Experiment set3IT051 for Methanococcus maripaludis JJ

Compare to:

formate McAA nicotinic acid dropout

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.9 11.7 hypothetical protein compare
MMJJ_RS07015 +0.9 1.4 PFL family protein compare
MMJJ_RS08130 +0.9 1.0 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS08830 +0.9 4.0 hypothetical protein compare
MMJJ_RS04005 +0.8 6.0 acetate--CoA ligase family protein compare
MMJJ_RS07935 +0.8 0.8 protein fwdD compare
MMJJ_RS07230 +0.7 4.5 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS05685 +0.6 4.3 class III signal peptide-containing protein compare
MMJJ_RS03835 +0.6 2.2 DUF504 domain-containing protein compare
MMJJ_RS07235 +0.6 4.6 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS04545 +0.6 2.0 PadR family transcriptional regulator compare
MMJJ_RS07220 +0.6 4.3 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS06640 +0.5 3.8 YfcE family phosphodiesterase compare
MMJJ_RS06275 +0.5 2.7 hypothetical protein compare
MMJJ_RS06085 +0.5 2.4 proteasome assembly chaperone family protein compare
MMJJ_RS07025 +0.5 2.2 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS07225 +0.5 3.7 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS07205 +0.5 3.1 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS07750 +0.5 1.6 class III signal peptide-containing protein compare
MMJJ_RS04955 +0.5 3.2 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS06680 +0.5 2.5 DUF366 family protein compare
MMJJ_RS06745 +0.5 3.1 energy-coupling factor ABC transporter permease compare
MMJJ_RS03725 +0.5 2.1 sulfurtransferase TusA family protein compare
MMJJ_RS06540 +0.5 1.3 DUF2120 domain-containing protein compare
MMJJ_RS06675 +0.5 3.8 TIGR01212 family radical SAM protein compare
MMJJ_RS07185 +0.5 1.2 DUF371 domain-containing protein compare
MMJJ_RS09295 +0.5 0.6 hypothetical protein compare
MMJJ_RS07240 +0.5 4.0 MBL fold metallo-hydrolase compare
MMJJ_RS07005 +0.5 2.1 transcription factor S compare
MMJJ_RS06460 +0.5 3.0 cytochrome c compare
MMJJ_RS07985 +0.5 1.8 hypothetical protein compare
MMJJ_RS06090 +0.4 2.6 hypothetical protein compare
MMJJ_RS08410 +0.4 1.7 CBS domain-containing protein compare
MMJJ_RS06950 +0.4 3.1 4-demethylwyosine synthase TYW1 compare
MMJJ_RS06440 +0.4 3.3 DUF4870 domain-containing protein compare
MMJJ_RS06735 +0.4 3.2 cobalt ECF transporter T component CbiQ compare
MMJJ_RS08305 +0.4 2.3 peroxiredoxin compare
MMJJ_RS07765 +0.4 2.0 DMT family protein compare
MMJJ_RS06515 +0.4 3.2 ribonuclease III compare
MMJJ_RS05975 +0.4 2.5 sulfurtransferase TusA family protein compare
MMJJ_RS04850 +0.4 2.4 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS06500 +0.4 2.6 class I SAM-dependent methyltransferase compare
MMJJ_RS06810 +0.4 2.9 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS04105 +0.4 3.1 prepilin peptidase compare
MMJJ_RS06740 +0.4 2.1 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS07920 +0.4 2.5 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS06120 +0.4 2.6 DUF4013 domain-containing protein compare
MMJJ_RS07915 +0.4 2.3 CBS domain-containing protein compare
MMJJ_RS06550 +0.4 2.7 ABC transporter permease compare
MMJJ_RS09360 +0.4 2.5 hypothetical protein compare
MMJJ_RS06580 +0.4 2.6 alanine dehydrogenase compare
MMJJ_RS06470 +0.4 2.6 tripartite tricarboxylate transporter permease compare
MMJJ_RS03350 +0.4 0.5 hypothetical protein compare
MMJJ_RS07210 +0.4 2.7 AmmeMemoRadiSam system protein B compare
MMJJ_RS08100 +0.4 2.1 hypothetical protein compare
MMJJ_RS03375 +0.3 2.1 hypothetical protein compare
MMJJ_RS04965 +0.3 0.8 RNA polymerase Rpb4 family protein compare
MMJJ_RS00500 +0.3 1.2 GNAT family N-acetyltransferase compare
MMJJ_RS08365 +0.3 2.1 DsrE family protein compare
MMJJ_RS07260 +0.3 2.5 PspC domain-containing protein compare
MMJJ_RS05530 +0.3 1.5 roadblock/LC7 domain-containing protein compare
MMJJ_RS07795 +0.3 1.8 cupin domain-containing protein compare
MMJJ_RS06210 +0.3 1.6 hypothetical protein compare
MMJJ_RS06710 +0.3 2.8 TldD/PmbA family protein compare
MMJJ_RS06685 +0.3 2.9 S-layer protein compare
MMJJ_RS08485 +0.3 1.6 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS03905 +0.3 1.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS06770 +0.3 2.7 hypothetical protein compare
MMJJ_RS06960 +0.3 2.9 CAP domain-containing protein compare
MMJJ_RS03250 +0.3 1.0 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS06280 +0.3 2.4 hypothetical protein compare
MMJJ_RS07820 +0.3 2.1 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS06080 +0.3 2.3 serine/threonine protein kinase compare
MMJJ_RS06290 +0.3 1.9 DUF749 domain-containing protein compare
MMJJ_RS04375 +0.3 0.9 hypothetical protein compare
MMJJ_RS06765 +0.3 2.4 hypothetical protein compare
MMJJ_RS08515 +0.3 1.3 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS07810 +0.3 2.1 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS02270 +0.3 1.4 HEPN domain-containing protein compare
MMJJ_RS06190 +0.3 2.2 7-cyano-7-deazaguanine synthase compare
MMJJ_RS04225 +0.3 2.1 aldo/keto reductase compare
MMJJ_RS06535 +0.3 2.3 UPF0104 family protein compare
MMJJ_RS04635 +0.3 1.9 DUF367 family protein compare
MMJJ_RS06520 +0.3 2.0 TldD/PmbA family protein compare
MMJJ_RS07215 +0.3 2.3 TIGR00341 family protein compare
MMJJ_RS07815 +0.3 2.0 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS07495 +0.3 1.5 4Fe-4S binding protein compare
MMJJ_RS03070 +0.3 1.3 MetS family NSS transporter small subunit compare
MMJJ_RS07480 +0.3 2.1 FAD-dependent oxidoreductase compare
MMJJ_RS09205 +0.3 1.0 hypothetical protein compare
MMJJ_RS05390 +0.3 2.0 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS02160 +0.3 1.7 amino acid ABC transporter permease compare
MMJJ_RS08685 +0.3 1.9 phosphate ABC transporter permease subunit PstC compare
MMJJ_RS00150 +0.3 1.5 DUF2180 family protein compare
MMJJ_RS07200 +0.3 2.0 MFS transporter compare
MMJJ_RS08225 +0.3 0.9 peptidylprolyl isomerase compare
MMJJ_RS07855 +0.3 1.9 YkgJ family cysteine cluster protein compare
MMJJ_RS07445 +0.3 1.8 RlmF-related methyltransferase compare
MMJJ_RS06495 +0.3 0.8 hypothetical protein compare
MMJJ_RS06590 +0.3 2.0 sodium:alanine symporter family protein compare
MMJJ_RS09065 +0.2 1.4 hypothetical protein compare
MMJJ_RS06800 +0.2 1.2 prefoldin subunit alpha compare
MMJJ_RS06385 +0.2 1.1 hypothetical protein compare
MMJJ_RS05410 +0.2 1.7 RecB-family nuclease compare
MMJJ_RS07800 +0.2 1.9 AMP-binding protein compare
MMJJ_RS06205 +0.2 1.7 EamA family transporter compare
MMJJ_RS08525 +0.2 1.0 peptidylprolyl isomerase compare
MMJJ_RS01790 +0.2 1.8 pyridoxamine 5'-phosphate oxidase family protein compare
MMJJ_RS07760 +0.2 1.4 GNAT family N-acetyltransferase compare
MMJJ_RS05355 +0.2 1.5 DUF2121 domain-containing protein compare
MMJJ_RS06505 +0.2 0.9 prephenate dehydratase compare
MMJJ_RS01210 +0.2 0.6 hypothetical protein compare
MMJJ_RS00785 +0.2 0.3 hypothetical protein compare
MMJJ_RS04345 +0.2 0.9 DUF2080 family transposase-associated protein compare
MMJJ_RS05705 +0.2 1.8 hypothetical protein compare
MMJJ_RS03575 +0.2 1.3 NUDIX hydrolase compare
MMJJ_RS08285 +0.2 1.7 class I SAM-dependent methyltransferase compare
MMJJ_RS07610 +0.2 1.3 DUF2119 domain-containing protein compare
MMJJ_RS06445 +0.2 2.0 hypothetical protein compare
MMJJ_RS06560 +0.2 1.7 site-2 protease family protein compare
MMJJ_RS07270 +0.2 1.4 ribonuclease HII compare
MMJJ_RS05690 +0.2 2.1 hypothetical protein compare
MMJJ_RS07450 +0.2 1.4 hypothetical protein compare
MMJJ_RS05500 +0.2 2.0 hypothetical protein compare
MMJJ_RS01825 +0.2 1.2 DNA repair and recombination protein RadB compare
MMJJ_RS05585 +0.2 1.7 hypothetical protein compare
MMJJ_RS05605 +0.2 1.1 hypothetical protein compare
MMJJ_RS07890 +0.2 1.2 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS02285 +0.2 0.8 class III signal peptide-containing protein compare
MMJJ_RS06105 +0.2 1.5 DUF99 family protein compare
MMJJ_RS05580 +0.2 1.4 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS05200 +0.2 1.7 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS05700 +0.2 1.4 metallophosphoesterase compare
