Experiment set3IT050 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -5.1 -5.0 phosphoglycerate dehydrogenase compare
PFLU_RS23115 -4.6 -15.2 dicarboxylate/amino acid:cation symporter compare
PFLU_RS01400 -4.4 -13.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28535 -4.2 -16.3 dihydroxy-acid dehydratase compare
PFLU_RS02490 -4.2 -13.1 phosphoserine phosphatase SerB compare
PFLU_RS12980 -3.9 -8.7 nitrite/sulfite reductase compare
PFLU_RS18505 -3.8 -9.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS12975 -3.6 -6.0 DUF934 domain-containing protein compare
PFLU_RS23065 -3.6 -11.5 phosphate acyltransferase PlsX compare
PFLU_RS28655 -3.5 -15.2 HAD family hydrolase compare
PFLU_RS24125 -3.4 -8.4 cold-shock protein compare
PFLU_RS23070 -3.4 -1.9 50S ribosomal protein L32 compare
PFLU_RS25640 -3.3 -13.5 ketol-acid reductoisomerase compare
PFLU_RS15410 -3.3 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS02790 -3.2 -2.3 TetR family transcriptional regulator compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS20580 -3.2 -15.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS29095 -3.2 -21.8 polyphosphate kinase 1 compare
PFLU_RS03770 -3.1 -13.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS00175 -3.1 -9.2 tryptophan synthase subunit alpha compare
PFLU_RS22740 -3.1 -6.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS25755 -3.1 -5.4 pantoate--beta-alanine ligase compare
PFLU_RS29515 -3.0 -12.9 RidA family protein compare
PFLU_RS00180 -2.9 -9.5 tryptophan synthase subunit beta compare
PFLU_RS01965 -2.7 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS03645 -2.7 -13.6 tetratricopeptide repeat protein compare
PFLU_RS04070 -2.7 -6.2 peptide chain release factor 3 compare
PFLU_RS22105 -2.7 -6.5 cysteine synthase CysM compare
PFLU_RS09720 -2.6 -2.8 single-stranded DNA-binding protein compare
PFLU_RS01995 -2.6 -15.4 malate dehydrogenase compare
PFLU_RS03765 -2.6 -10.5 sulfate adenylyltransferase subunit CysD compare
PFLU_RS22070 -2.6 -6.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS22595 -2.6 -5.0 OmpA family protein compare
PFLU_RS20515 -2.6 -3.5 amidophosphoribosyltransferase compare
PFLU_RS20575 -2.6 -5.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS18530 -2.5 -5.2 DNA translocase FtsK compare
PFLU_RS13540 -2.5 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS23310 -2.5 -10.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS20565 -2.4 -13.9 3-isopropylmalate dehydrogenase compare
PFLU_RS28965 -2.4 -10.1 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01895 -2.4 -6.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01605 -2.4 -8.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24765 -2.4 -15.9 2-isopropylmalate synthase compare
PFLU_RS01620 -2.4 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS08760 -2.4 -4.1 phosphonate C-P lyase system protein PhnG compare
PFLU_RS23305 -2.4 -11.4 arginine N-succinyltransferase compare
PFLU_RS25735 -2.4 -8.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS27370 -2.3 -11.0 anthranilate phosphoribosyltransferase compare
PFLU_RS08410 -2.3 -7.7 HTH-type transcriptional regulator CysB compare
PFLU_RS01645 -2.3 -12.7 S41 family peptidase compare
PFLU_RS20540 -2.3 -10.5 phosphoribosylanthranilate isomerase compare
PFLU_RS26400 -2.3 -4.2 HAD family hydrolase compare
PFLU_RS26595 -2.3 -1.5 lipoprotein compare
PFLU_RS01900 -2.2 -7.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27365 -2.2 -7.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS02215 -2.2 -3.1 hypothetical protein compare
PFLU_RS08735 -2.2 -2.0 histidine phosphatase family protein compare
PFLU_RS01625 -2.2 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01610 -2.2 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS18585 -2.2 -2.9 high frequency lysogenization protein HflD compare
PFLU_RS05630 -2.1 -2.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS30165 -2.1 -8.9 ParA family protein compare
PFLU_RS26545 -2.0 -8.3 sel1 repeat family protein compare
PFLU_RS04470 -2.0 -10.2 histidinol dehydrogenase compare
