Experiment set3IT051 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with MreB Perturbing Compound A22 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -3.2 -6.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2753 -3.1 -4.9 HtrA protease/chaperone protein compare
Pf6N2E2_4071 -3.0 -5.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5006 -2.7 -9.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3264 -2.5 -4.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3834 -2.5 -10.0 Lipoprotein NlpD compare
Pf6N2E2_4072 -2.4 -6.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2756 -2.3 -8.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5001 -2.3 -3.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3060 -2.3 -4.8 Outer membrane protein H precursor compare
Pf6N2E2_4075 -2.3 -6.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_464 -2.1 -3.8 Sensory histidine kinase QseC compare
Pf6N2E2_3461 -1.9 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2752 -1.8 -9.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4074 -1.8 -9.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5780 -1.8 -8.8 Periplasmic protease compare
Pf6N2E2_3664 -1.7 -8.6 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4162 -1.7 -3.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4153 -1.6 -2.3 Sensory box histidine kinase compare
Pf6N2E2_4352 -1.6 -3.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4585 -1.6 -10.1 Cell division protein FtsX compare
Pf6N2E2_3062 -1.6 -5.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4611 -1.5 -4.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3833 -1.5 -4.7 hypothetical protein compare
Pf6N2E2_4418 -1.5 -1.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3611 -1.5 -2.4 HflC protein compare
Pf6N2E2_5316 -1.4 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4584 -1.4 -3.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2369 -1.4 -4.2 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5727 -1.4 -4.5 FIG00955360: hypothetical protein compare
Pf6N2E2_2526 -1.4 -6.0 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_2967 -1.4 -2.4 Cold shock protein CspA compare
Pf6N2E2_5252 -1.3 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_5255 -1.3 -9.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_2261 -1.3 -6.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3373 -1.3 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_178 -1.3 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_6029 -1.2 -3.8 hypothetical protein compare
Pf6N2E2_463 -1.2 -4.8 Transcriptional regulatory protein RstA compare
Pf6N2E2_146 -1.2 -2.5 Transcriptional regulator, MarR family compare
Pf6N2E2_5771 -1.2 -4.6 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5605 -1.2 -3.0 FxsA protein compare
Pf6N2E2_3260 -1.2 -3.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2473 -1.2 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_2746 -1.2 -4.3 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2869 -1.1 -1.6 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_1083 -1.1 -2.6 hypothetical protein compare
Pf6N2E2_2971 -1.1 -8.9 AmpG permease compare
Pf6N2E2_4187 -1.1 -3.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3258 -1.1 -4.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5428 -1.1 -5.9 DNA recombination and repair protein RecO compare
Pf6N2E2_4273 -1.1 -5.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2281 -1.1 -2.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4838 -1.1 -6.2 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_1886 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_3351 -1.0 -3.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4809 -1.0 -7.8 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2306 -1.0 -2.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2640 -1.0 -1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4969 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_2824 -1.0 -6.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5584 -1.0 -2.6 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_5111 -1.0 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2181 -1.0 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1692 -1.0 -2.2 transporter, LysE family compare
Pf6N2E2_642 -0.9 -2.4 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_5171 -0.9 -7.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1660 -0.9 -2.3 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_3642 -0.9 -4.4 lipoprotein, putative compare
Pf6N2E2_4433 -0.9 -5.4 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) compare
Pf6N2E2_6047 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_3344 -0.9 -3.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_1091 -0.9 -2.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_2488 -0.9 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5086 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_737 -0.9 -0.9 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3257 -0.9 -2.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5956 -0.9 -3.6 FIG004453: protein YceG like compare
Pf6N2E2_6090 -0.9 -1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_1705 -0.9 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2933 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_2940 -0.9 -2.5 OmpA family protein compare
Pf6N2E2_3301 -0.8 -6.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_4416 -0.8 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_189 -0.8 -2.0 regulatory protein, putative compare
Pf6N2E2_2825 -0.8 -2.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5704 -0.8 -2.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2499 -0.8 -2.2 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_5182 -0.8 -4.2 Paraquat-inducible protein A compare
Pf6N2E2_2934 -0.8 -2.2 lipoprotein, putative compare
Pf6N2E2_5919 -0.8 -1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_5452 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4659 -0.8 -2.4 Lipoprotein, putative compare
Pf6N2E2_1055 -0.8 -4.3 Transcriptional regulator MexT compare
Pf6N2E2_5181 -0.8 -5.7 Paraquat-inducible protein A compare
Pf6N2E2_5506 -0.8 -4.4 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_4580 -0.8 -4.5 FIG015287: Zinc protease compare
Pf6N2E2_127 -0.7 -1.2 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1782 -0.7 -1.9 STAS domain protein compare
