Experiment set3IT052 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS08940 +1.5 3.5 MetS family NSS transporter small subunit compare
MMP_RS08860 +1.4 8.0 MinD/ParA family protein compare
MMP_RS08855 +1.4 11.3 hypothetical protein compare
MMP_RS09055 +1.3 2.5 CAP domain-containing protein compare
MMP_RS01285 +1.3 11.6 hypothetical protein compare
MMP_RS01280 +1.3 11.5 DUF515 domain-containing protein compare
MMP_RS01290 +1.3 11.3 class III signal peptide-containing protein compare
MMP_RS01305 +1.3 12.1 hypothetical protein compare
MMP_RS00240 +1.3 11.4 type II secretion system F family protein compare
MMP_RS00245 +1.3 11.9 type II secretion system F family protein compare
MMP_RS01295 +1.2 10.8 hypothetical protein compare
MMP_RS01310 +1.2 11.4 hypothetical protein compare
MMP_RS08675 +1.2 5.5 class III signal peptide-containing protein compare
MMP_RS01270 +1.2 10.5 prepilin peptidase compare
MMP_RS00250 +1.2 10.7 Flp pilus assembly complex ATPase component TadA compare
MMP_RS01085 +1.1 3.5 hypothetical protein compare
MMP_RS01315 +1.1 10.3 DUF2341 domain-containing protein compare
MMP_RS02605 +1.1 1.4 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS01275 +1.0 7.7 class III signal peptide-containing protein compare
MMP_RS01195 +1.0 2.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07330 +0.9 8.4 membrane protein compare
MMP_RS05635 +0.9 6.6 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS08615 +0.9 1.3 flagellar protein G compare
MMP_RS06035 +0.9 6.7 glycosyltransferase family 2 protein compare
MMP_RS06760 +0.8 1.9 hypothetical protein compare
MMP_RS08580 +0.8 5.3 flagellin compare
MMP_RS01790 +0.7 3.5 restriction endonuclease compare
MMP_RS05865 +0.7 1.4 hypothetical protein compare
MMP_RS05985 +0.7 2.0 hypothetical protein compare
MMP_RS04125 +0.7 3.5 TetR/AcrR family transcriptional regulator compare
MMP_RS00535 +0.7 1.8 TIGR00375 family protein compare
MMP_RS00570 +0.7 1.1 protein-L-isoaspartate O-methyltransferase compare
MMP_RS09045 +0.7 5.2 class III signal peptide-containing protein compare
MMP_RS00130 +0.7 1.2 nickel-responsive transcriptional regulator NikR compare
MMP_RS06720 +0.7 3.3 response regulator transcription factor compare
MMP_RS07415 +0.7 3.7 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS00655 +0.7 3.0 hypothetical protein compare
MMP_RS04410 +0.6 2.1 hypothetical protein compare
MMP_RS00140 +0.6 3.7 DUF192 domain-containing protein compare
MMP_RS08845 +0.6 3.9 archaellum operon transcriptional activator EarA family protein compare
MMP_RS01570 +0.6 1.4 hypothetical protein compare
MMP_RS01255 +0.6 2.3 amino acid ABC transporter ATP-binding protein compare
MMP_RS08410 +0.6 2.4 DUF169 domain-containing protein compare
MMP_RS07615 +0.6 3.5 energy-coupling factor ABC transporter permease compare
MMP_RS02530 +0.6 2.4 type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family compare
MMP_RS08380 +0.6 2.8 phosphatase PAP2 family protein compare
MMP_RS06840 +0.6 0.7 DNA-directed RNA polymerase subunit N compare
MMP_RS06140 +0.5 2.2 radical SAM protein compare
MMP_RS08400 +0.5 1.4 MJ0307 family thioredoxin compare
MMP_RS08750 +0.5 1.1 hypothetical protein compare
MMP_RS07765 +0.5 2.8 sodium:alanine symporter family protein compare
MMP_RS03080 +0.5 0.9 universal stress protein compare
MMP_RS07815 +0.5 1.0 DUF2120 domain-containing protein compare
MMP_RS01870 +0.5 2.2 acyl-CoA dehydratase activase compare
MMP_RS06715 +0.5 4.1 cache domain-containing protein compare
MMP_RS06385 +0.5 2.0 hypothetical protein compare
MMP_RS07880 +0.5 2.4 AAA family ATPase compare
MMP_RS01675 +0.5 1.2 hypothetical protein compare
MMP_RS01125 +0.5 2.1 thioredoxin family protein compare
MMP_RS06175 +0.5 2.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS05365 +0.5 1.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS01630 +0.5 3.2 N-glycosylase/DNA lyase compare
MMP_RS03550 +0.4 1.0 DUF2124 domain-containing protein compare
MMP_RS01655 +0.4 1.2 DsrE family protein compare
MMP_RS00690 +0.4 2.0 MBL fold metallo-hydrolase compare
