Experiment set3IT047 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium Chloride 300 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_866 -3.9 -2.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1307 -3.6 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2005 -3.1 -3.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_339 -2.7 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_104 -2.6 -4.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_2105 -2.4 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2416 -2.2 -7.3 Choline dehydrogenase (EC 1.1.99.1) conserved
Pf1N1B4_3093 -2.1 -2.4 Outer membrane protein H precursor compare
Pf1N1B4_4004 -2.1 -3.0 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_3447 -1.9 -5.2 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_769 -1.9 -6.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2106 -1.9 -3.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3134 -1.9 -2.7 probable tail fiber assembly-like protein compare
Pf1N1B4_3074 -1.9 -2.1 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_2283 -1.8 -2.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1827 -1.7 -3.6 FIG00953482: hypothetical protein compare
Pf1N1B4_337 -1.7 -4.7 O-antigen export system permease protein RfbD compare
Pf1N1B4_327 -1.7 -2.1 hypothetical protein compare
Pf1N1B4_5533 -1.6 -3.1 cobS protein, putative compare
Pf1N1B4_4257 -1.6 -2.2 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2959 -1.6 -4.5 FIG067310: hypothetical protein compare
Pf1N1B4_1008 -1.6 -1.8 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_3812 -1.6 -7.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2427 -1.5 -2.4 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_1057 -1.5 -2.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1749 -1.5 -1.5 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2004 -1.5 -2.4 putative membrane protein compare
Pf1N1B4_4640 -1.5 -4.1 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_2039 -1.5 -2.2 hypothetical protein compare
Pf1N1B4_2534 -1.4 -2.7 DnaJ-like protein DjlA compare
Pf1N1B4_4818 -1.4 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1159 -1.4 -2.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_239 -1.4 -3.2 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_3143 -1.4 -2.8 RecA protein compare
Pf1N1B4_3396 -1.4 -2.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_890 -1.3 -2.4 DNA recombination and repair protein RecO compare
Pf1N1B4_2253 -1.3 -3.8 Transcriptional regulator, TetR family compare
Pf1N1B4_3906 -1.3 -3.5 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2912 -1.3 -2.2 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4777 -1.3 -2.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_3011 -1.3 -2.3 Tyrosine recombinase XerD compare
Pf1N1B4_1336 -1.3 -1.6 Putative multicopper oxidases compare
Pf1N1B4_26 -1.3 -5.2 Excinuclease ABC subunit B compare
Pf1N1B4_2075 -1.3 -2.8 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_4587 -1.3 -2.0 probable dioxygenase compare
Pf1N1B4_3325 -1.3 -1.8 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_507 -1.2 -1.6 FIG00956448: hypothetical protein compare
Pf1N1B4_2870 -1.2 -1.4 Regulator of competence-specific genes compare
Pf1N1B4_1133 -1.2 -4.2 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_3864 -1.2 -5.3 Recombination protein RecR compare
Pf1N1B4_4539 -1.2 -1.8 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf1N1B4_4612 -1.2 -2.1 FIG00954117: hypothetical protein compare
Pf1N1B4_1869 -1.2 -5.1 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_5690 -1.2 -3.0 Putative TEGT family carrier/transport protein compare
Pf1N1B4_2611 -1.2 -8.0 Excinuclease ABC subunit A compare
Pf1N1B4_2171 -1.2 -2.6 Tyrosine recombinase XerC compare
Pf1N1B4_2768 -1.2 -3.1 DNA repair protein RadA compare
Pf1N1B4_126 -1.2 -2.0 Pirin compare
Pf1N1B4_3811 -1.1 -2.6 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_4438 -1.1 -1.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_5576 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_1872 -1.1 -5.3 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_1276 -1.1 -2.5 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_2412 -1.1 -2.8 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_888 -1.1 -2.8 Transglycosylase, Slt family compare
Pf1N1B4_2707 -1.1 -2.9 Putative membrane protein compare
Pf1N1B4_4972 -1.1 -2.1 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_1 -1.1 -1.7 Colicin V production protein compare
Pf1N1B4_5814 -1.1 -2.4 putative membrane protein compare
Pf1N1B4_5137 -1.1 -4.4 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_3091 -1.0 -3.4 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4976 -1.0 -3.1 D-serine/D-alanine/glycine transporter compare
Pf1N1B4_2228 -1.0 -2.9 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_2621 -1.0 -1.6 PspA/IM30 family protein compare
Pf1N1B4_4299 -1.0 -2.4 sensor histidine kinase compare
Pf1N1B4_5725 -1.0 -1.5 High-affinity iron permease compare
Pf1N1B4_1067 -1.0 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_29 -1.0 -2.0 FIG00967200: hypothetical protein compare
Pf1N1B4_981 -1.0 -2.6 UPF0246 protein YaaA compare
Pf1N1B4_74 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_5136 -1.0 -4.7 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_1115 -1.0 -6.2 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4001 -1.0 -1.8 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_883 -1.0 -1.6 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_4632 -1.0 -2.4 Exonuclease SbcC compare
Pf1N1B4_336 -1.0 -7.3 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_2209 -1.0 -4.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_240 -1.0 -1.7 Transcriptional regulators compare
Pf1N1B4_4078 -1.0 -3.0 GDP-mannose pyrophosphatase YffH compare
Pf1N1B4_1927 -1.0 -5.0 DNA recombination and repair protein RecF compare
Pf1N1B4_5912 -1.0 -2.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4957 -1.0 -1.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1780 -1.0 -2.1 FIG00961586: hypothetical protein compare
Pf1N1B4_5699 -1.0 -1.3 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_606 -1.0 -1.7 Iron siderophore sensor protein compare
Pf1N1B4_5575 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_1870 -1.0 -1.8 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_5331 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_4716 -0.9 -2.0 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_5722 -0.9 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4729 -0.9 -1.6 Hemolysin-type calcium-binding region compare
Pf1N1B4_3494 -0.9 -2.0 Flavoprotein WrbA compare
Pf1N1B4_4839 -0.9 -1.8 lipoprotein compare
Pf1N1B4_5860 -0.9 -1.6 Two-component response regulator compare
Pf1N1B4_2873 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_3467 -0.9 -1.8 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_373 -0.9 -1.5 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_4946 -0.9 -2.4 putative aminotransferase compare
Pf1N1B4_4949 -0.9 -2.4 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_5957 -0.9 -1.7 Arsenical resistance operon repressor compare
Pf1N1B4_2334 -0.9 -2.1 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_5804 -0.9 -2.1 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_1235 -0.9 -3.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_1131 -0.9 -3.4 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_5797 -0.9 -1.8 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_2144 -0.9 -4.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_4563 -0.9 -1.5 Sulfate transporter compare
Pf1N1B4_960 -0.9 -5.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_4759 -0.9 -1.4 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_3072 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_2096 -0.9 -1.5 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_1236 -0.9 -3.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4601 -0.9 -1.9 Streptothricin acetyltransferase, Streptomyces lavendulae type compare
Pf1N1B4_5464 -0.9 -1.6 Cointegrate resolution protein T compare
Pf1N1B4_1593 -0.9 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3625 -0.9 -1.8 Flagellar synthesis regulator FleN compare
Pf1N1B4_5815 -0.9 -2.2 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_2484 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_5371 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_4477 -0.9 -1.8 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_3885 -0.9 -2.7 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_3273 -0.8 -1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_5666 -0.8 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1278 -0.8 -2.2 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily compare
Pf1N1B4_1565 -0.8 -2.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3858 -0.8 -2.6 FIG00954563: hypothetical protein compare
Pf1N1B4_201 -0.8 -1.2 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_1228 -0.8 -2.4 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Pf1N1B4_3350 -0.8 -1.5 FIG00954807: hypothetical protein compare
Pf1N1B4_1180 -0.8 -1.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2384 -0.8 -5.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3998 -0.8 -2.8 putative exported protein compare
Pf1N1B4_2939 -0.8 -3.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1544 -0.8 -4.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3260 -0.8 -1.8 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_4176 -0.8 -1.5 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_4225 -0.8 -1.8 transcriptional regulator, AraC family compare
Pf1N1B4_1234 -0.8 -2.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4636 -0.8 -1.4 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2993 -0.8 -2.7 hypothetical protein compare
Pf1N1B4_6004 -0.8 -2.8 tgtA5 cluster protein 1 compare
Pf1N1B4_3855 -0.8 -1.9 Chromosome partition protein smc compare
Pf1N1B4_4386 -0.8 -1.7 Inositol transport system sugar-binding protein compare
Pf1N1B4_4960 -0.8 -1.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1660 -0.8 -2.1 FIG00953324: hypothetical protein compare
Pf1N1B4_4446 -0.8 -0.9 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_4381 -0.8 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_4953 -0.8 -1.7 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_676 -0.8 -2.0 FIG00953991: hypothetical protein compare
Pf1N1B4_2943 -0.8 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1561 -0.8 -2.0 FIG00954300: hypothetical protein compare
Pf1N1B4_780 -0.8 -1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5834 -0.8 -1.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_1328 -0.8 -1.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2458 -0.8 -1.6 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_2003 -0.8 -2.5 FIG00956226: hypothetical protein compare
Pf1N1B4_1624 -0.8 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5518 -0.8 -3.0 General secretion pathway protein E compare
Pf1N1B4_124 -0.8 -1.6 Mechanosensitive ion channel compare
Pf1N1B4_563 -0.8 -2.1 RNA polymerase sigma-70 factor compare
Pf1N1B4_3899 -0.8 -2.2 COG0488: ATPase components of ABC transporters with duplicated ATPase domains compare
Pf1N1B4_4824 -0.8 -1.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_5460 -0.8 -1.9 TolA protein compare
Pf1N1B4_1689 -0.8 -3.7 High-affinity choline uptake protein BetT compare
Pf1N1B4_724 -0.8 -1.7 DNA-binding response regulator ColR compare
Pf1N1B4_1675 -0.7 -1.6 Transcriptional regulator compare
Pf1N1B4_5507 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_4035 -0.7 -1.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_5439 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_6045 -0.7 -0.8 CigR (Putative inner membrane protein) compare
Pf1N1B4_6031 -0.7 -1.8 Ribokinase (EC 2.7.1.15) (from data) compare
Pf1N1B4_259 -0.7 -1.4 Glutathione peroxidase family protein compare
Pf1N1B4_4038 -0.7 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5995 -0.7 -1.5 Transporter, MFS superfamily compare
Pf1N1B4_2208 -0.7 -3.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1661 -0.7 -2.5 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_1399 -0.7 -2.3 FIG003573: hypothetical protein compare
Pf1N1B4_4250 -0.7 -1.2 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_399 -0.7 -1.4 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_4350 -0.7 -2.4 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_3961 -0.7 -1.4 transcriptional regulator, MerR family compare
Pf1N1B4_4705 -0.7 -1.3 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf1N1B4_3939 -0.7 -1.5 FIG00953489: hypothetical protein compare
Pf1N1B4_2223 -0.7 -3.8 FIG006231: RNA-binding protein compare
Pf1N1B4_4765 -0.7 -1.5 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_1134 -0.7 -3.6 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
Pf1N1B4_2526 -0.7 -5.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1608 -0.7 -1.8 FIG00956533: hypothetical protein compare
Pf1N1B4_3869 -0.7 -5.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_335 -0.7 -4.8 Glycosyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N1B4

For stress Sodium Chloride across organisms