Experiment set3IT046 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.0 -4.1 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.9 -4.1 S41 family peptidase compare
PFLU_RS23920 -5.6 -3.9 septation protein A compare
PFLU_RS07650 -5.2 -6.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS27620 -5.2 -14.4 acyl-CoA dehydrogenase compare
PFLU_RS28695 -5.1 -3.5 phosphoglycerate dehydrogenase compare
PFLU_RS14550 -5.0 -3.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS27685 -5.0 -9.6 malate synthase G compare
PFLU_RS27365 -5.0 -5.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS06320 -4.9 -3.4 OmpH family outer membrane protein compare
PFLU_RS29095 -4.8 -28.8 polyphosphate kinase 1 compare
PFLU_RS27370 -4.7 -7.2 anthranilate phosphoribosyltransferase compare
PFLU_RS20580 -4.7 -8.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28535 -4.6 -9.9 dihydroxy-acid dehydratase compare
PFLU_RS07655 -4.6 -4.5 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS02490 -4.6 -8.7 phosphoserine phosphatase SerB compare
PFLU_RS23355 -4.5 -26.0 acetate--CoA ligase compare
PFLU_RS22095 -4.5 -16.0 GTP diphosphokinase compare
PFLU_RS25750 -4.4 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS20540 -4.4 -7.4 phosphoribosylanthranilate isomerase compare
PFLU_RS02365 -4.3 -12.8 glycosyltransferase compare
PFLU_RS00180 -4.3 -4.2 tryptophan synthase subunit beta compare
PFLU_RS03770 -4.3 -12.4 sulfate adenylyltransferase subunit CysN compare
PFLU_RS20575 -4.3 -5.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27440 -4.3 -5.9 nucleotidyltransferase family protein compare
PFLU_RS21935 -4.3 -9.1 sensor histidine kinase compare
PFLU_RS18610 -4.3 -11.3 isocitrate lyase compare
PFLU_RS20565 -4.2 -10.9 3-isopropylmalate dehydrogenase compare
PFLU_RS28645 -4.2 -19.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS03970 -4.2 -10.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25640 -4.2 -8.5 ketol-acid reductoisomerase compare
PFLU_RS26545 -4.2 -13.1 sel1 repeat family protein compare
PFLU_RS19550 -4.2 -1.4 ABC transporter ATP-binding protein compare
PFLU_RS23680 -4.1 -19.9 long-chain fatty acid--CoA ligase compare
PFLU_RS25225 -4.1 -12.0 disulfide bond formation protein B compare
PFLU_RS01320 -4.0 -3.9 phosphoenolpyruvate carboxykinase compare
PFLU_RS01605 -4.0 -9.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29065 -4.0 -1.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04385 -4.0 -13.2 RNase adapter RapZ compare
PFLU_RS24765 -3.9 -19.6 2-isopropylmalate synthase compare
PFLU_RS28655 -3.9 -12.1 HAD family hydrolase compare
PFLU_RS04470 -3.9 -9.5 histidinol dehydrogenase compare
PFLU_RS25920 -3.9 -3.1 outer membrane protein assembly factor BamE compare
PFLU_RS25360 -3.9 -6.5 glutamate 5-kinase compare
PFLU_RS24485 -3.9 -14.0 hypothetical protein compare
PFLU_RS14810 -3.9 -2.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS12980 -3.9 -7.0 nitrite/sulfite reductase compare
PFLU_RS01620 -3.8 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28390 -3.8 -11.7 methionine biosynthesis protein MetW compare
PFLU_RS04465 -3.8 -9.7 ATP phosphoribosyltransferase compare
PFLU_RS24125 -3.8 -5.2 cold-shock protein compare
PFLU_RS01610 -3.8 -12.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS21060 -3.8 -5.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS12975 -3.8 -5.1 DUF934 domain-containing protein compare
PFLU_RS26770 -3.8 -15.2 DedA family protein compare
PFLU_RS22740 -3.7 -2.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS01910 -3.7 -2.5 sterol-binding protein compare
PFLU_RS05910 -3.7 -2.4 response regulator transcription factor compare
PFLU_RS20510 -3.7 -12.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25715 -3.7 -7.4 RNA polymerase-binding protein DksA compare
PFLU_RS09220 -3.7 -10.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS26020 -3.6 -13.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS03765 -3.6 -10.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24785 -3.6 -12.1 outer membrane protein assembly factor BamB compare
PFLU_RS21965 -3.6 -15.4 transporter compare
PFLU_RS01900 -3.6 -8.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25735 -3.6 -4.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS18505 -3.5 -8.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS08505 -3.5 -7.1 protease HtpX compare