MMP_RS07775 +0.4 1.5 alanine dehydrogenase compare
MMP_RS03320 +0.4 1.0 metal-dependent transcriptional regulator compare
MMP_RS00345 +0.4 2.0 DUF2666 domain-containing protein compare
MMP_RS07800 +0.4 1.9 ATP-binding cassette domain-containing protein compare
MMP_RS08285 +0.4 2.3 serine/threonine protein kinase compare
MMP_RS02290 +0.4 2.2 MBL fold metallo-hydrolase compare
MMP_RS07840 +0.4 1.6 ribonuclease III compare
MMP_RS08080 +0.4 1.8 YchF/TatD family DNA exonuclease compare
MMP_RS06050 +0.4 2.0 ZIP family metal transporter compare
MMP_RS01320 +0.4 1.7 hypothetical protein compare
MMP_RS03585 +0.4 1.7 Hsp20/alpha crystallin family protein compare
MMP_RS02625 +0.4 2.2 ribonuclease H-like domain-containing protein compare
MMP_RS08395 +0.4 1.4 DsrE family protein compare
MMP_RS01650 +0.4 0.4 sulfurtransferase TusA family protein compare
MMP_RS08290 +0.4 1.9 DNA-binding protein Alba compare
MMP_RS08850 +0.4 3.2 hypothetical protein compare
MMP_RS08980 +0.4 1.7 hypothetical protein compare
MMP_RS03625 +0.4 1.7 cell wall-binding protein compare
MMP_RS06935 +0.4 1.6 protease complex subunit PrcB family protein compare
MMP_RS05965 +0.4 1.1 carboxymuconolactone decarboxylase family protein compare
MMP_RS01490 +0.4 1.6 tetratricopeptide repeat protein compare
MMP_RS01075 +0.4 0.5 hypothetical protein compare
MMP_RS06100 +0.4 2.1 GNAT family N-acetyltransferase compare
MMP_RS08265 +0.4 2.1 rubrerythrin compare
MMP_RS02805 +0.3 0.7 HEPN domain-containing protein compare
MMP_RS06970 +0.3 1.7 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS03670 +0.3 1.8 DUF1890 domain-containing protein compare
MMP_RS06990 +0.3 1.8 CatB-related O-acetyltransferase compare
MMP_RS02610 +0.3 1.3 DUF2162 domain-containing protein compare
MMP_RS04145 +0.3 0.8 hypothetical protein compare
MMP_RS05780 +0.3 2.3 multidrug resistance efflux transporter family protein compare
MMP_RS04015 +0.3 1.0 hypothetical protein compare
MMP_RS00090 +0.3 1.4 CoA-binding protein compare
MMP_RS08275 +0.3 1.9 hypothetical protein compare
MMP_RS02425 +0.3 1.9 hypothetical protein compare
MMP_RS02965 +0.3 1.6 carboxymuconolactone decarboxylase family protein compare
MMP_RS02045 +0.3 0.7 tRNA-Met compare
MMP_RS00400 +0.3 2.2 tributyrin esterase compare
MMP_RS07960 +0.3 2.2 sugar phosphate isomerase/epimerase compare
MMP_RS07805 +0.3 1.5 ABC transporter permease compare
MMP_RS00665 +0.3 1.8 hypothetical protein compare
MMP_RS08455 +0.3 1.5 multiprotein bridging factor aMBF1 compare
MMP_RS01135 +0.3 2.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS02215 +0.3 2.0 ECF transporter S component compare
MMP_RS08390 +0.3 1.3 DUF5400 domain-containing protein compare
MMP_RS06655 +0.3 1.9 glycoside hydrolase family 15 protein compare
MMP_RS06115 +0.3 1.9 class II aldolase/adducin family protein compare
MMP_RS07900 +0.3 0.7 YeeE/YedE family protein compare
MMP_RS01850 +0.3 1.6 phosphate ABC transporter substrate-binding protein compare
MMP_RS08665 +0.3 2.5 hypothetical protein compare
MMP_RS07715 +0.3 2.0 YfcE family phosphodiesterase compare
MMP_RS08075 +0.3 1.9 DUF749 domain-containing protein compare
MMP_RS04255 +0.3 1.2 coenzyme F420 hydrogenase subunit beta compare
MMP_RS01770 +0.3 2.0 ATP-dependent endonuclease compare
MMP_RS01185 +0.3 1.4 hypothetical protein compare
MMP_RS04995 +0.3 1.5 hypothetical protein compare
MMP_RS00395 +0.3 0.7 MGMT family protein compare
MMP_RS05975 +0.3 0.6 hypothetical protein compare
MMP_RS06090 +0.3 1.2 iron ABC transporter permease compare
MMP_RS02770 +0.3 1.2 hypothetical protein compare
MMP_RS06320 +0.3 1.4 hypothetical protein compare
MMP_RS03220 +0.3 1.1 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS01635 +0.3 1.3 thiamine pyrophosphate-dependent enzyme compare
MMP_RS07890 +0.3 0.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS04205 +0.3 1.8 carboxymuconolactone decarboxylase family protein compare
MMP_RS02260 +0.3 1.6 lactate utilization protein compare
MMP_RS08130 +0.3 2.0 IGHMBP2 family helicase compare
MMP_RS06300 +0.3 1.7 ABC transporter substrate-binding protein compare
MMP_RS06860 +0.3 0.7 4Fe-4S binding protein compare
MMP_RS05685 +0.3 1.3 winged helix-turn-helix domain-containing protein compare
MMP_RS04735 +0.3 1.5 tautomerase family protein compare
MMP_RS03490 +0.3 0.7 DUF2115 domain-containing protein compare
MMP_RS07550 +0.3 1.4 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS01215 +0.3 1.7 sodium/proline symporter PutP compare
MMP_RS07590 +0.3 1.9 hypothetical protein compare
MMP_RS03120 +0.3 0.9 hypothetical protein compare
MMP_RS06910 +0.3 1.7 RlmF-related methyltransferase compare
MMP_RS02540 +0.3 1.1 DUF2283 domain-containing protein compare
MMP_RS07835 +0.3 1.4 TldD/PmbA family protein compare
MMP_RS02695 +0.3 1.4 formylmethanofuran dehydrogenase subunit A compare
MMP_RS08480 +0.3 2.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS08405 +0.2 1.8 MFS transporter compare
MMP_RS06070 +0.2 2.1 iron ABC transporter substrate-binding protein compare
MMP_RS07535 +0.2 1.6 4Fe-4S binding protein compare
MMP_RS07720 +0.2 1.8 4Fe-4S binding protein compare
MMP_RS06915 +0.2 0.9 metallophosphoesterase compare
MMP_RS07595 +0.2 1.8 hypothetical protein compare
MMP_RS04610 +0.2 0.8 Dabb family protein compare
MMP_RS02295 +0.2 1.6 TatD family hydrolase compare
MMP_RS02255 +0.2 1.3 hypothetical protein compare
MMP_RS05490 +0.2 1.2 IMPACT family protein compare
MMP_RS03125 +0.2 1.6 cell division ATPase MinD compare
MMP_RS05715 +0.2 1.3 hypothetical protein compare
MMP_RS08385 +0.2 0.9 ABC transporter substrate-binding protein compare
MMP_RS03535 +0.2 0.6 helix-turn-helix transcriptional regulator compare
MMP_RS05785 +0.2 1.8 ATP-binding protein compare
MMP_RS00670 +0.2 1.3 TIM barrel protein compare
MMP_RS06665 +0.2 1.2 glycogen/starch synthase compare
MMP_RS07530 +0.2 2.0 4Fe-4S binding protein compare
MMP_RS02545 +0.2 0.5 hypothetical protein compare
MMP_RS05935 +0.2 1.9 uroporphyrinogen decarboxylase family protein compare
MMP_RS08310 +0.2 0.6 TMEM165/GDT1 family protein compare
MMP_RS06365 +0.2 0.8 hypothetical protein compare
MMP_RS00990 +0.2 0.9 hypothetical protein compare
MMP_RS06515 +0.2 0.9 UPF0489 family protein compare
MMP_RS05115 +0.2 1.5 50S ribosomal protein L11 methyltransferase compare
MMP_RS07855 +0.2 1.6 class I SAM-dependent methyltransferase compare
MMP_RS02790 +0.2 0.4 class III signal peptide-containing protein compare
MMP_RS02170 +0.2 1.0 CBS domain-containing protein compare
MMP_RS05035 +0.2 1.4 hypothetical protein compare
MMP_RS05235 +0.2 1.2 exodeoxyribonuclease III compare
MMP_RS07675 +0.2 2.0 S-layer protein compare
MMP_RS02735 +0.2 1.0 MBL fold metallo-hydrolase compare
MMP_RS06250 +0.2 1.4 hypothetical protein compare
MMP_RS07910 +0.2 1.1 NAD(P)H-hydrate dehydratase compare
MMP_RS02320 +0.2 1.3 glutamate-cysteine ligase family protein compare
MMP_RS01010 +0.2 1.4 DUF4352 domain-containing protein compare
MMP_RS05595 +0.2 1.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08320 +0.2 1.1 molybdopterin molybdotransferase MoeA compare
MMP_RS09060 +0.2 1.8 hypothetical protein compare
MMP_RS00965 +0.2 0.5 hypothetical protein compare
MMP_RS07155 +0.2 1.5 MFS transporter compare
MMP_RS05270 +0.2 1.6 PEGA domain-containing protein compare
MMP_RS05675 +0.2 0.9 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS05095 +0.2 0.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS02025 +0.2 1.4 DNA-directed DNA polymerase compare
MMP_RS01140 +0.2 0.6 molybdate ABC transporter permease subunit compare
MMP_RS08250 +0.2 1.2 pyruvate kinase compare
MMP_RS08640 +0.2 1.6 TIM barrel protein compare
MMP_RS06700 +0.2 1.4 hypothetical protein compare
MMP_RS06650 +0.2 1.0 glycoside hydrolase family 57 protein compare
MMP_RS04290 +0.2 0.7 4Fe-4S binding protein compare
MMP_RS05670 +0.2 1.4 phosphate ABC transporter permease PstA compare
MMP_RS00155 +0.2 1.3 heavy metal-binding domain-containing protein compare
MMP_RS06305 +0.2 1.5 transporter substrate-binding domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms