Experiment set3IT048 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Vancomycin hydrochloride from Streptomyces orientalis 2e-04 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -6.4 -4.4 chromosomal replication initiator protein DnaA compare
BBR_RS14190 -5.9 -10.5 transcriptional regulator compare
BBR_RS10660 -5.3 -24.4 esterase compare
BBR_RS10285 -5.2 -3.6 membrane protein compare
BBR_RS10625 -4.7 -3.2 FHA domain-containing protein compare
BBR_RS15785 -4.7 -3.2 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS13070 -4.5 -2.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS11540 -4.2 -4.1 DUF1727 domain-containing protein compare
BBR_RS16425 -3.9 -2.7 DUF3071 domain-containing protein compare
BBR_RS15070 -3.9 -5.2 endolytic transglycosylase MltG compare
BBR_RS10580 -3.7 -4.7 septation inhibitor protein compare
BBR_RS10620 -3.5 -4.8 phosphoprotein phosphatase compare
BBR_RS12545 -3.4 -4.6 DUF4012 domain-containing protein compare
BBR_RS15695 -3.2 -7.2 membrane channel protein compare
BBR_RS11175 -3.2 -15.9 penicillin-binding protein compare
BBR_RS14610 -2.9 -4.7 DNA-binding response regulator compare
BBR_RS19815 -2.9 -19.4 ABC transporter permease compare
BBR_RS20460 -2.9 -4.8 chromosome partitioning protein ParB compare
BBR_RS19450 -2.8 -1.9 GTPase ObgE compare
BBR_RS13805 -2.8 -3.8 hypothetical protein compare
BBR_RS16625 -2.6 -6.7 DUF3710 domain-containing protein compare
BBR_RS11720 -2.6 -5.9 DUF2469 domain-containing protein compare
BBR_RS20465 -2.5 -7.6 chromosome partitioning protein compare
BBR_RS18645 -2.5 -11.4 DNA-binding response regulator compare
BBR_RS16490 -2.4 -6.0 polyprenyl synthase compare
BBR_RS12375 -2.4 -2.3 pantetheine-phosphate adenylyltransferase compare
BBR_RS15055 -2.4 -3.7 hypothetical protein compare
BBR_RS11315 -2.4 -14.0 MFS transporter compare
BBR_RS18735 -2.3 -8.6 hypothetical protein compare
BBR_RS15050 -2.3 -4.4 DUF948 domain-containing protein compare
BBR_RS18565 -2.3 -2.0 CHAP domain-containing protein compare
BBR_RS16950 -2.3 -2.4 hypothetical protein compare
BBR_RS16985 -2.3 -4.7 transcriptional repressor LexA compare
BBR_RS12310 -2.2 -1.8 signal recognition particle protein compare
BBR_RS18755 -2.2 -2.1 30S ribosome-binding factor RbfA compare
BBR_RS19820 -2.2 -15.8 ATP-binding protein of ABC transporter system compare
BBR_RS10940 -2.2 -12.0 DedA family protein compare
BBR_RS14540 -2.1 -3.2 Na+/H+ antiporter NhaA compare
BBR_RS17500 -2.1 -7.8 hypothetical protein compare
BBR_RS16750 -2.1 -2.8 ParA family protein compare
BBR_RS17640 -2.1 -2.4 DNA-directed RNA polymerase subunit omega compare
BBR_RS12045 -2.0 -4.5 hypothetical protein compare
BBR_RS13035 -2.0 -1.3 ABC transporter permease compare
BBR_RS16905 -1.9 -4.8 hypothetical protein compare
BBR_RS15860 -1.9 -1.3 DUF2316 domain-containing protein compare
BBR_RS10665 -1.9 -16.5 DUF2156 domain-containing protein compare
BBR_RS15080 -1.9 -3.3 chorismate synthase compare
BBR_RS14330 -1.9 -1.7 glycogen debranching enzyme GlgX compare
BBR_RS13030 -1.8 -1.3 cell division ATP-binding protein FtsE compare
BBR_RS14205 -1.8 -2.9 hypothetical protein compare
BBR_RS19125 -1.7 -4.9 hypothetical protein compare
BBR_RS19160 -1.7 -2.0 phosphate ABC transporter permease subunit PstC compare
BBR_RS19120 -1.7 -7.2 helicase compare
BBR_RS14265 -1.7 -3.8 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18215 -1.7 -5.9 AI-2E family transporter compare
BBR_RS18575 -1.7 -3.3 hypothetical protein compare
BBR_RS18180 -1.7 -7.9 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS17495 -1.6 -7.4 DUF58 domain-containing protein compare
BBR_RS19795 -1.6 -12.2 hypothetical protein compare
BBR_RS17505 -1.5 -8.3 VWA domain-containing protein compare
BBR_RS12235 -1.5 -1.5 hypothetical protein compare
BBR_RS16955 -1.5 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS21015 -1.5 -0.9 hypothetical protein compare
BBR_RS19465 -1.5 -2.0 ribonuclease E/G compare
BBR_RS16515 -1.5 -3.6 preprotein translocase subunit SecA compare
BBR_RS17510 -1.4 -7.1 VWA domain-containing protein compare
BBR_RS17490 -1.4 -8.2 MoxR family ATPase compare
BBR_RS21170 -1.4 -5.6 membrane protein insertion efficiency factor YidD compare
BBR_RS17515 -1.4 -5.8 hypothetical protein compare
BBR_RS18220 -1.4 -7.9 glycosyltransferase family 2 protein compare
BBR_RS16135 -1.4 -2.5 peptide deformylase compare
BBR_RS10900 -1.4 -1.3 molecular chaperone DnaK compare
BBR_RS18990 -1.3 -3.1 AbrB family transcriptional regulator compare
BBR_RS19540 -1.3 -1.3 homoserine dehydrogenase compare
BBR_RS14985 -1.3 -2.6 ATP-dependent DNA helicase PcrA compare
BBR_RS17440 -1.3 -1.0 DUF3027 domain-containing protein compare
BBR_RS16960 -1.3 -3.1 transcriptional regulator MraZ compare
BBR_RS13370 -1.2 -2.5 phosphoribosylamine--glycine ligase compare
BBR_RS10615 -1.2 -4.0 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS13040 -1.2 -0.8 CHAP domain-containing protein compare
BBR_RS15425 -1.2 -2.0 aspartate carbamoyltransferase compare
BBR_RS19800 -1.2 -9.0 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS15090 -1.2 -1.2 type II 3-dehydroquinate dehydratase compare
BBR_RS12295 -1.2 -1.4 RNA-binding protein compare
BBR_RS12860 -1.2 -7.7 DUF2183 domain-containing protein compare
BBR_RS16640 -1.2 -2.2 ABC transporter permease compare
BBR_RS18045 -1.1 -1.4 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS12940 -1.1 -6.9 hypothetical protein compare
BBR_RS19740 -1.1 -9.7 DUF2142 domain-containing protein compare
BBR_RS11970 -1.1 -2.2 Phage transcriptional regulator compare
BBR_RS15805 -1.1 -4.2 prolipoprotein diacylglyceryl transferase compare
BBR_RS11510 -1.1 -1.6 signal recognition particle-docking protein FtsY compare
BBR_RS15685 -1.1 -7.1 hypothetical protein compare
BBR_RS14230 -1.0 -3.2 HAMP domain-containing histidine kinase compare
BBR_RS15845 -1.0 -0.8 hypothetical protein compare
BBR_RS13720 -1.0 -5.4 hypothetical protein compare
BBR_RS13750 -1.0 -1.8 DivIVA domain-containing protein compare
BBR_RS14215 -1.0 -1.7 peptidase compare
BBR_RS12305 -1.0 -3.5 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS12470 -1.0 -7.9 long-chain fatty acid--CoA ligase compare
BBR_RS14080 -1.0 -1.3 hypothetical protein compare
