 methionine biosynthesis protein MetW compare
PFLU_RS14805 -1.9 -1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS14430 -1.8 -2.8 arsenate reductase ArsC compare
PFLU_RS18655 -1.8 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS27465 -1.8 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS20510 -1.8 -10.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS19170 -1.8 -4.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS08190 -1.8 -11.8 polysaccharide biosynthesis protein compare
PFLU_RS25585 -1.8 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS20285 -1.7 -4.6 MerR family transcriptional regulator compare
PFLU_RS25740 -1.7 -5.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS18615 -1.7 -2.8 NADH-quinone oxidoreductase subunit A compare
PFLU_RS00415 -1.7 -2.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS01895 -1.7 -4.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS16310 -1.7 -2.5 hypothetical protein compare
PFLU_RS31535 -1.6 -2.0 hypothetical protein compare
PFLU_RS18725 -1.6 -1.8 alpha/beta hydrolase compare
PFLU_RS03980 -1.6 -6.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS12715 -1.6 -1.1 fumarylacetoacetate hydrolase family protein compare
PFLU_RS02540 -1.6 -8.7 tRNA epoxyqueuosine(34) reductase QueG compare
PFLU_RS18675 -1.6 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS24790 -1.6 -4.1 tetratricopeptide repeat protein compare
PFLU_RS11660 -1.6 -5.2 L-arabinose ABC transporter permease AraH conserved
PFLU_RS01615 -1.6 -3.3 DUF2164 domain-containing protein compare
PFLU_RS28955 -1.6 -6.6 TIGR02449 family protein compare
PFLU_RS18625 -1.6 -6.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS05235 -1.5 -6.2 leucyl aminopeptidase compare
PFLU_RS29550 -1.5 -5.9 ATP-dependent DNA helicase RecG compare
PFLU_RS22520 -1.5 -2.7 GntR family transcriptional regulator compare
PFLU_RS08370 -1.5 -3.2 hypothetical protein compare
PFLU_RS02460 -1.5 -7.8 alpha/beta fold hydrolase compare
PFLU_RS02565 -1.5 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS19045 -1.5 -4.9 spore coat protein U domain-containing protein compare
PFLU_RS22395 -1.5 -3.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS18640 -1.5 -4.0 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS04660 -1.5 -4.8 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS08350 -1.5 -2.0 ABC transporter ATP-binding protein compare
PFLU_RS31100 -1.4 -3.9 preprotein translocase subunit SecG compare
PFLU_RS02790 -1.4 -1.5 TetR family transcriptional regulator compare
PFLU_RS26150 -1.4 -8.7 ATP-binding protein compare
PFLU_RS14830 -1.4 -5.6 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS04455 -1.4 -4.7 BolA family transcriptional regulator compare
PFLU_RS28765 -1.4 -6.1 polyamine ABC transporter ATP-binding protein compare
PFLU_RS02955 -1.4 -3.1 DUF2946 domain-containing protein compare
PFLU_RS26715 -1.4 -11.1 peptidase C13 compare
PFLU_RS21360 -1.4 -1.7 MarR family transcriptional regulator compare
PFLU_RS07275 -1.4 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS21160 -1.4 -6.2 BolA family transcriptional regulator compare
PFLU_RS11645 -1.4 -3.8 SMP-30/gluconolactonase/LRE family protein compare
PFLU_RS26950 -1.4 -6.2 outer membrane beta-barrel protein compare
PFLU_RS28385 -1.4 -6.9 homoserine O-acetyltransferase compare
PFLU_RS28325 -1.4 -6.2 energy transducer TonB compare
PFLU_RS11650 -1.4 -6.1 arabinose ABC transporter substrate-binding protein conserved
PFLU_RS02700 -1.4 -2.7 ammonia-dependent NAD(+) synthetase compare
PFLU_RS22010 -1.4 -4.8 threonine-phosphate decarboxylase compare
PFLU_RS13035 -1.4 -2.6 cobalamin biosynthesis protein CobW compare
PFLU_RS08145 -1.4 -5.0 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS18600 -1.4 -5.4 GNAT family N-acetyltransferase compare
PFLU_RS22735 -1.4 -7.4 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS01585 -1.4 -4.6 oxidative damage protection protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Arabinose across organisms