Experiment set3IT049 for Pseudomonas fluorescens FW300-N2E2
LB with Vancomycin Hydrochloride Hydrate 0.24 mg/ml
Group: stressMedia: LB + Vancomycin Hydrochloride Hydrate (0.24 mg/ml)
Culturing: pseudo6_N2E2_ML5, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/9/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1184 A5,A6
Specific Phenotypes
For 23 genes in this experiment
For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens FW300-N2E2
For stress Vancomycin Hydrochloride Hydrate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Nucleotide sugars metabolism
- Porphyrin and chlorophyll metabolism
- Fatty acid biosynthesis
- Puromycin biosynthesis
- Glycine, serine and threonine metabolism
- Arginine and proline metabolism
- Tyrosine metabolism
- Benzoate degradation via hydroxylation
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Benzoxazinone biosynthesis
- Peptidoglycan biosynthesis
- alpha-Linolenic acid metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Trinitrotoluene degradation
- Butanoate metabolism
- Limonene and pinene degradation
- Diterpenoid biosynthesis
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 4 | 2 |
| peptidoglycan biosynthesis II (staphylococci) | 17 | 12 | 1 |
| peptidoglycan biosynthesis IV (Enterococcus faecium) | 17 | 12 | 1 |