Experiment set3IT047 for Dyella japonica UNC79MFTsu3.2
LB with Thallium(I) acetate 0.008 mg/ml
Group: stressMedia: LB + Thallium(I) acetate (0.008 mg/ml)
Culturing: Dyella79_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 5.1 generations
By: Adam on 17-May-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1770 C5
Specific Phenotypes
For 6 genes in this experiment
For stress Thallium(I) acetate in Dyella japonica UNC79MFTsu3.2
For stress Thallium(I) acetate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glutaredoxins | 1 |
| Oxidative stress | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
| Thioredoxin-disulfide reductase | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- gamma-Hexachlorocyclohexane degradation
- Tryptophan metabolism
- Glutathione metabolism
- Toluene and xylene degradation
- Naphthalene and anthracene degradation
- 1,2-Dichloroethane degradation
- Methane metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| chlorinated phenols degradation | 4 | 4 | 4 |
| phenol degradation I (aerobic) | 1 | 1 | 1 |
| superoxide radicals degradation | 2 | 2 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| 2-chloroacrylate degradation I | 3 | 2 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |