Experiment set3IT052 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS11620 +4.0 30.5 FadR family transcriptional regulator compare
PFLU_RS00460 +2.8 19.8 glutamate/aspartate:proton symporter GltP compare
PFLU_RS29480 +2.8 14.6 exodeoxyribonuclease III compare
PFLU_RS25205 +2.8 13.5 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS29810 +2.7 17.3 LysR family transcriptional regulator compare
PFLU_RS25200 +2.7 16.3 protoheme IX farnesyltransferase compare
PFLU_RS25220 +2.7 16.3 ubiquinol oxidase subunit II compare
PFLU_RS29780 +2.6 12.4 acyl-CoA thioesterase compare
PFLU_RS25215 +2.6 18.5 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS25210 +2.5 12.2 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS00435 +2.3 17.0 PAS domain-containing protein compare
PFLU_RS14715 +2.3 10.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS25865 +2.2 5.9 YhbY family RNA-binding protein compare
PFLU_RS22535 +2.1 17.3 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS31825 +2.0 5.8 hypothetical protein compare
PFLU_RS23585 +1.9 12.1 GntP family permease compare
PFLU_RS23220 +1.9 4.5 tRNA-Arg compare
PFLU_RS02340 +1.8 15.9 TonB-dependent receptor compare
PFLU_RS24175 +1.7 10.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS26835 +1.7 4.6 exodeoxyribonuclease VII small subunit compare
PFLU_RS25790 +1.7 8.0 polyribonucleotide nucleotidyltransferase compare
PFLU_RS24690 +1.7 12.7 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS23325 +1.6 9.6 GlxA family transcriptional regulator compare
PFLU_RS04020 +1.6 12.2 PTS fructose-like transporter subunit IIB compare
PFLU_RS29065 +1.6 2.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS17105 +1.6 9.6 MoxR family ATPase compare
PFLU_RS06815 +1.6 9.6 TetR family transcriptional regulator compare
PFLU_RS26955 +1.6 10.9 sugar nucleotide-binding protein compare
PFLU_RS29310 +1.6 2.8 accessory factor UbiK family protein compare
PFLU_RS11380 +1.6 2.1 sarcosine oxidase subunit delta compare
PFLU_RS15410 +1.5 3.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS04075 +1.5 2.1 hypothetical protein compare
PFLU_RS31075 +1.5 6.2 hypothetical protein compare
PFLU_RS29505 +1.5 5.0 DNA-directed RNA polymerase subunit omega compare
PFLU_RS29755 +1.5 10.9 phosphate ABC transporter ATP-binding protein compare
PFLU_RS00040 +1.5 10.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS07690 +1.5 8.0 helix-turn-helix transcriptional regulator compare
PFLU_RS00065 +1.4 7.9 lysophospholipid acyltransferase compare
PFLU_RS05020 +1.4 1.7 DUF1120 domain-containing protein compare
PFLU_RS29105 +1.4 10.8 DedA family protein compare
PFLU_RS17120 +1.4 6.4 VWA domain-containing protein compare
PFLU_RS06310 +1.4 7.5 sigma E protease regulator RseP compare
PFLU_RS21825 +1.4 9.0 ketoacyl-ACP synthase III compare
PFLU_RS17125 +1.4 7.9 VWA domain-containing protein compare
PFLU_RS17115 +1.4 7.9 DUF4381 domain-containing protein compare
PFLU_RS20730 +1.3 2.2 hypothetical protein compare
PFLU_RS01875 +1.3 1.3 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS27300 +1.3 9.3 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS04010 +1.3 8.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07630 +1.3 10.6 transglycosylase SLT domain-containing protein compare
PFLU_RS04485 +1.3 9.5 uracil phosphoribosyltransferase compare
PFLU_RS23100 +1.2 4.3 ribonuclease E compare
PFLU_RS05910 +1.2 1.6 response regulator transcription factor compare
PFLU_RS26660 +1.2 2.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS29815 +1.2 2.6 aspartate ammonia-lyase compare
PFLU_RS04140 +1.2 2.7 response regulator transcription factor compare
PFLU_RS04565 +1.2 0.8 TMEM165/GDT1 family protein compare
PFLU_RS22040 +1.2 6.5 NlpC/P60 family protein compare
PFLU_RS31590 +1.1 1.8 hypothetical protein compare
PFLU_RS04490 +1.1 3.2 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS29765 +1.1 9.5 ABC transporter permease subunit compare
PFLU_RS20290 +1.1 1.5 integration host factor subunit alpha compare
PFLU_RS31045 +1.1 6.3 ribosome modulation factor compare
PFLU_RS21925 +1.1 2.8 YecA family protein compare
PFLU_RS01315 +1.0 2.4 Hsp33 family molecular chaperone HslO compare
PFLU_RS21570 +1.0 2.8 exonuclease compare
PFLU_RS23260 +1.0 3.9 carbon storage regulator CsrA compare
PFLU_RS14775 +1.0 1.2 enoyl-CoA hydratase compare
PFLU_RS22100 +1.0 4.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFLU_RS31675 +1.0 1.5 hypothetical protein compare
PFLU_RS17130 +1.0 3.6 protein BatD compare
PFLU_RS00360 +1.0 5.8 hypothetical protein compare
PFLU_RS02575 +1.0 6.0 GTPase HflX compare
PFLU_RS23350 +1.0 6.0 ABC transporter substrate-binding protein compare
PFLU_RS00405 +1.0 3.8 cytochrome c5 family protein compare
PFLU_RS17110 +1.0 2.6 DUF58 domain-containing protein compare
PFLU_RS09100 +1.0 4.0 HAMP domain-containing protein compare
PFLU_RS29770 +1.0 6.7 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS02860 +0.9 2.0 urease subunit beta compare
PFLU_RS23430 +0.9 4.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS02115 +0.9 1.8 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS00410 +0.9 5.0 cytochrome c4 compare
PFLU_RS07520 +0.9 1.2 hypothetical protein compare
PFLU_RS31510 +0.9 1.8 transcriptional regulator compare
PFLU_RS22190 +0.9 1.2 hypothetical protein compare
PFLU_RS28395 +0.9 5.4 DUF4426 domain-containing protein compare
PFLU_RS31840 +0.9 1.1 hypothetical protein compare
PFLU_RS01660 +0.9 2.3 rhodanese-like domain-containing protein compare
PFLU_RS22385 +0.9 6.4 oxygen-independent coproporphyrinogen III oxidase compare
PFLU_RS31440 +0.9 1.6 hypothetical protein compare
PFLU_RS24330 +0.9 4.8 phosphogluconate dehydratase compare
PFLU_RS21935 +0.9 7.5 sensor histidine kinase compare
PFLU_RS31415 +0.9 3.7 hypothetical protein compare
PFLU_RS24020 +0.9 3.9 RDD family protein compare
PFLU_RS04205 +0.9 4.5 cytochrome c1 compare
PFLU_RS00870 +0.9 1.2 hypothetical protein compare
PFLU_RS14440 +0.9 1.3 hypothetical protein compare
PFLU_RS19070 +0.9 2.8 LysR family transcriptional regulator compare
PFLU_RS30730 +0.9 1.7 helix-turn-helix domain-containing protein compare
PFLU_RS05655 +0.9 1.6 DeoR/GlpR family transcriptional regulator compare
PFLU_RS04480 +0.9 6.4 uracil-xanthine permease compare
PFLU_RS26515 +0.9 7.3 AMP nucleosidase compare
PFLU_RS29385 +0.8 7.1 AsnC family transcriptional regulator compare
PFLU_RS11760 +0.8 1.9 GlxA family transcriptional regulator compare
PFLU_RS08615 +0.8 1.7 YgdI/YgdR family lipoprotein compare
PFLU_RS18000 +0.8 1.3 AhpC/TSA family protein compare
PFLU_RS29705 +0.8 3.3 rubredoxin compare
PFLU_RS04810 +0.8 5.8 LysR family transcriptional regulator compare
PFLU_RS18715 +0.8 3.8 MFS transporter compare
PFLU_RS28180 +0.8 4.2 DEAD/DEAH box helicase compare
PFLU_RS01910 +0.8 0.9 sterol-binding protein compare
PFLU_RS31315 +0.8 2.3 hypothetical protein compare
PFLU_RS23340 +0.8 6.5 ABC transporter permease compare
PFLU_RS14045 +0.8 1.8 hypothetical protein compare
PFLU_RS20025 +0.8 2.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04200 +0.8 4.9 cytochrome bc complex cytochrome b subunit compare
PFLU_RS19420 +0.8 3.0 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS04155 +0.8 3.6 alpha/beta fold hydrolase compare
PFLU_RS24280 +0.8 2.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00440 +0.8 5.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29545 +0.8 4.6 hydrogen peroxide-inducible genes activator compare
PFLU_RS21215 +0.8 1.3 YheU family protein compare
PFLU_RS10295 +0.8 3.7 HAD-IA family hydrolase compare
PFLU_RS13085 +0.8 1.9 DUF1315 family protein compare
PFLU_RS12905 +0.8 5.2 transglycosylase SLT domain-containing protein compare
PFLU_RS15910 +0.8 1.0 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS18345 +0.7 3.5 hypothetical protein compare
PFLU_RS05915 +0.7 1.9 diacylglycerol kinase compare
PFLU_RS11805 +0.7 2.6 DoxX family protein compare
PFLU_RS19855 +0.7 1.3 DUF4398 domain-containing protein compare
PFLU_RS28450 +0.7 2.0 cell division ATP-binding protein FtsE compare
PFLU_RS14760 +0.7 2.2 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS20700 +0.7 4.4 DNA/RNA non-specific endonuclease compare
