Experiment set3IT045 for Sinorhizobium meliloti 1021

Compare to:

LB with Sodium nitrate 40 mM

200 most important genes:

  gene name fitness t score description  
SMc02753 -4.7 -1.6 PTS system transporter subunit IIA compare
SMc00492 -4.2 -1.0 hypothetical protein compare
SMa1924 -4.1 -1.0 hypothetical protein compare
SMc03849 -3.7 -1.5 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02140 -3.7 -1.8 phosphate regulon transcriptional regulatory protein compare
SMc01280 -3.5 -2.4 protease compare
SMc01147 -3.3 -4.9 coproporphyrinogen III oxidase compare
SMc03967 -3.3 -1.4 Holliday junction resolvase compare
SMc00726 -3.3 -1.1 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc02363 -3.1 -4.2 cytochrome C-type biogenesis transmembrane protein compare
SMa0450 -3.1 -2.2 hypothetical protein compare
SMc04296 -2.9 -1.0 cell division protein FtsZ compare
SMa1570 -2.8 -2.0 PilA2 pilus assembly protein compare
SMc00619 -2.8 -2.2 hypothetical protein compare
SMc00914 -2.8 -3.2 oxidoreductase compare
SMc04330 -2.7 -2.9 trimethylamine methyltransferase compare
SMc03763 -2.7 -3.5 cytosine-specific methyltransferase compare
SMc01880 -2.6 -3.4 pantoate--beta-alanine ligase compare
SMc02232 -2.6 -2.8 hypothetical protein compare
SMc02147 -2.6 -7.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SM_b21633 -2.6 -1.0 enoyl-CoA hydratase compare
SMa1639 -2.5 -0.8 hypothetical protein compare
SMa0789 -2.5 -4.4 GntR family transcriptional regulator compare
SMc02149 -2.5 -2.1 hypothetical protein compare
SMa0095 -2.5 -1.9 D-aminopeptidase compare
SMc02850 -2.4 -2.4 DNA polymerase I compare
SMc02856 -2.3 -8.3 penicillin-binding protein compare
SMc02084 -2.3 -0.9 biopolymer transport transmembrane protein compare
SMc00963 -2.2 -3.9 hypothetical protein compare
SMc01881 -2.2 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02144 -2.2 -4.9 phosphate ABC transporter permease compare
SMc01419 -2.2 -1.7 RNA polymerase sigma factor protein compare
SMc00073 -2.1 -2.1 hypothetical protein compare
SMc02697 -2.1 -1.6 hypothetical protein compare
SMc00451 -2.1 -5.2 processing protease compare
SMc02142 -2.0 -5.5 phosphate transporter ATP-binding protein compare
SMc02505 -1.9 -1.5 hypothetical protein compare
SMc01337 -1.9 -1.3 hypothetical protein compare
SMa0846 -1.8 -1.4 transposase, fragment compare
SMa1365 -1.8 -1.3 ATP-binding protein compare
SMc01579 -1.8 -1.0 hypothetical protein compare
SMc03100 -1.8 -0.8 hypothetical protein compare
SMc02909 -1.8 -1.8 transglycosylase transmembrane protein compare
SMc03184 -1.8 -0.7 PH adaptation potassium efflux system G transmembrane protein compare
SMc02868 -1.8 -3.3 multidrug efflux system protein compare
SMc02145 -1.7 -1.0 signal peptide protein compare
SMc04085 -1.7 -3.7 hypothetical protein compare
SMa1635 -1.7 -1.5 hypothetical protein compare
SMc00461 -1.7 -1.4 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMa1095 -1.7 -0.7 hypothetical protein compare
SMc02114 -1.7 -3.4 hypothetical protein compare
SMc00588 -1.7 -1.8 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
SMc01315 -1.7 -1.3 hypothetical protein compare
SMc03862 -1.6 -3.0 hypothetical protein compare
SMa1323 -1.6 -1.6 Transcription regulator compare
SMc00970 -1.6 -2.7 exodeoxyribonuclease VII small subunit compare
SMc02260 -1.6 -1.5 ABC transporter ATP-binding protein compare
SMc02861 -1.6 -1.7 phosphate transporter compare
SMc02510 -1.6 -0.7 ferric uptake regulation protein compare
SMc00580 -1.6 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
SM_b20323 -1.6 -1.1 transcriptional regulator compare
SMc00296 -1.6 -5.6 POLY3-hydroxybutyrate polymerase compare