PFLU_RS07275 -2.0 -2.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04195 -2.0 -3.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS02590 -2.0 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS31425 -1.9 -1.6 hypothetical protein compare
PFLU_RS21495 -1.9 -3.7 TlpA family protein disulfide reductase compare
PFLU_RS24085 -1.9 -4.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS17950 -1.9 -2.4 hypothetical protein compare
PFLU_RS20690 -1.9 -4.1 hypothetical protein compare
PFLU_RS25645 -1.9 -1.3 acetolactate synthase small subunit compare
PFLU_RS22095 -1.9 -13.0 GTP diphosphokinase compare
PFLU_RS23920 -1.8 -2.7 septation protein A compare
PFLU_RS28315 -1.8 -1.3 response regulator compare
PFLU_RS24485 -1.8 -9.1 hypothetical protein compare
PFLU_RS14550 -1.8 -7.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS20510 -1.8 -10.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25750 -1.8 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS13350 -1.8 -2.2 ParD-like family protein compare
PFLU_RS14810 -1.8 -2.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS02980 -1.8 -2.3 precorrin-8X methylmutase compare
PFLU_RS03555 -1.7 -1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS30390 -1.7 -2.7 type III secretion system rspB compare
PFLU_RS08350 -1.7 -2.6 ABC transporter ATP-binding protein compare
PFLU_RS24095 -1.7 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS26905 -1.7 -7.8 transcriptional regulator NrdR compare
PFLU_RS04165 -1.7 -3.5 cell division protein ZapE compare
PFLU_RS04465 -1.7 -6.5 ATP phosphoribosyltransferase compare
PFLU_RS18670 -1.7 -2.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS05780 -1.7 -9.2 helix-turn-helix transcriptional regulator compare
PFLU_RS14545 -1.6 -3.1 hypothetical protein compare
PFLU_RS24025 -1.6 -7.5 quinolinate synthase NadA compare
PFLU_RS04660 -1.6 -4.7 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS20520 -1.6 -7.5 colicin V production protein CvpA compare
PFLU_RS22600 -1.6 -1.1 RNA polymerase sigma factor SigX compare
PFLU_RS28310 -1.6 -1.8 response regulator compare
PFLU_RS01320 -1.6 -7.7 phosphoenolpyruvate carboxykinase compare
PFLU_RS24205 -1.6 -1.5 DNA binding protein compare
PFLU_RS24090 -1.5 -3.3 Holliday junction branch migration protein RuvA compare
PFLU_RS18725 -1.5 -2.0 alpha/beta hydrolase compare
PFLU_RS17545 -1.5 -1.5 DUF465 domain-containing protein compare
PFLU_RS05210 -1.5 -2.1 HU family DNA-binding protein compare
PFLU_RS23390 -1.5 -1.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS08160 -1.5 -6.6 sugar transferase compare
PFLU_RS07665 -1.5 -1.0 type I DNA topoisomerase compare
PFLU_RS24160 -1.5 -5.0 HAMP domain-containing protein compare
PFLU_RS26640 -1.4 -8.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS04715 -1.4 -4.2 D-alanine--D-alanine ligase compare
PFLU_RS28165 -1.4 -7.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS12175 -1.4 -1.6 methyl-accepting chemotaxis protein compare
PFLU_RS25360 -1.4 -4.3 glutamate 5-kinase compare
PFLU_RS28650 -1.4 -5.6 RNA pyrophosphohydrolase compare
PFLU_RS03970 -1.4 -6.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS21985 -1.4 -3.7 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS01005 -1.3 -1.6 ABC transporter ATP-binding protein compare
PFLU_RS08675 -1.3 -0.9 DsbE family thiol:disulfide interchange protein compare
PFLU_RS05250 -1.3 -3.4 elongation factor 4 compare
PFLU_RS31755 -1.3 -1.5 hypothetical protein compare
PFLU_RS25740 -1.3 -4.9 polynucleotide adenylyltransferase PcnB compare
PFLU_RS01615 -1.3 -2.7 DUF2164 domain-containing protein compare
PFLU_RS25225 -1.3 -5.9 disulfide bond formation protein B compare
PFLU_RS00415 -1.2 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS21645 -1.2 -5.4 chemotaxis protein CheA compare
PFLU_RS08575 -1.2 -2.2 hypothetical protein compare
PFLU_RS23185 -1.2 -7.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS31830 -1.2 -0.9 hypothetical protein compare
PFLU_RS11380 -1.2 -0.8 sarcosine oxidase subunit delta compare
PFLU_RS01485 -1.2 -7.7 cellulase compare
PFLU_RS01315 -1.2 -2.1 Hsp33 family molecular chaperone HslO compare
PFLU_RS25585 -1.2 -1.7 exodeoxyribonuclease V subunit alpha compare
PFLU_RS30590 -1.2 -1.1 hypothetical protein compare
PFLU_RS29275 -1.2 -4.1 DUF484 family protein compare
PFLU_RS13300 -1.2 -2.7 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS22010 -1.1 -4.9 threonine-phosphate decarboxylase compare
PFLU_RS25920 -1.1 -2.7 outer membrane protein assembly factor BamE compare
PFLU_RS09980 -1.1 -8.3 peptidase S41 compare
PFLU_RS18655 -1.1 -2.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS20015 -1.1 -1.9 transporter compare
PFLU_RS12635 -1.1 -2.0 conjugal transfer protein TraR compare
PFLU_RS01585 -1.1 -4.2 oxidative damage protection protein compare
PFLU_RS04325 -1.1 -7.7 ribonuclease G compare
PFLU_RS11525 -1.1 -3.2 GntR family transcriptional regulator compare
PFLU_RS09575 -1.1 -2.9 FadR family transcriptional regulator compare
PFLU_RS20955 -1.1 -1.7 DUF1028 domain-containing protein compare
PFLU_RS02975 -1.1 -4.8 precorrin-3B synthase compare
PFLU_RS21110 -1.1 -2.6 AAA family ATPase compare
PFLU_RS18635 -1.1 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS04220 -1.1 -5.2 FadR family transcriptional regulator compare
PFLU_RS29900 -1.0 -6.0 DNA helicase II compare
PFLU_RS27380 -1.0 -6.1 anthranilate synthase component I compare
PFLU_RS22395 -1.0 -3.2 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS08505 -1.0 -4.3 protease HtpX compare
PFLU_RS25815 -1.0 -0.8 transcription termination/antitermination protein NusA compare
PFLU_RS08155 -1.0 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS01910 -1.0 -1.0 sterol-binding protein compare
PFLU_RS27375 -1.0 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS10430 -1.0 -1.5 peptidase compare
PFLU_RS01250 -1.0 -4.6 taurine ABC transporter permease TauC compare
PFLU_RS23730 -1.0 -6.6 MurR/RpiR family transcriptional regulator compare
PFLU_RS06855 -1.0 -1.5 helix-turn-helix transcriptional regulator compare
PFLU_RS16935 -1.0 -2.3 CoA ester lyase compare
PFLU_RS26770 -1.0 -6.3 DedA family protein compare
PFLU_RS08385 -1.0 -2.7 PilZ domain-containing protein compare
PFLU_RS28645 -1.0 -6.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01960 -1.0 -1.1 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS29250 -1.0 -1.6 DUF1289 domain-containing protein compare
PFLU_RS28385 -1.0 -5.2 homoserine O-acetyltransferase compare
PFLU_RS15610 -1.0 -3.3 helix-turn-helix transcriptional regulator compare
PFLU_RS05380 -1.0 -2.4 group 1 truncated hemoglobin compare
PFLU_RS10835 -1.0 -1.6 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS18675 -0.9 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS18620 -0.9 -3.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS27475 -0.9 -4.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS17160 -0.9 -2.5 hypothetical protein compare
PFLU_RS25955 -0.9 -1.2 hypothetical protein compare
PFLU_RS09315 -0.9 -2.5 hypothetical protein compare
PFLU_RS18640 -0.9 -2.6 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS26735 -0.9 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS00310 -0.9 -1.4 twin transmembrane helix small protein compare
PFLU_RS29485 -0.9 -3.1 DUF4870 domain-containing protein compare
PFLU_RS27620 -0.9 -7.1 acyl-CoA dehydrogenase compare
PFLU_RS04440 -0.9 -4.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS05885 -0.9 -3.5 recombinase RecA compare
PFLU_RS04780 -0.9 -1.7 hypothetical protein compare
PFLU_RS25730 -0.9 -6.6 PAS domain S-box protein compare
PFLU_RS02585 -0.9 -3.8 protease modulator HflC compare
PFLU_RS25865 -0.9 -1.6 YhbY family RNA-binding protein compare
PFLU_RS07650 -0.9 -6.1 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS09505 -0.9 -2.7 HU family DNA-binding protein compare
PFLU_RS01405 -0.9 -4.0 sensor histidine kinase compare
PFLU_RS11680 -0.9 -2.1 G/U mismatch-specific DNA glycosylase compare
PFLU_RS31310 -0.9 -1.8 phage tail protein compare
PFLU_RS29090 -0.9 -4.2 exopolyphosphatase compare
PFLU_RS17370 -0.9 -2.4 hypothetical protein compare
PFLU_RS22015 -0.9 -4.9 cobalamin biosynthesis protein compare
PFLU_RS06955 -0.9 -2.6 helix-turn-helix domain-containing protein compare
PFLU_RS04415 -0.9 -2.6 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS25595 -0.9 -1.1 exodeoxyribonuclease V subunit gamma compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms