Experiment set3IT051 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
AO353_12090 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20625 -3.6 -2.5 3-isopropylmalate dehydratase compare
AO353_20540 -3.4 -7.3 aromatic amino acid aminotransferase compare
AO353_07220 -3.4 -6.0 anthranilate synthase compare
AO353_07210 -3.4 -5.0 indole-3-glycerol-phosphate synthase compare
AO353_07230 -3.2 -11.3 anthranilate synthase compare
AO353_20635 -3.2 -8.2 3-isopropylmalate dehydrogenase compare
AO353_12070 -3.2 -6.7 imidazoleglycerol-phosphate dehydratase compare
AO353_05115 -3.2 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12810 -3.2 -12.6 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
AO353_22820 -3.1 -14.4 NAD-glutamate dehydrogenase compare
AO353_24130 -3.1 -3.4 hypothetical protein compare
AO353_02070 -3.0 -6.8 prephenate dehydratase compare
AO353_13070 -3.0 -4.9 phosphoserine phosphatase compare
AO353_05110 -2.9 -8.5 histidinol dehydrogenase compare
AO353_20695 -2.9 -6.0 O-succinylhomoserine sulfhydrylase compare
AO353_13165 -2.9 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_10670 -2.9 -6.1 shikimate dehydrogenase compare
AO353_20665 -2.8 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14505 -2.8 -9.6 ketol-acid reductoisomerase compare
AO353_08185 -2.8 -7.9 methionine biosynthesis protein MetW compare
AO353_12075 -2.8 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20620 -2.8 -6.5 isopropylmalate isomerase compare
AO353_02075 -2.8 -6.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08475 -2.7 -6.7 phosphoserine phosphatase compare
AO353_08180 -2.7 -10.2 homoserine O-acetyltransferase compare
AO353_12360 -2.6 -7.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12365 -2.6 -3.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_07215 -2.6 -6.0 anthranilate phosphoribosyltransferase compare
AO353_08685 -2.5 -5.3 N-acetylglutamate synthase compare
AO353_12085 -2.5 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08345 -2.5 -5.5 dihydroxy-acid dehydratase compare
AO353_14500 -2.5 -4.4 acetolactate synthase 3 regulatory subunit compare
AO353_22800 -2.5 -3.5 sulfite reductase compare
AO353_01375 -2.5 -6.2 phosphate acyltransferase compare
AO353_04810 -2.5 -3.1 hypothetical protein compare
AO353_15925 -2.5 -11.9 2-isopropylmalate synthase compare
AO353_09240 -2.4 -2.3 acetylglutamate kinase compare
AO353_04105 -2.4 -6.6 argininosuccinate synthase compare
AO353_14495 -2.4 -7.6 acetolactate synthase 3 catalytic subunit compare
AO353_10710 -2.4 -3.9 tryptophan synthase subunit beta compare
AO353_04155 -2.3 -8.7 ornithine carbamoyltransferase compare
AO353_12500 -2.2 -1.5 shikimate kinase compare
AO353_08510 -2.2 -4.1 3-phosphoglycerate dehydrogenase compare
AO353_12460 -2.2 -6.1 malate dehydrogenase compare
AO353_09000 -2.2 -4.0 argininosuccinate lyase compare
AO353_08015 -2.1 -5.6 5,10-methylenetetrahydrofolate reductase compare
AO353_14400 -2.0 -3.4 Fis family transcriptional regulator compare
AO353_11775 -2.0 -7.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07155 -2.0 -5.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02685 -2.0 -3.8 phosphoribosylglycinamide formyltransferase compare
AO353_05420 -1.8 -2.0 peptide chain release factor 3 compare
AO353_00430 -1.8 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_16940 -1.7 -4.3 deoxycytidine triphosphate deaminase compare
AO353_12420 -1.7 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_08470 -1.7 -3.9 RNA pyrophosphohydrolase compare
AO353_20175 -1.7 -2.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_11165 -1.7 -7.9 hypothetical protein compare
AO353_10705 -1.7 -3.3 tryptophan synthase subunit alpha compare
AO353_08780 -1.7 -6.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03590 -1.6 -2.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_10945 -1.6 -3.2 cytochrome C compare
AO353_14370 -1.6 -4.0 glucose-6-phosphate isomerase compare
AO353_06490 -1.6 -3.6 nicotinate-nucleotide adenylyltransferase compare
AO353_15185 -1.6 -4.3 ATPase compare
AO353_09890 -1.6 -4.7 phosphate ABC transporter ATP-binding protein compare
AO353_19060 -1.5 -4.0 CysB family transcriptional regulator compare
AO353_07445 -1.5 -2.1 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_16495 -1.5 -4.8 zinc metallopeptidase RseP compare
AO353_14410 -1.5 -6.1 MFS transporter compare
AO353_00660 -1.4 -2.4 transcriptional regulator compare
AO353_03795 -1.4 -3.5 fumarate hydratase compare
AO353_15295 -1.4 -4.8 division/cell wall cluster transcriptional repressor MraZ compare
AO353_17640 -1.4 -2.2 serine peptidase compare
AO353_00825 -1.4 -2.9 porin compare
AO353_03630 -1.4 -7.9 porin compare
AO353_14405 -1.4 -7.8 ATPase compare
AO353_08885 -1.4 -10.2 polyphosphate kinase compare
AO353_04190 -1.3 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_24260 -1.3 -2.3 hypothetical protein compare
AO353_06045 -1.3 -4.3 exodeoxyribonuclease V subunit beta compare
AO353_14420 -1.3 -2.5 molecular chaperone DnaK compare
AO353_04220 -1.3 -4.2 chemotaxis protein CheY compare
AO353_09135 -1.3 -2.3 cytochrome C compare
AO353_07355 -1.3 -3.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_01550 -1.3 -4.3 hypothetical protein compare
AO353_23495 -1.2 -1.9 SAM-dependent methyltransferase compare
AO353_06050 -1.2 -4.1 exodeoxyribonuclease V subunit gamma compare
AO353_24745 -1.2 -2.0 hypothetical protein compare
AO353_15260 -1.2 -4.3 stringent starvation protein A compare
AO353_28055 -1.2 -2.3 hypothetical protein compare
AO353_20585 -1.2 -2.4 TetR family transcriptional regulator compare
AO353_12690 -1.2 -1.4 acyl carrier protein compare
AO353_12115 -1.2 -1.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14775 -1.1 -3.6 hypothetical protein compare
AO353_15900 -1.1 -1.8 GTP-binding protein compare
AO353_16530 -1.1 -1.5 ribonuclease HII compare
AO353_02720 -1.1 -4.1 cysteine synthase compare
AO353_19360 -1.1 -2.0 peroxiredoxin compare
AO353_20565 -1.1 -1.6 tRNA-Ala compare
AO353_27710 -1.1 -1.6 DNA repair protein compare
AO353_02640 -1.1 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_17035 -1.1 -3.5 hypothetical protein compare
AO353_20170 -1.1 -2.6 trigger factor compare
AO353_05195 -1.1 -5.8 glmZ(sRNA)-inactivating NTPase compare
AO353_07645 -1.0 -1.5 sarcosine oxidase subunit gamma compare
AO353_13925 -1.0 -1.9 XRE family transcriptional regulator compare
AO353_02250 -1.0 -1.9 chorismate synthase compare
AO353_26165 -1.0 -2.7 hypothetical protein compare
AO353_23955 -1.0 -2.4 RND transporter compare
AO353_00650 -1.0 -2.1 cytochrome biogenesis protein compare
AO353_14150 -1.0 -1.7 peptidylprolyl isomerase compare
AO353_23245 -1.0 -1.9 DNA-3-methyladenine glycosylase compare
AO353_28380 -1.0 -2.5 GntR family transcriptional regulator compare
AO353_16270 -1.0 -7.4 histidine kinase compare
AO353_06405 -1.0 -3.4 hypothetical protein compare
AO353_05695 -1.0 -6.5 transcriptional regulator PdhR compare
AO353_12105 -0.9 -3.3 peptidase S41 compare
AO353_08115 -0.9 -3.4 energy transducer TonB compare
AO353_22985 -0.9 -2.2 hypothetical protein compare
AO353_05105 -0.9 -5.3 histidinol-phosphate aminotransferase compare
AO353_10430 -0.9 -2.4 chromosome partitioning protein ParB compare
AO353_13640 -0.9 -2.8 histidine kinase compare
AO353_14990 -0.9 -1.7 hypothetical protein compare
AO353_00635 -0.9 -2.3 hypothetical protein compare
AO353_13390 -0.9 -5.2 N-acylglucosamine 2-epimerase compare
AO353_15445 -0.9 -2.2 disulfide bond formation protein B compare
AO353_00750 -0.9 -2.0 GntR family transcriptional regulator compare
AO353_10730 -0.9 -1.2 hypothetical protein compare
AO353_16290 -0.9 -5.4 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) compare
AO353_23725 -0.9 -3.0 hypothetical protein compare
AO353_05325 -0.9 -2.9 GntR family transcriptional regulator compare
AO353_16805 -0.9 -3.1 recombinase RecA compare
AO353_04355 -0.9 -1.3 homoserine dehydrogenase compare
AO353_02090 -0.9 -4.6 N-ethylammeline chlorohydrolase compare
