Experiment set3IT049 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.24 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -5.6 -3.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2129 -5.2 -5.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5430 -4.4 -11.2 Transglycosylase, Slt family compare
Pf6N2E2_2753 -4.3 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_624 -4.3 -6.4 hypothetical protein PA3071 compare
Pf6N2E2_2605 -4.0 -6.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2967 -3.8 -3.6 Cold shock protein CspA compare
Pf6N2E2_625 -3.8 -5.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5252 -3.8 -3.0 FIG00956396: hypothetical protein compare
Pf6N2E2_3666 -3.7 -7.3 InaA protein compare
Pf6N2E2_5733 -3.5 -5.5 NLP/P60 family protein compare
Pf6N2E2_622 -3.4 -5.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_620 -3.3 -9.5 BatD compare
Pf6N2E2_4454 -3.3 -8.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3753 -3.2 -17.4 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4072 -3.2 -6.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4075 -3.1 -7.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4162 -3.0 -4.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_621 -3.0 -8.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3351 -2.9 -6.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_586 -2.9 -10.0 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_4352 -2.9 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_144 -2.8 -19.0 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4153 -2.7 -2.7 Sensory box histidine kinase compare
Pf6N2E2_2823 -2.7 -5.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3039 -2.7 -9.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2218 -2.7 -5.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4074 -2.7 -15.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3475 -2.6 -2.0 hypothetical protein compare
Pf6N2E2_4416 -2.6 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_3096 -2.5 -2.0 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3461 -2.5 -2.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2447 -2.5 -6.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4187 -2.5 -5.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_623 -2.5 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_3505 -2.4 -2.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4584 -2.4 -3.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4417 -2.4 -3.7 Protein of unknown function DUF484 compare
Pf6N2E2_4797 -2.4 -2.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2699 -2.3 -6.1 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_3261 -2.3 -3.7 hypothetical protein compare
Pf6N2E2_3060 -2.3 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_3373 -2.3 -3.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4414 -2.3 -4.9 FIG00953808: hypothetical protein compare
Pf6N2E2_4974 -2.2 -9.2 DedA protein compare
Pf6N2E2_75 -2.2 -4.1 Colicin V production protein compare
Pf6N2E2_3515 -2.2 -6.9 Probable transmembrane protein compare
Pf6N2E2_1056 -2.2 -3.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_145 -2.1 -7.0 putative exported protein compare
Pf6N2E2_4585 -2.1 -12.8 Cell division protein FtsX compare
Pf6N2E2_4611 -2.1 -6.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4369 -2.1 -3.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2578 -2.1 -3.7 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2940 -2.0 -6.5 OmpA family protein compare
Pf6N2E2_2824 -2.0 -10.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5345 -2.0 -7.0 LppC putative lipoprotein compare
Pf6N2E2_5338 -2.0 -9.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5331 -2.0 -8.0 ATPase, AFG1 family compare
Pf6N2E2_3062 -2.0 -6.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3876 -1.9 -5.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4169 -1.9 -6.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4351 -1.9 -10.9 Predicted signal transduction protein compare
Pf6N2E2_5337 -1.9 -4.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5727 -1.8 -7.0 FIG00955360: hypothetical protein compare
Pf6N2E2_5508 -1.8 -3.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4353 -1.8 -6.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2597 -1.8 -9.8 Flagellar regulatory protein FleQ compare
Pf6N2E2_4635 -1.8 -6.8 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_2825 -1.8 -3.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4359 -1.8 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2181 -1.8 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4273 -1.7 -7.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3841 -1.7 -6.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2278 -1.7 -13.1 Transcription-repair coupling factor compare
Pf6N2E2_3516 -1.7 -2.5 Probable transmembrane protein compare
Pf6N2E2_4205 -1.7 -6.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3839 -1.7 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3504 -1.7 -10.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_895 -1.7 -4.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_4204 -1.6 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_43 -1.6 -5.7 Histidine permease YuiF compare
Pf6N2E2_2384 -1.6 -5.1 CmpX compare
Pf6N2E2_5544 -1.6 -6.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4071 -1.6 -4.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5728 -1.6 -5.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5520 -1.6 -6.0 Sensory box histidine kinase compare
Pf6N2E2_5340 -1.6 -3.3 Stringent starvation protein A compare
Pf6N2E2_3625 -1.6 -9.7 Flagellar motor rotation protein MotA compare
Pf6N2E2_5771 -1.6 -5.4 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5704 -1.6 -4.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_822 -1.6 -5.9 TPR domain protein compare
Pf6N2E2_3517 -1.6 -5.0 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_1886 -1.5 -2.3 hypothetical protein compare
Pf6N2E2_2217 -1.5 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3624 -1.5 -5.4 Flagellar motor rotation protein MotB compare
Pf6N2E2_4843 -1.5 -5.4 FIG00956941: hypothetical protein compare
Pf6N2E2_5414 -1.5 -9.2 Nucleoid-associated protein compare
Pf6N2E2_3144 -1.5 -7.3 Thiol:disulfide interchange protein DsbC conserved
Pf6N2E2_2992 -1.4 -4.3 Regulatory protein RecX compare
Pf6N2E2_5406 -1.4 -3.6 FIG00958224: hypothetical protein compare
Pf6N2E2_2606 -1.4 -4.4 hypothetical protein compare
Pf6N2E2_70 -1.4 -4.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3842 -1.4 -3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2473 -1.4 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_5428 -1.4 -5.5 DNA recombination and repair protein RecO compare
Pf6N2E2_2274 -1.4 -4.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_288 -1.4 -2.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_156 -1.4 -2.6 Carbon storage regulator compare
Pf6N2E2_4888 -1.4 -11.1 Excinuclease ABC subunit A compare
Pf6N2E2_3930 -1.4 -9.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_5339 -1.4 -6.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_6038 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_4631 -1.4 -8.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5241 -1.4 -2.4 Aminopeptidase N compare
Pf6N2E2_440 -1.4 -2.7 FIG00954920: hypothetical protein compare
Pf6N2E2_3499 -1.3 -2.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_2318 -1.3 -5.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3480 -1.3 -1.7 Transcriptional regulator, ArsR family compare
Pf6N2E2_5758 -1.3 -2.0 FIG00957314: hypothetical protein compare
Pf6N2E2_4057 -1.3 -1.0 lipoprotein, putative compare
Pf6N2E2_5555 -1.3 -1.6 Cold shock protein CspA compare
Pf6N2E2_4197 -1.3 -6.9 DNA recombination and repair protein RecF compare
Pf6N2E2_2325 -1.3 -3.7 Recombination protein RecR compare
Pf6N2E2_1470 -1.2 -3.1 Transcriptional regulator, LysR family compare
Pf6N2E2_3514 -1.2 -2.0 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4618 -1.2 -4.2 Chemotaxis signal transduction protein compare
Pf6N2E2_4362 -1.2 -3.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2071 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_2750 -1.2 -4.8 Putative permease PerM (= YfgO) compare
Pf6N2E2_4759 -1.2 -8.9 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_634 -1.2 -6.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_3077 -1.2 -2.8 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_5534 -1.2 -3.2 FIG000859: hypothetical protein YebC compare
Pf6N2E2_1136 -1.2 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1140 -1.2 -3.5 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_5768 -1.2 -2.4 DNA recombination-dependent growth factor C compare
Pf6N2E2_5536 -1.2 -1.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2474 -1.2 -6.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1347 -1.1 -3.1 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_5757 -1.1 -3.6 hypothetical protein compare
Pf6N2E2_3761 -1.1 -9.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_4886 -1.1 -7.3 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2546 -1.1 -3.0 Carbon storage regulator compare
Pf6N2E2_4360 -1.1 -7.0 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_4077 -1.1 -1.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3586 -1.1 -5.2 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_5554 -1.1 -2.8 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4762 -1.1 -3.1 Biotin synthesis protein BioH compare
Pf6N2E2_4305 -1.1 -1.6 FIG00959590: hypothetical protein compare
Pf6N2E2_5006 -1.1 -6.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3040 -1.1 -3.7 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_5236 -1.1 -3.3 hypothetical protein compare
Pf6N2E2_5186 -1.1 -6.3 FIG00954491: hypothetical protein compare
Pf6N2E2_2746 -1.1 -4.1 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2580 -1.1 -3.3 Flagellar biosynthesis protein FliP compare
Pf6N2E2_4764 -1.1 -3.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5663 -1.0 -2.2 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_2582 -1.0 -2.2 Flagellar motor switch protein FliN compare
Pf6N2E2_5064 -1.0 -5.5 Xanthine/uracil/thiamine/ascorbate permease family protein compare
Pf6N2E2_2320 -1.0 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4120 -1.0 -7.4 Trk system potassium uptake protein TrkA compare
Pf6N2E2_362 -1.0 -3.8 Dipeptide transport system permease protein dppC compare
Pf6N2E2_2863 -1.0 -5.3 Gluconate permease compare
Pf6N2E2_5862 -1.0 -1.6 Lipoprotein, putative compare
Pf6N2E2_583 -1.0 -4.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_5689 -1.0 -2.5 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2938 -1.0 -4.1 Outer membrane lipoprotein compare
Pf6N2E2_3906 -1.0 -6.5 Transcription accessory protein (S1 RNA-binding domain) compare
Pf6N2E2_5691 -1.0 -5.3 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_6099 -1.0 -1.1 tRNA-Glu-TTC compare
Pf6N2E2_2640 -1.0 -1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5111 -1.0 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_84 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1499 -1.0 -1.9 ABC transporter amino acid-binding protein compare
Pf6N2E2_5972 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_5730 -1.0 -2.5 FIG00954480: hypothetical protein compare
Pf6N2E2_52 -1.0 -6.6 Excinuclease ABC subunit B compare
Pf6N2E2_2579 -1.0 -4.7 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_3656 -1.0 -3.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_5084 -1.0 -5.3 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_302 -1.0 -3.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_582 -1.0 -5.2 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_5761 -1.0 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5103 -1.0 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5184 -1.0 -6.0 Chromosome segregation ATPases compare
Pf6N2E2_3947 -1.0 -1.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_2128 -0.9 -2.8 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4517 -0.9 -3.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_689 -0.9 -1.9 FIG00956189: hypothetical protein compare
Pf6N2E2_155 -0.9 -1.8 Probable transmembrane protein compare
Pf6N2E2_5804 -0.9 -3.9 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Pf6N2E2_1606 -0.9 -3.5 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_4763 -0.9 -5.3 Biotin synthesis protein BioC compare
Pf6N2E2_5633 -0.9 -7.0 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3240 -0.9 -1.4 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3667 -0.9 -0.8 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5993 -0.9 -1.5 FIG00957412: hypothetical protein compare
Pf6N2E2_4821 -0.9 -3.5 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf6N2E2_5240 -0.9 -3.9 FIG00953775: hypothetical protein compare
Pf6N2E2_4640 -0.9 -1.4 hypothetical protein compare


Specific Phenotypes

For 23 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Vancomycin Hydrochloride Hydrate across organisms