SMc04462 -1.6 -2.8 glycerate dehydrogenase compare
SMc02102 -1.5 -2.6 hypothetical protein compare
SMc03837 -1.5 -2.6 ABC transporter ATP-binding protein compare
SMc00378 -1.5 -2.4 exodeoxyribonuclease VII large subunit compare
SMc00295 -1.5 -1.3 hypothetical protein compare
SMc01568 -1.5 -1.3 hypothetical protein compare
SMc01845 -1.5 -1.6 transglycosylase transmembrane protein compare
SM_b20290 -1.5 -1.9 transcriptional regulator compare
SMc02833 -1.5 -1.7 penicillin-insensitive murein endopeptidase compare
SMc00712 -1.4 -1.3 hypothetical protein compare
SMc00982 -1.4 -4.2 dioxygenase compare
SMc00404 -1.4 -0.8 hypothetical protein compare
SM_b20728 -1.4 -1.5 hypothetical protein compare
SM_b20758 -1.4 -1.8 ArsR family transcriptional regulator compare
SMc02894 -1.4 -2.0 hypothetical protein compare
SMc00760 -1.4 -3.5 recombinase A compare
SMc03978 -1.4 -2.5 transketolase compare
SMc01258 -1.4 -3.8 hypothetical protein compare
SMc02052 -1.4 -0.9 hypothetical protein compare
SMa2089 -1.4 -2.0 hypothetical protein compare
SMa2289 -1.3 -1.0 hypothetical protein compare
SMc01204 -1.3 -5.4 transmembrane oxidoreductase compare
SMc05020 -1.3 -1.4 entericidin A precursor compare
SM_b20016 -1.3 -3.1 sugar ABC transporter permease compare
SMc04404 -1.3 -1.0 amino acid efflux transmembrane protein compare
SMc02266 -1.3 -1.2 hypothetical protein compare
SM_b20400 -1.3 -1.9 hypothetical protein compare
SMa1310 -1.3 -2.2 VirB7-like protein compare
SMc02827 -1.3 -2.2 hypothetical protein compare
SM_b20427 -1.3 -1.6 amino acid ABC transporter ATP-binding protein compare
SMc01360 -1.2 -1.4 aspartate carbamoyltransferase catalytic subunit compare
SMc00088 -1.2 -1.4 hypothetical protein compare
SMc00725 -1.2 -2.9 argininosuccinate lyase compare
SM_b21441 -1.2 -1.2 inosine-5'-monophosphate dehydrogenase compare
SM_b20357 -1.2 -1.5 histidine kinase compare
SMa0343 -1.2 -1.9 hypothetical protein compare
SM_b20811 -1.2 -1.1 hypothetical protein compare
SMc02143 -1.2 -2.2 phosphate ABC transporter permease compare
SMc01509 -1.2 -1.3 hypothetical protein compare
SM_b21028 -1.2 -1.4 hypothetical protein compare
SMc01119 -1.2 -1.4 hypothetical protein compare
SMc02867 -1.1 -2.1 multidrug-efflux system transmembrane protein compare
SM_b21212 -1.1 -2.0 hypothetical protein compare
SM_b21412 -1.1 -1.2 hypothetical protein compare
SM_b21475 -1.1 -1.2 hypothetical protein compare
SMc02718 -1.1 -1.4 hypothetical protein compare
SM_b20450 -1.1 -6.8 regulatory protein compare
SMa1243 -1.1 -2.0 Azu1 pseudoazurin compare
SMc04432 -1.1 -2.1 hypothetical protein compare
SM_b21454 -1.1 -1.2 hypothetical protein compare
SM_b20293 -1.1 -0.8 hypothetical protein compare
SMc00678 -1.1 -2.6 transcriptional regulator compare
SM_b20105 -1.1 -1.2 transcriptional regulator compare
SMc03128 -1.1 -2.1 ABC transporter permease compare
SM_b20258 -1.1 -1.8 transcriptional regulator compare
SM_b20935 -1.1 -1.3 transcriptional regulator compare
SM_b21213 -1.1 -2.9 serinethreonine protein phosphatase compare
SMc02783 -1.1 -1.5 hypothetical protein compare
SMc01653 -1.0 -2.2 ABC transporter ATP-binding protein compare
SMc01187 -1.0 -1.1 rare lipoprotein A compare
SMc00030 -1.0 -2.9 hypothetical protein compare
SMc02574 -1.0 -2.7 imidazoleglycerol-phosphate dehydratase compare
SM_b20026 -1.0 -0.7 hypothetical protein compare
SMc02362 -1.0 -1.8 cytochrome c-type biogenesis protein CcmE compare
SMa0734 -1.0 -1.2 hypothetical protein compare
SMa0905 -1.0 -0.8 hypothetical protein compare
SMa5010 -1.0 -0.6 hypothetical protein compare
SM_b20628 -1.0 -2.8 hypothetical protein compare
SMc02858 -1.0 -0.3 chaperone protein DnaJ compare
SMc02564 -1.0 -0.9 LysM domain/BON superfamily protein compare
SMa1053 -1.0 -0.7 hypothetical protein compare
SMc02141 -1.0 -1.4 phosphate transporter PhoU compare
SM_b21479 -1.0 -0.9 hypothetical protein compare
SMc03002 -1.0 -1.9 hypothetical protein compare
SMc00557 -1.0 -2.6 alanine racemase compare
SMc03072 -1.0 -1.2 hypothetical protein compare
SMc01351 -1.0 -1.8 hypothetical protein compare
SM_b21357 -1.0 -2.7 hypothetical protein compare
SMc04224 -0.9 -0.8 hypothetical protein compare
SMc01361 -0.9 -1.5 dihydroorotase compare
SMc04026 -0.9 -3.6 glutamate synthase compare
SMc04212 -0.9 -3.4 sensor histidine kinase transmembrane protein compare
SMa0886 -0.9 -0.9 hypothetical protein compare
SMc00104 -0.9 -1.4 hypothetical protein compare
SMa1711 -0.9 -2.3 arginase compare
SMc02693 -0.9 -1.0 peptidyl-tRNA hydrolase compare
SMc02822 -0.9 -1.5 hypothetical protein compare
SM_b21132 -0.9 -1.5 sulfate ABC transporter permease compare
SMc01261 -0.9 -2.8 transporter transmembrane protein compare
SMc04024 -0.9 -2.4 membrane-bound lytic murein transglycosylase compare
SMa2343 -0.9 -2.6 oxidoreductase compare
SM_b20909 -0.9 -0.9 hypothetical protein compare
SMc01364 -0.9 -0.6 DNA topoisomerase I compare
SMc02495 -0.9 -0.7 translaldolase compare
SMc01589 -0.9 -2.1 hypothetical protein compare
SMc04881 -0.9 -1.7 virulence associated protein compare
SMc00189 -0.9 -2.1 cytochrome C1 protein compare
SMc00650 -0.9 -0.9 hypothetical protein compare
SM_b20089 -0.9 -1.2 hypothetical protein compare
SMc03127 -0.9 -1.0 ABC transporter permease compare
SMc03968 -0.9 -2.2 oxidoreductase compare
SM_b20948 -0.9 -0.9 glucosyltransferase compare
SMc00879 -0.9 -3.1 transcriptional regulator compare
SM_b20608 -0.9 -1.8 ArsR family transcriptional regulator compare
SMc03159 -0.9 -1.1 ABC transporter ATP-binding protein compare
SMc03746 -0.9 -1.0 hypothetical protein compare
SMc00791 -0.9 -0.7 hypothetical protein compare
SMc01178 -0.9 -0.8 multidrug transmembrane resistance signal peptide protein compare
SMc02866 -0.9 -1.8 transcriptional regulator compare
SM_b20837 -0.8 -1.3 hypothetical protein compare
SM_b20042 -0.8 -1.8 hypothetical protein compare
SMc00019 -0.8 -0.8 hypothetical protein compare
SMa0848 -0.8 -1.5 hypothetical protein compare
SM_b20307 -0.8 -0.4 dihydroxyacetone kinase compare
SMc02484 -0.8 -2.1 amino acid efflux transmembrane protein compare
SMc02980 -0.8 -0.6 hypothetical protein compare
SMa0759 -0.8 -1.5 hypothetical protein compare
SMc00302 -0.8 -1.5 hypothetical protein compare
SMc04297 -0.8 -1.7 transcriptional regulator compare
SMa0396 -0.8 -2.5 ABC transporter permease compare
SMa1658 -0.8 -0.9 hypothetical protein compare
SMc04141 -0.8 -1.4 glutathione S-transferase compare
SMc01877 -0.8 -2.4 DNA repair protein compare
SMa0941 -0.8 -1.8 hypothetical protein compare
SMc02115 -0.8 -0.6 hypothetical protein compare
SM_b20221 -0.8 -1.9 epoxide hydrolase compare
SMc01424 -0.8 -1.3 nitrile hydratase subunit alpha protein compare
SM_b20371 -0.8 -2.7 ribose-5-phosphate isomerase B compare
SMc01789 -0.8 -2.7 signal peptide protein compare
SMa0166 -0.8 -2.1 hypothetical protein compare
SMc04266 -0.8 -1.4 hypothetical protein compare
SMc01501 -0.8 -1.4 mannitol 2-dehydrogenase compare
SMc04457 -0.8 -2.1 hypothetical protein compare
SMc01641 -0.8 -2.3 carnitinyl-CoA dehydratase compare
SMc00013 -0.8 -0.8 cytochrome C oxidase subunit III transmembrane protein compare
SMc00556 -0.8 -2.6 DNA repair protein RadA compare
SMa0503 -0.8 -2.1 ABC transporter permease compare
SMc01036 -0.8 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in stress experiments

For stress Sodium nitrate across organisms