AO353_05230 -0.9 -4.6 ribonuclease G compare
AO353_19145 -0.9 -2.6 protease HtpX compare
AO353_13355 -0.9 -3.8 ABC transporter ATP-binding protein compare
AO353_13600 -0.9 -2.3 precorrin-6Y C5,15-methyltransferase compare
AO353_09040 -0.9 -1.1 diaminopimelate epimerase compare
AO353_10445 -0.9 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_05075 -0.9 -4.8 adenylylsulfate kinase compare
AO353_21625 -0.9 -1.8 Fe/S biogenesis protein NfuA compare
AO353_25335 -0.9 -1.5 malonate decarboxylase acyl carrier protein compare
AO353_13350 -0.9 -5.9 branched-chain amino acid ABC transporter permease conserved
AO353_06425 -0.9 -2.3 lipoyl synthase compare
AO353_08600 -0.9 -2.2 TetR family transcriptional regulator compare
AO353_12020 -0.8 -2.0 hypothetical protein compare
AO353_16280 -0.8 -3.7 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_17110 -0.8 -2.7 ABC transporter ATP-binding protein compare
AO353_07315 -0.8 -1.4 rRNA methyltransferase compare
AO353_05150 -0.8 -2.6 ABC transporter ATP-binding protein compare
AO353_13345 -0.8 -5.8 branched-chain amino acid transporter permease subunit LivH compare
AO353_13405 -0.8 -1.9 urease accessory protein UreF compare
AO353_02630 -0.8 -2.0 5,6-dimethylbenzimidazole synthase compare
AO353_23945 -0.8 -1.7 hypothetical protein compare
AO353_22415 -0.8 -2.1 alcohol dehydrogenase compare
AO353_20200 -0.8 -1.9 peptidylprolyl isomerase compare
AO353_27675 -0.8 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_08100 -0.8 -2.2 chemotaxis protein CheY compare
AO353_04230 -0.8 -2.4 chemotaxis protein CheW compare
AO353_05080 -0.8 -4.6 sulfate adenylyltransferase compare
AO353_09905 -0.8 -4.7 phosphate-binding protein compare
AO353_27435 -0.8 -1.4 hypothetical protein compare
AO353_13340 -0.8 -5.8 amino acid ABC transporter substrate-binding protein compare
AO353_06460 -0.8 -3.7 hypothetical protein compare
AO353_07250 -0.8 -1.3 polyamine ABC transporter permease compare
AO353_11850 -0.8 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_29305 -0.8 -2.8 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO353_18705 -0.8 -2.5 anti-anti-sigma factor compare
AO353_16265 -0.8 -3.1 Fis family transcriptional regulator compare
AO353_16285 -0.8 -3.7 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) compare
AO353_03210 -0.8 -2.0 GNAT family acetyltransferase compare
AO353_02710 -0.8 -4.3 (p)ppGpp synthetase compare
AO353_15385 -0.8 -1.7 hypothetical protein compare
AO353_00835 -0.7 -2.9 transporter compare
AO353_21905 -0.7 -1.7 hypothetical protein compare
AO353_06040 -0.7 -1.7 exodeoxyribonuclease V subunit alpha compare
AO353_19180 -0.7 -2.5 GAF domain-containing protein compare
AO353_23905 -0.7 -2.0 GntR family transcriptional regulator compare
AO353_12935 -0.7 -2.0 glycosyltransferase compare
AO353_25355 -0.7 -1.8 hypothetical protein compare
AO353_28815 -0.7 -1.7 hypothetical protein compare
AO353_13605 -0.7 -4.2 oxidoreductase compare
AO353_13160 -0.7 -0.9 membrane protease HflC compare
AO353_09320 -0.7 -3.9 ATP-dependent DNA helicase RecG compare
AO353_01930 -0.7 -2.6 2-hydroxy-3-oxopropionate reductase compare
AO353_10950 -0.7 -4.4 thiol:disulfide interchange protein compare
AO353_08835 -0.7 -4.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_05135 -0.7 -3.7 toluene tolerance protein compare
AO353_02465 -0.7 -1.2 hypothetical protein compare
AO353_26945 -0.7 -1.2 transcriptional regulator compare
AO353_25845 -0.7 -1.3 GNAT family acetyltransferase compare
AO353_10435 -0.7 -4.0 chromosome partitioning protein compare
AO353_20480 -0.7 -2.3 hypothetical protein compare
AO353_21945 -0.7 -1.6 protein nirL compare
AO353_17520 -0.7 -1.9 hypothetical protein compare
AO353_26045 -0.7 -1.2 hypothetical protein compare
AO353_19025 -0.7 -4.8 acetyltransferase compare
AO353_09775 -0.7 -2.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Proline in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Proline across organisms