Pf6N2E2_3569 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_5554 -0.7 -2.8 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_3665 -0.7 -0.9 serine/threonine protein kinase compare
Pf6N2E2_2335 -0.7 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_2501 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_4092 -0.7 -1.8 FIG00954395: hypothetical protein compare
Pf6N2E2_672 -0.7 -2.0 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_5794 -0.7 -1.1 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4993 -0.7 -1.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3240 -0.7 -1.4 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_896 -0.7 -2.4 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_5346 -0.7 -1.8 rRNA small subunit methyltransferase I compare
Pf6N2E2_4204 -0.7 -1.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2318 -0.7 -3.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_6100 -0.7 -1.7 tRNA-Val-TAC compare
Pf6N2E2_4307 -0.7 -2.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2156 -0.7 -2.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_2992 -0.7 -2.9 Regulatory protein RecX compare
Pf6N2E2_2106 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4999 -0.7 -2.9 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4810 -0.7 -2.7 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_2723 -0.7 -2.3 YcgN (Fragment) compare
Pf6N2E2_4353 -0.7 -2.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5902 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_440 -0.7 -1.5 FIG00954920: hypothetical protein compare
Pf6N2E2_1140 -0.7 -2.0 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_967 -0.6 -2.1 DNA repair protein RadC compare
Pf6N2E2_3498 -0.6 -2.5 FIG00953349: hypothetical protein compare
Pf6N2E2_5705 -0.6 -1.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2552 -0.6 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5183 -0.6 -4.7 Paraquat-inducible protein B compare
Pf6N2E2_3560 -0.6 -2.5 membrane protein, putative compare
Pf6N2E2_55 -0.6 -1.3 Probable hydrolase compare
Pf6N2E2_2440 -0.6 -1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5444 -0.6 -2.4 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_4479 -0.6 -1.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_34 -0.6 -2.6 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_1603 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_5242 -0.6 -1.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2734 -0.6 -1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_81 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_2527 -0.6 -1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1153 -0.6 -2.1 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_827 -0.6 -1.5 probable dioxygenase compare
Pf6N2E2_4263 -0.6 -2.4 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_5943 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_3663 -0.6 -3.3 Glycosyl transferase compare
Pf6N2E2_384 -0.6 -1.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4073 -0.6 -2.4 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_1848 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_6164 -0.6 -0.9 tRNA-Val-TAC compare
Pf6N2E2_5816 -0.6 -1.1 Smr domain protein compare
Pf6N2E2_3460 -0.6 -0.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3004 -0.6 -1.1 Prophage baseplate assembly protein V compare
Pf6N2E2_2072 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_1661 -0.6 -2.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4346 -0.6 -4.0 ABC-type antimicrobial peptide transport system, permease component compare
Pf6N2E2_1385 -0.6 -1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_5128 -0.6 -1.8 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_48 -0.6 -2.2 FIG00955661: hypothetical protein compare
Pf6N2E2_3219 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_2300 -0.6 -2.0 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_361 -0.6 -2.1 Peptide ABC transporter, permease protein compare
Pf6N2E2_3493 -0.6 -2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1116 -0.6 -1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4397 -0.6 -1.6 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_1305 -0.6 -1.9 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_4432 -0.6 -2.7 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
Pf6N2E2_251 -0.6 -2.5 transcriptional regulator compare
Pf6N2E2_4540 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_2508 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_1624 -0.6 -1.7 MbtH-like protein compare
Pf6N2E2_1859 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_4609 -0.6 -2.2 UPF0301 protein YqgE compare
Pf6N2E2_2823 -0.6 -1.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5616 -0.6 -2.3 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf6N2E2_6065 -0.6 -1.1 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5509 -0.6 -1.9 FIG00955586: hypothetical protein compare
Pf6N2E2_3529 -0.6 -1.4 Toxin A compare
Pf6N2E2_4773 -0.6 -0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_6018 -0.6 -2.2 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3666 -0.6 -2.5 InaA protein compare
Pf6N2E2_5646 -0.6 -0.8 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1328 -0.6 -2.5 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2413 -0.6 -1.0 FIG074102: hypothetical protein compare
Pf6N2E2_6022 -0.6 -1.4 StbE replicon stabilization toxin compare
Pf6N2E2_2591 -0.6 -2.8 Flagellar assembly protein FliH compare
Pf6N2E2_669 -0.6 -2.3 Nuclease inhibitor compare
Pf6N2E2_2010 -0.5 -0.8 hypothetical protein compare
Pf6N2E2_3849 -0.5 -1.2 FIG00954739: hypothetical protein compare
Pf6N2E2_3923 -0.5 -2.2 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_5508 -0.5 -1.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2384 -0.5 -2.1 CmpX compare
Pf6N2E2_5609 -0.5 -2.3 DNA-binding response regulator ColR compare
Pf6N2E2_2273 -0.5 -2.4 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf6N2E2_5339 -0.5 -2.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1718 -0.5 -1.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_3021 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_1435 -0.5 -0.7 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1477 -0.5 -2.5 hypothetical protein compare
Pf6N2E2_5414 -0.5 -3.9 Nucleoid-associated protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress MreB Perturbing Compound A22 across organisms