PFLU_RS26735 -3.5 -12.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS31590 -3.5 -2.3 hypothetical protein compare
PFLU_RS01895 -3.5 -7.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25755 -3.5 -2.4 pantoate--beta-alanine ligase compare
PFLU_RS28725 -3.5 -14.8 DUF2059 domain-containing protein compare
PFLU_RS01625 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00175 -3.4 -8.5 tryptophan synthase subunit alpha compare
PFLU_RS26640 -3.4 -7.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS28650 -3.3 -9.1 RNA pyrophosphohydrolase compare
PFLU_RS28165 -3.3 -12.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS21215 -3.3 -1.5 YheU family protein compare
PFLU_RS28385 -3.3 -14.4 homoserine O-acetyltransferase compare
PFLU_RS09980 -3.3 -18.8 peptidase S41 compare
PFLU_RS27445 -3.3 -16.4 phosphotransferase compare
PFLU_RS23310 -3.3 -8.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS22595 -3.3 -3.2 OmpA family protein compare
PFLU_RS22105 -3.3 -5.8 cysteine synthase CysM compare
PFLU_RS10430 -3.2 -2.2 peptidase compare
PFLU_RS04440 -3.2 -7.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS02590 -3.2 -9.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS08065 -3.2 -10.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS17950 -3.2 -2.5 hypothetical protein compare
PFLU_RS24025 -3.2 -11.0 quinolinate synthase NadA compare
PFLU_RS04430 -3.2 -6.4 ATP-binding cassette domain-containing protein compare
PFLU_RS20290 -3.1 -1.7 integration host factor subunit alpha compare
PFLU_RS29880 -3.1 -14.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS18410 -3.1 -5.0 response regulator compare
PFLU_RS08155 -3.1 -2.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS04435 -3.1 -6.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS07785 -3.1 -9.5 VacJ family lipoprotein compare
PFLU_RS04445 -3.0 -6.7 ABC transporter substrate-binding protein compare
PFLU_RS15410 -3.0 -2.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS09055 -3.0 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS04565 -2.9 -1.4 TMEM165/GDT1 family protein compare
PFLU_RS21495 -2.9 -2.0 TlpA family protein disulfide reductase compare
PFLU_RS02370 -2.9 -8.4 glycosyltransferase compare
PFLU_RS00540 -2.9 -19.7 acetyl-CoA hydrolase/transferase family protein conserved
PFLU_RS07640 -2.9 -10.8 universal stress protein compare
PFLU_RS28690 -2.9 -14.9 FAD-binding oxidoreductase compare
PFLU_RS29875 -2.9 -14.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS28965 -2.9 -11.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27305 -2.8 -6.7 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS29735 -2.8 -12.3 HlyC/CorC family transporter compare
PFLU_RS04070 -2.8 -5.9 peptide chain release factor 3 compare
PFLU_RS20625 -2.8 -2.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS25730 -2.8 -17.3 PAS domain S-box protein compare
PFLU_RS04315 -2.8 -4.3 rod shape-determining protein MreD compare
PFLU_RS18645 -2.7 -1.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS23305 -2.7 -11.2 arginine N-succinyltransferase compare
PFLU_RS29885 -2.7 -8.8 LysR family transcriptional regulator compare
PFLU_RS24475 -2.7 -17.9 AmpG family muropeptide MFS transporter compare
PFLU_RS04150 -2.6 -5.6 DUF1043 family protein compare
PFLU_RS18615 -2.6 -1.8 NADH-quinone oxidoreductase subunit A compare
PFLU_RS03980 -2.6 -8.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS19165 -2.6 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS01965 -2.6 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS19175 -2.6 -9.7 trigger factor compare
PFLU_RS18625 -2.6 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS25760 -2.5 -12.7 glucose-6-phosphate isomerase compare
PFLU_RS02460 -2.5 -11.3 alpha/beta fold hydrolase compare
PFLU_RS04650 -2.5 -14.1 ABC transporter substrate-binding protein compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS05210 -2.5 -2.9 HU family DNA-binding protein compare
PFLU_RS01005 -2.5 -1.3 ABC transporter ATP-binding protein compare
PFLU_RS29760 -2.5 -8.9 phosphate ABC transporter permease PstA compare
PFLU_RS01615 -2.5 -5.9 DUF2164 domain-containing protein compare
PFLU_RS06555 -2.4 -11.2 OmpA family protein compare
PFLU_RS06130 -2.4 -8.9 phosphoenolpyruvate carboxylase compare
PFLU_RS11380 -2.4 -1.8 sarcosine oxidase subunit delta compare
PFLU_RS22630 -2.4 -13.0 phosphoenolpyruvate synthase compare
PFLU_RS07695 -2.4 -3.1 beta-N-acetylhexosaminidase compare
PFLU_RS18620 -2.4 -1.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS22645 -2.4 -12.0 EamA family transporter compare
PFLU_RS07970 -2.4 -11.3 LOG family protein compare
PFLU_RS01485 -2.4 -13.2 cellulase compare
PFLU_RS03665 -2.4 -6.0 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS07255 -2.4 -4.6 sulfurtransferase TusA family protein compare
PFLU_RS25740 -2.3 -4.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS04415 -2.3 -3.8 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS18635 -2.3 -1.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS13540 -2.3 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18640 -2.3 -2.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02000 -2.3 -16.5 penicillin-binding protein 1A compare
PFLU_RS20515 -2.2 -3.4 amidophosphoribosyltransferase compare
PFLU_RS26905 -2.2 -8.3 transcriptional regulator NrdR compare
PFLU_RS18700 -2.2 -2.5 hypothetical protein compare
PFLU_RS18670 -2.2 -1.5 NADH-quinone oxidoreductase subunit M compare
PFLU_RS15610 -2.2 -6.0 helix-turn-helix transcriptional regulator compare
PFLU_RS20660 -2.2 -8.9 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS21300 -2.2 -4.9 cysteine hydrolase compare
PFLU_RS27475 -2.2 -3.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS07725 -2.2 -3.8 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS10765 -2.1 -7.0 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS23730 -2.1 -12.3 MurR/RpiR family transcriptional regulator compare
PFLU_RS26595 -2.1 -1.4 lipoprotein compare
PFLU_RS22835 -2.1 -8.5 amidotransferase compare
PFLU_RS18655 -2.1 -2.0 NADH-quinone oxidoreductase subunit J compare
PFLU_RS28325 -2.1 -8.4 energy transducer TonB compare
PFLU_RS10835 -2.0 -1.6 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS05885 -2.0 -4.4 recombinase RecA compare
PFLU_RS25670 -2.0 -10.1 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS01960 -2.0 -1.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS18665 -2.0 -2.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29990 -2.0 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS10595 -2.0 -4.0 hypothetical protein compare
PFLU_RS27465 -2.0 -3.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS24085 -1.9 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS26250 -1.9 -10.7 ferredoxin--NADP reductase compare
PFLU_RS14830 -1.9 -6.1 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS24710 -1.9 -6.4 alpha,alpha-phosphotrehalase compare
PFLU_RS05595 -1.9 -8.1 alpha/beta fold hydrolase compare
PFLU_RS02280 -1.9 -10.7 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS01995 -1.8 -11.5 malate dehydrogenase compare
PFLU_RS23070 -1.8 -1.3 50S ribosomal protein L32 compare
PFLU_RS24090 -1.8 -3.1 Holliday junction branch migration protein RuvA compare
PFLU_RS01650 -1.8 -6.4 murein hydrolase activator EnvC compare
PFLU_RS13050 -1.8 -5.2 VWA domain-containing protein compare
PFLU_RS31675 -1.8 -1.4 hypothetical protein compare
PFLU_RS25800 -1.7 -4.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS19170 -1.7 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS29555 -1.7 -7.9 HDOD domain-containing protein compare
PFLU_RS08370 -1.7 -3.0 hypothetical protein compare
PFLU_RS08410 -1.7 -6.3 HTH-type transcriptional regulator CysB compare
PFLU_RS14820 -1.7 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS20285 -1.7 -5.9 MerR family transcriptional regulator compare
PFLU_RS24000 -1.7 -11.1 aminomethyl-transferring glycine dehydrogenase compare
PFLU_RS02790 -1.7 -1.5 TetR family transcriptional regulator compare
PFLU_RS22895 -1.7 -11.6 PLP-dependent aminotransferase family protein compare
PFLU_RS05585 -1.7 -5.3 MtnX-like HAD-IB family phosphatase compare
PFLU_RS04325 -1.6 -10.6 ribonuclease G compare
PFLU_RS04945 -1.6 -3.0 molybdopterin synthase catalytic subunit MoaE compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Sodium acetate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium acetate across organisms