BBR_RS19395 -1.0 -2.1 hypothetical protein compare
BBR_RS13635 -0.9 -4.7 carbamoyl-phosphate synthase large subunit compare
BBR_RS11240 -0.9 -2.9 GtrA family protein compare
BBR_RS20415 -0.9 -7.5 G5 domain-containing protein compare
BBR_RS19095 -0.9 -6.8 magnesium transporter compare
BBR_RS19190 -0.9 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS12040 -0.9 -5.9 peptidyl-prolyl cis-trans isomerase compare
BBR_RS20700 -0.9 -1.8 ribulose phosphate epimerase compare
BBR_RS13430 -0.9 -4.3 hypothetical protein compare
BBR_RS14475 -0.9 -5.5 formate C-acetyltransferase compare
BBR_RS14070 -0.9 -3.6 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS19945 -0.9 -5.0 MarR family transcriptional regulator compare
BBR_RS19755 -0.9 -5.4 glycosyl transferase compare
BBR_RS17290 -0.9 -4.5 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS13640 -0.8 -2.8 orotidine-5'-phosphate decarboxylase compare
BBR_RS20430 -0.8 -0.8 hypothetical protein compare
BBR_RS21000 -0.8 -2.3 hypothetical protein compare
BBR_RS15650 -0.8 -1.6 Holliday junction resolvase compare
BBR_RS13630 -0.8 -2.5 carbamoyl-phosphate synthase small subunit compare
BBR_RS18725 -0.8 -1.7 ribonuclease HI compare
BBR_RS20420 -0.8 -4.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS15660 -0.8 -3.1 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS15445 -0.8 -3.1 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS16170 -0.8 -1.7 hypothetical protein compare
BBR_RS19270 -0.8 -0.9 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS13215 -0.8 -1.5 hypothetical protein compare
BBR_RS11180 -0.8 -6.2 phosphatase PAP2 family protein compare
BBR_RS19260 -0.8 -6.0 hypothetical protein compare
BBR_RS12980 -0.8 -5.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15675 -0.8 -3.3 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS16220 -0.8 -0.9 DNA cytosine methyltransferase compare
BBR_RS20435 -0.8 -0.7 CCA tRNA nucleotidyltransferase compare
BBR_RS12820 -0.8 -5.3 hypothetical protein compare
BBR_RS18140 -0.8 -1.6 tRNA-Asp compare
BBR_RS15440 -0.8 -2.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS14210 -0.8 -0.5 hypothetical protein compare
BBR_RS18175 -0.8 -1.1 GTP cyclohydrolase I FolE compare
BBR_RS12785 -0.8 -1.7 transcriptional regulator compare
BBR_RS20690 -0.7 -1.1 hypothetical protein compare
BBR_RS13435 -0.7 -5.1 hypothetical protein compare
BBR_RS10265 -0.7 -4.4 DNA replication and repair protein RecF compare
BBR_RS12975 -0.7 -5.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS18745 -0.7 -1.0 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS20695 -0.7 -2.4 hypothetical protein compare
BBR_RS14130 -0.7 -0.5 septum formation initiator family protein compare
BBR_RS20685 -0.7 -3.2 hypothetical protein compare
BBR_RS15680 -0.7 -3.4 succinate--CoA ligase subunit alpha compare
BBR_RS15450 -0.7 -2.1 dihydroorotate dehydrogenase compare
BBR_RS13625 -0.7 -2.1 transcription antitermination factor NusB compare
BBR_RS12555 -0.7 -4.3 protein-tyrosine-phosphatase compare
BBR_RS13770 -0.7 -1.4 DNA repair protein RecO compare
BBR_RS11515 -0.7 -5.2 ammonium transporter compare
BBR_RS16040 -0.7 -2.5 hypothetical protein compare
BBR_RS11555 -0.6 -5.6 AarF/ABC1/UbiB kinase family protein compare
BBR_RS19645 -0.6 -3.3 RNA degradosome polyphosphate kinase compare
BBR_RS15130 -0.6 -2.2 metal-sulfur cluster assembly factor compare
BBR_RS14240 -0.6 -2.7 1,4-alpha-glucan branching protein GlgB compare
BBR_RS16140 -0.6 -4.4 long-chain fatty acid--CoA ligase compare
BBR_RS16965 -0.6 -0.4 ATP-dependent DNA helicase compare
BBR_RS15190 -0.6 -2.7 NAD(P) transhydrogenase subunit alpha compare
BBR_RS14605 -0.6 -4.9 ABC transporter permease compare
BBR_RS14600 -0.6 -3.4 ABC transporter ATP-binding protein compare
BBR_RS17460 -0.6 -3.5 TPM domain-containing protein compare
BBR_RS11550 -0.6 -4.6 hypothetical protein compare
BBR_RS14280 -0.6 -1.6 dephospho-CoA kinase compare
BBR_RS19170 -0.6 -4.8 DNA-binding response regulator compare
BBR_RS19435 -0.6 -1.2 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS14200 -0.6 -1.5 WhiB family transcriptional regulator compare
BBR_RS12810 -0.6 -3.8 hypothetical protein compare
BBR_RS13960 -0.6 -1.3 thiamine biosynthesis protein ThiS compare
BBR_RS10980 -0.6 -4.4 TetR/AcrR family transcriptional regulator compare
BBR_RS15085 -0.6 -0.7 3-dehydroquinate synthase compare
BBR_RS16275 -0.6 -1.0 leucine--tRNA ligase compare
BBR_RS15760 -0.6 -1.5 MerR family transcriptional regulator compare
BBR_RS19905 -0.6 -0.6 methionine--tRNA ligase compare
BBR_RS12900 -0.6 -1.3 DeoR/GlpR transcriptional regulator compare
BBR_RS16600 -0.6 -3.9 aconitate hydratase AcnA compare
BBR_RS16845 -0.5 -0.9 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS19515 -0.5 -4.6 ABC transporter ATP-binding protein compare
BBR_RS19155 -0.5 -2.9 phosphate ABC transporter, permease protein PstA compare
BBR_RS19535 -0.5 -4.3 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS15370 -0.5 -1.4 macro domain-containing protein compare
BBR_RS17455 -0.5 -3.4 DNA-binding response regulator compare
BBR_RS14260 -0.5 -0.9 ABC transporter ATP-binding protein compare
BBR_RS13445 -0.5 -3.5 phosphoribosylformylglycinamidine synthase compare
BBR_RS16245 -0.5 -1.3 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS19510 -0.5 -4.6 ABC transporter permease compare
BBR_RS14615 -0.5 -2.4 histidine kinase compare
BBR_RS20795 -0.5 -0.9 cystathionine gamma-lyase compare
BBR_RS11675 -0.5 -0.6 hypothetical protein compare
BBR_RS19100 -0.5 -4.0 N-acetyltransferase compare
BBR_RS14490 -0.5 -3.1 ribonuclease D compare
BBR_RS15435 -0.5 -1.6 dihydroorotase compare
BBR_RS12380 -0.5 -1.6 DUF3039 domain-containing protein compare
BBR_RS15935 -0.5 -2.3 hypothetical protein compare
BBR_RS15520 -0.5 -1.3 shikimate 5-dehydrogenase compare
BBR_RS10305 -0.5 -4.0 Conserved hypothetical membrane spanning protein, VanZ family compare
BBR_RS13490 -0.5 -0.8 30S ribosomal protein S7 compare
BBR_RS19655 -0.5 -3.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Vancomycin Hydrochloride from Streptomyces orientalis in Bifidobacterium breve UCC2003

For stress Vancomycin Hydrochloride from Streptomyces orientalis across organisms