Experiment set3IT051 for Shewanella loihica PV-4
LB with Sodium Chlorite 200 mM
Group: stressMedia: LB + Sodium Chlorite (200 mM)
Culturing: PV4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Adam on 12/11/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 812 D1,D2
Specific Phenotypes
For 7 genes in this experiment
For stress Sodium Chlorite in Shewanella loihica PV-4
For stress Sodium Chlorite across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Molybdenum cofactor biosynthesis | 5 |
| Transport of Molybdenum | 3 |
| Auxin degradation | 1 |
| Oxidative stress | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
| ZZ gjo need homes | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Methane metabolism
- Phenylalanine metabolism
- Tryptophan metabolism
- Phenylpropanoid biosynthesis
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| betanidin degradation | 1 | 1 | 1 |
| superoxide radicals degradation | 2 | 2 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| baicalein degradation (hydrogen peroxide detoxification) | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| molybdopterin biosynthesis | 6 | 5 | 2 |
| molybdenum cofactor biosynthesis | 3 | 2 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| luteolin triglucuronide degradation | 4 | 1 | 1 |
| xanthommatin biosynthesis | 4 | 1 | 1 |
| sesamin biosynthesis | 8 | 1 | 1 |
| justicidin B biosynthesis | 10 | 1 | 1 |
| matairesinol biosynthesis | 10 | 1 | 1 |