MMJJ_RS03730 +0.2 0.9 SWIM zinc finger family protein compare
MMJJ_RS06790 +0.2 1.7 nucleotidyltransferase family protein compare
MMJJ_RS01430 +0.2 1.4 hypothetical protein compare
MMJJ_RS00145 +0.2 1.6 aquaporin family protein compare
MMJJ_RS06585 +0.2 1.3 alanine racemase compare
MMJJ_RS08350 +0.2 1.8 heavy metal translocating P-type ATPase compare
MMJJ_RS09020 +0.2 1.0 hypothetical protein compare
MMJJ_RS06430 +0.2 1.3 haloacid dehalogenase compare
MMJJ_RS04500 +0.2 1.4 hypothetical protein compare
MMJJ_RS03040 +0.2 1.4 lactate utilization protein compare
MMJJ_RS03220 +0.2 1.6 inosine/xanthosine triphosphatase compare
MMJJ_RS02355 +0.2 1.3 DUF2798 domain-containing protein compare
MMJJ_RS00875 +0.2 1.1 hydrogenase iron-sulfur subunit compare
MMJJ_RS06135 +0.2 1.5 50S ribosomal protein L11 methyltransferase compare
MMJJ_RS06555 +0.2 1.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS01670 +0.2 0.9 hypothetical protein compare
MMJJ_RS05990 +0.2 1.4 phosphatase PAP2 family protein compare
MMJJ_RS03445 +0.2 1.3 hypothetical protein compare
MMJJ_RS09300 +0.2 0.6 hypothetical protein compare
MMJJ_RS07740 +0.2 1.2 DUF2334 domain-containing protein compare
MMJJ_RS03290 +0.2 1.5 amidohydrolase compare
MMJJ_RS07365 +0.2 1.4 CatB-related O-acetyltransferase compare
MMJJ_RS01855 +0.2 1.4 MBL fold metallo-hydrolase compare
MMJJ_RS01275 +0.2 0.7 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07255 +0.2 1.5 hypothetical protein compare
MMJJ_RS06235 +0.2 1.5 IGHMBP2 family helicase compare
MMJJ_RS04215 +0.2 1.4 DMT family transporter compare
MMJJ_RS07745 +0.2 1.4 DUF5814 domain-containing protein compare
MMJJ_RS08580 +0.2 0.8 YkgJ family cysteine cluster protein compare
MMJJ_RS00890 +0.2 1.3 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS08045 +0.2 1.4 transporter substrate-binding domain-containing protein compare
MMJJ_RS08030 +0.2 1.3 hypothetical protein compare
MMJJ_RS05980 +0.2 1.1 DUF5400 domain-containing protein compare
MMJJ_RS06455 +0.2 1.2 YeeE/YedE family protein compare
MMJJ_RS07905 +0.2 1.1 DUF89 domain-containing protein compare
MMJJ_RS08310 +0.2 1.0 ZIP family metal transporter compare
MMJJ_RS01125 +0.2 0.7 hypothetical protein compare
MMJJ_RS07790 +0.2 1.3 hypothetical protein compare
MMJJ_RS07035 +0.2 0.2 glycosyl transferase compare
MMJJ_RS05660 +0.2 1.0 sulfopyruvate decarboxylase subunit beta compare
MMJJ_RS04420 +0.2 1.3 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family compare
MMJJ_RS06045 +0.2 1.1 hypothetical protein compare
MMJJ_RS05965 +0.2 1.4 MFS transporter compare
MMJJ_RS08370 +0.2 1.0 hypothetical protein compare
MMJJ_RS05405 +0.2 1.3 DNA cytosine methyltransferase compare
MMJJ_RS07280 +0.2 1.0 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS06285 +0.2 1.1 YchF/TatD family DNA exonuclease compare
MMJJ_RS01745 +0.2 0.9 metal-dependent transcriptional regulator compare
MMJJ_RS01010 +0.2 1.5 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS03450 +0.2 0.9 hypothetical protein compare
MMJJ_RS01970 +0.2 0.8 hypothetical protein compare
MMJJ_RS07835 +0.2 1.1 UPF0489 family protein compare
MMJJ_RS08195 +0.2 0.9 DUF4186 domain-containing protein compare
MMJJ_RS02880 +0.2 1.1 hypothetical protein compare
MMJJ_RS09120 +0.2 0.2 aspartate kinase compare
MMJJ_RS05235 +0.2 1.4 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS00405 +0.2 0.8 flavodoxin family protein compare
MMJJ_RS04825 +0.2 1.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MMJJ_RS04815 +0.2 0.8 TIM barrel protein compare
MMJJ_RS07590 +0.2 1.0 flap endonuclease-1 compare
MMJJ_RS04390 +0.2 1.2 rhomboid family intramembrane serine protease compare
MMJJ_RS06100 +0.2 1.0 rubrerythrin compare
MMJJ_RS09225 +0.2 1.0 hypothetical protein compare
MMJJ_RS01795 +0.2 0.9 TIGR00266 family protein compare
MMJJ_RS02165 +0.2 1.1 ABC transporter substrate-binding protein compare
MMJJ_RS01845 +0.1 1.0 acetolactate decarboxylase compare
MMJJ_RS00860 +0.1 1.0 4Fe-4S binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments