Experiment set3IT046 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium Chloride 200 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2005 -3.1 -2.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_866 -2.8 -2.6 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1234 -2.5 -3.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1307 -2.3 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1 -2.1 -2.4 Colicin V production protein compare
Pf1N1B4_606 -2.1 -3.1 Iron siderophore sensor protein compare
Pf1N1B4_5618 -1.9 -4.0 Excinuclease ABC subunit C compare
Pf1N1B4_2465 -1.9 -2.5 Two-component response regulator CreB compare
Pf1N1B4_1565 -1.9 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3906 -1.9 -4.5 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_188 -1.8 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3443 -1.8 -2.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_4001 -1.8 -2.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1128 -1.7 -2.6 hypothetical protein compare
Pf1N1B4_4636 -1.7 -2.7 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2105 -1.7 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_412 -1.7 -2.4 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_2209 -1.7 -7.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3812 -1.7 -7.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_205 -1.6 -4.1 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf1N1B4_2106 -1.6 -2.7 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4640 -1.6 -4.6 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_5330 -1.6 -1.9 hypothetical protein compare
Pf1N1B4_2432 -1.6 -2.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_722 -1.5 -2.2 SAM-dependent methyltransferases compare
Pf1N1B4_2912 -1.5 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3833 -1.5 -6.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2416 -1.5 -5.8 Choline dehydrogenase (EC 1.1.99.1) conserved
Pf1N1B4_2959 -1.4 -4.3 FIG067310: hypothetical protein compare
Pf1N1B4_1261 -1.4 -3.2 FIG00953575: hypothetical protein compare
Pf1N1B4_1115 -1.4 -8.1 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_769 -1.4 -5.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4972 -1.4 -2.7 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_2807 -1.4 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_1827 -1.4 -3.3 FIG00953482: hypothetical protein compare
Pf1N1B4_6035 -1.3 -2.9 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_574 -1.3 -2.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_616 -1.3 -2.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2417 -1.3 -2.7 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_3836 -1.3 -1.7 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_1153 -1.3 -3.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1568 -1.2 -3.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_3168 -1.2 -2.7 AmpG permease compare
Pf1N1B4_3447 -1.2 -4.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_1691 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_644 -1.2 -2.0 Cold shock protein CspC compare
Pf1N1B4_5342 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_3966 -1.2 -2.4 serine/threonine protein kinase compare
Pf1N1B4_5393 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_3928 -1.2 -3.1 FIG00955661: hypothetical protein compare
Pf1N1B4_4123 -1.2 -1.9 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_4109 -1.2 -3.8 Cytochrome c2 compare
Pf1N1B4_1154 -1.2 -3.1 FIG00957702: hypothetical protein compare
Pf1N1B4_3793 -1.2 -2.2 COG2010: Cytochrome c, mono- and diheme variants compare
Pf1N1B4_2427 -1.2 -2.1 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_2147 -1.2 -3.0 Putrescine utilization regulator compare
Pf1N1B4_4990 -1.1 -1.5 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_2223 -1.1 -4.5 FIG006231: RNA-binding protein compare
Pf1N1B4_1936 -1.1 -4.2 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_110 -1.1 -3.3 Queuosine biosynthesis QueD, PTPS-I compare
Pf1N1B4_5531 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_1756 -1.1 -2.2 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_1835 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_3011 -1.1 -1.9 Tyrosine recombinase XerD compare
Pf1N1B4_4544 -1.1 -1.3 Uncharacterized protein ImpA compare
Pf1N1B4_4024 -1.1 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_6004 -1.1 -2.8 tgtA5 cluster protein 1 compare
Pf1N1B4_3272 -1.0 -2.6 hypothetical protein compare
Pf1N1B4_3802 -1.0 -1.9 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_2418 -1.0 -3.6 HTH-type transcriptional regulator BetI compare
Pf1N1B4_3466 -1.0 -1.4 FIG00955605: hypothetical protein compare
Pf1N1B4_615 -1.0 -1.9 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_2150 -1.0 -1.6 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_275 -1.0 -1.8 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_69 -1.0 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5533 -1.0 -2.0 cobS protein, putative compare
Pf1N1B4_5084 -1.0 -2.0 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_3143 -1.0 -1.9 RecA protein compare
Pf1N1B4_5295 -1.0 -3.0 hypothetical protein compare
Pf1N1B4_4219 -1.0 -1.8 FIG01074225: hypothetical protein compare
Pf1N1B4_2823 -1.0 -1.3 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_1055 -1.0 -2.4 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_1870 -1.0 -2.2 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2283 -1.0 -1.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2552 -1.0 -2.3 OsmC/Ohr family protein compare
Pf1N1B4_888 -1.0 -3.3 Transglycosylase, Slt family compare
Pf1N1B4_5112 -1.0 -2.2 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_359 -1.0 -1.7 GGDEF domain protein compare
Pf1N1B4_3396 -0.9 -1.9 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_327 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_1403 -0.9 -4.5 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_3965 -0.9 -1.2 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_2612 -0.9 -2.5 Putative transport protein compare
Pf1N1B4_1637 -0.9 -1.8 FIG00954739: hypothetical protein compare
Pf1N1B4_2736 -0.9 -1.8 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4671 -0.9 -2.1 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_808 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_962 -0.9 -5.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4403 -0.9 -1.6 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_5640 -0.9 -2.4 Transcriptional regulator, IclR family compare
Pf1N1B4_3785 -0.9 -1.2 FOG: Ankyrin repeat compare
Pf1N1B4_1865 -0.9 -2.9 Methionine ABC transporter permease protein compare
Pf1N1B4_4485 -0.9 -1.6 membrane protein, putative compare
Pf1N1B4_4758 -0.9 -2.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2082 -0.9 -2.4 Uncharacterized protein ImpA compare
Pf1N1B4_2366 -0.9 -2.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_1671 -0.9 -1.9 FIG00954962: hypothetical protein compare
Pf1N1B4_339 -0.9 -1.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_4632 -0.9 -1.5 Exonuclease SbcC compare
Pf1N1B4_4612 -0.9 -1.7 FIG00954117: hypothetical protein compare
Pf1N1B4_968 -0.9 -2.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_4040 -0.9 -2.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2792 -0.8 -2.3 FIG00953454: hypothetical protein compare
Pf1N1B4_3325 -0.8 -1.0 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4837 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_1927 -0.8 -4.4 DNA recombination and repair protein RecF compare
Pf1N1B4_3246 -0.8 -2.2 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_1191 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_419 -0.8 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_1228 -0.8 -2.2 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Pf1N1B4_3494 -0.8 -1.9 Flavoprotein WrbA compare
Pf1N1B4_3458 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3997 -0.8 -2.3 Uncharacterized protein YtfM precursor compare
Pf1N1B4_5095 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3871 -0.8 -6.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1408 -0.8 -2.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1971 -0.8 -2.1 SAM-dependent methyltransferases compare
Pf1N1B4_4802 -0.8 -1.8 polysaccharide deacetylase compare
Pf1N1B4_1878 -0.8 -4.7 Cytochrome c4 compare
Pf1N1B4_1430 -0.8 -1.2 Predicted signal transduction protein compare
Pf1N1B4_4695 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_46 -0.8 -1.8 Copper resistance protein C precursor compare
Pf1N1B4_4143 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_5059 -0.8 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_2688 -0.8 -2.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_886 -0.8 -1.4 FIG137478: Hypothetical protein compare
Pf1N1B4_846 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_1869 -0.8 -3.4 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_1872 -0.8 -3.8 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_240 -0.8 -1.4 Transcriptional regulators compare
Pf1N1B4_1310 -0.8 -2.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_620 -0.8 -1.6 Glycine cleavage system H protein compare
Pf1N1B4_4887 -0.8 -1.7 Pirin compare
Pf1N1B4_5023 -0.8 -1.7 Alkylated DNA repair protein AlkB compare
Pf1N1B4_2271 -0.8 -2.7 ATPases of the AAA+ class compare
Pf1N1B4_1300 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_456 -0.8 -2.0 FIG146278: Maf/YceF/YhdE family protein compare
Pf1N1B4_4386 -0.8 -1.7 Inositol transport system sugar-binding protein compare
Pf1N1B4_5892 -0.8 -2.1 FIG00961753: hypothetical protein compare
Pf1N1B4_5997 -0.8 -1.7 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_652 -0.8 -4.7 Sensory box histidine kinase compare
Pf1N1B4_3687 -0.7 -2.0 FIG00953885: hypothetical protein compare
Pf1N1B4_668 -0.7 -3.2 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf1N1B4_2004 -0.7 -1.2 putative membrane protein compare
Pf1N1B4_1116 -0.7 -4.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_4039 -0.7 -3.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1569 -0.7 -5.2 Twin-arginine translocation protein TatC compare
Pf1N1B4_890 -0.7 -1.6 DNA recombination and repair protein RecO compare
Pf1N1B4_3334 -0.7 -2.2 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_3559 -0.7 -5.3 Aromatic amino acid transport protein AroP compare
Pf1N1B4_4826 -0.7 -1.4 glutamine synthetase family protein compare
Pf1N1B4_3972 -0.7 -2.4 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_5018 -0.7 -1.7 FIG00962345: hypothetical protein compare
Pf1N1B4_4030 -0.7 -1.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_5827 -0.7 -2.0 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_2750 -0.7 -1.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1730 -0.7 -1.3 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_627 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_649 -0.7 -2.1 Small-conductance mechanosensitive channel compare
Pf1N1B4_4027 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_26 -0.7 -3.5 Excinuclease ABC subunit B compare
Pf1N1B4_5830 -0.7 -1.7 FIG023677: hypothetical protein compare
Pf1N1B4_4154 -0.7 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_1315 -0.7 -3.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3855 -0.7 -2.0 Chromosome partition protein smc compare
Pf1N1B4_4833 -0.7 -1.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2925 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1155 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_3038 -0.7 -3.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4777 -0.7 -1.6 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_3864 -0.7 -2.5 Recombination protein RecR compare
Pf1N1B4_1295 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_4509 -0.7 -1.7 Aldose 1-epimerase compare
Pf1N1B4_554 -0.7 -2.1 Putative threonine efflux protein compare
Pf1N1B4_5385 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_835 -0.7 -1.6 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_5897 -0.7 -2.2 FIG00963512: hypothetical protein compare
Pf1N1B4_3468 -0.7 -1.3 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_304 -0.7 -1.0 Deoxyribonuclease TatD compare
Pf1N1B4_3350 -0.7 -1.3 FIG00954807: hypothetical protein compare
Pf1N1B4_1159 -0.7 -1.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_3869 -0.7 -5.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_2372 -0.7 -2.2 Transcriptional regulator, LysR family compare
Pf1N1B4_1630 -0.7 -1.8 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
Pf1N1B4_168 -0.7 -3.3 Arylsulfatase regulator (Fe-S oxidoreductase) compare
Pf1N1B4_2080 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_490 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_2651 -0.7 -2.4 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_960 -0.7 -4.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3870 -0.7 -5.5 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N1B4

For stress Sodium Chloride across organisms