PFLU_RS28820 +0.7 1.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS29100 +0.7 4.4 porphobilinogen synthase compare
PFLU_RS12755 +0.7 2.7 periplasmic heavy metal sensor compare
PFLU_RS31405 +0.7 3.9 hypothetical protein compare
PFLU_RS30615 +0.7 1.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS20970 +0.7 0.9 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS03025 +0.7 3.3 tRNA dihydrouridine synthase DusB compare
PFLU_RS09005 +0.7 5.5 molecular chaperone HtpG compare
PFLU_RS26935 +0.7 3.6 ABC transporter ATP-binding protein compare
PFLU_RS31010 +0.7 0.7 transposase compare
PFLU_RS28780 +0.7 5.6 aspartate aminotransferase family protein compare
PFLU_RS02585 +0.7 3.4 protease modulator HflC compare
PFLU_RS05375 +0.7 3.5 DUF3034 family protein compare
PFLU_RS18515 +0.7 1.1 fluoride efflux transporter CrcB compare
PFLU_RS02130 +0.7 2.2 glycosyl transferase compare
PFLU_RS02275 +0.7 0.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS22495 +0.7 5.1 GntR family transcriptional regulator compare
PFLU_RS31835 +0.7 1.4 hypothetical protein compare
PFLU_RS20095 +0.7 2.3 glyoxalase compare
PFLU_RS14050 +0.7 1.1 hypothetical protein compare
PFLU_RS23345 +0.7 4.8 ABC transporter permease compare
PFLU_RS27690 +0.7 1.5 response regulator compare
PFLU_RS28340 +0.7 1.9 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS28200 +0.7 3.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS00455 +0.7 2.6 hypothetical protein compare
PFLU_RS20790 +0.7 2.2 heme-binding protein compare
PFLU_RS21950 +0.7 1.9 hypothetical protein compare
PFLU_RS05750 +0.7 0.8 methionine--tRNA ligase compare
PFLU_RS08625 +0.7 2.2 molybdenum cofactor biosynthesis protein B compare
PFLU_RS12395 +0.7 2.0 zinc ribbon domain-containing protein compare
PFLU_RS21650 +0.7 3.7 protein phosphatase CheZ compare
PFLU_RS21965 +0.7 5.1 transporter compare
PFLU_RS25290 +0.7 2.4 hypothetical protein compare
PFLU_RS12855 +0.7 3.2 ABC transporter ATP-binding protein compare
PFLU_RS22470 +0.7 1.3 hypothetical protein compare
PFLU_RS14880 +0.7 2.5 hypothetical protein compare
PFLU_RS28910 +0.7 3.6 glycine cleavage system protein GcvH compare
PFLU_RS17970 +0.7 2.6 LysR family transcriptional regulator compare
PFLU_RS17350 +0.6 4.5 murein L,D-transpeptidase catalytic domain family protein compare
PFLU_RS31490 +0.6 0.9 hypothetical protein compare
PFLU_RS31065 +0.6 1.0 helix-turn-helix domain-containing protein compare
PFLU_RS03910 +0.6 2.3 DUF3094 family protein compare
PFLU_RS06570 +0.6 1.2 glycine zipper 2TM domain-containing protein compare
PFLU_RS09220 +0.6 3.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS13120 +0.6 0.9 hypothetical protein compare
PFLU_RS31150 +0.6 1.8 hypothetical protein compare
PFLU_RS13945 +0.6 1.0 hypothetical protein compare
PFLU_RS09720 +0.6 1.0 single-stranded DNA-binding protein compare
PFLU_RS03925 +0.6 2.3 hypothetical protein compare
PFLU_RS17930 +0.6 2.9 UDP-glucose/GDP-mannose dehydrogenase family protein compare
PFLU_RS08560 +0.6 2.6 response regulator compare
PFLU_RS15540 +0.6 2.7 glyoxalase compare
PFLU_RS31620 +0.6 1.9 integrase compare
PFLU_RS10090 +0.6 1.3 redox-sensitive transcriptional activator SoxR compare
PFLU_RS05970 +0.6 4.2 glucan biosynthesis protein D compare
PFLU_RS23015 +0.6 2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS24605 +0.6 1.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
PFLU_RS02625 +0.6 4.1 ribonuclease R compare
PFLU_RS00935 +0.6 2.9 EAL domain-containing protein compare
PFLU_RS11280 +0.6 1.9 sugar ABC transporter substrate-binding protein compare
PFLU_RS30335 +0.6 3.7 AlpA family phage regulatory protein compare
PFLU_RS04395 +0.6 2.8 ribosome-associated translation inhibitor RaiA compare
PFLU_RS14990 +0.6 2.4 helix-turn-helix transcriptional regulator compare
PFLU_RS07910 +0.6 0.9 type 1 fimbrial protein compare
PFLU_RS24135 +0.6 2.5 HIT domain-containing protein compare
PFLU_RS31545 +0.6 1.3 LysR family transcriptional regulator compare
PFLU_RS31775 +0.6 2.2 hypothetical protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Arabinose across organisms