Experiment set3IT045 for Sinorhizobium meliloti 1021

Compare to:

LB with Sodium nitrate 40 mM

200 most detrimental genes:

  gene name fitness t score description  
SMc02366 +3.9 30.5 transcriptional regulator compare
SMc02365 +3.7 10.5 protease precursor protein compare
SMc02367 +3.7 26.2 sensor histidine kinase transmembrane protein compare
SMc02640 +3.6 12.0 UDP-glucuronic acid epimerase compare
SMc02112 +3.5 21.7 hypothetical protein compare
SMc00150 +3.5 31.5 hypothetical protein compare
SMc02659 +3.4 15.3 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc03900 +3.2 24.8 cyclic beta-1,2-glucan ABc transporter compare
SMc04382 +3.2 27.3 beta-(1,2)-glucan production associated transmembrane protein compare
SMc00349 +3.1 16.3 GTP-binding protein LepA compare
SMc02713 +3.1 5.9 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc00647 +3.1 11.5 ribosomal large subunit pseudouridine synthase compare
SMc01858 +3.0 4.6 S-adenosyl-methyltransferase MraW compare
SMc04003 +2.8 5.4 50S ribosomal protein L36 compare
SMc02434 +2.7 9.6 hypothetical protein compare
SMc03069 +2.7 5.9 6-phosphogluconolactonase compare
SMc04454 +2.6 13.5 ABC transporter ATP-binding protein compare
SMc01099 +2.6 5.6 tRNA pseudouridine synthase A compare
SMc02695 +2.6 10.7 GTP-dependent nucleic acid-binding protein EngD compare
SMc00495 +2.6 7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03863 +2.5 6.7 50S ribosomal protein L19 compare
SMc00131 +2.4 17.1 transcriptional regulator compare
SMc00622 +2.4 14.5 ribonuclease D protein compare
SMc02137 +2.4 11.8 ornithine carbamoyltransferase compare
SMc03855 +2.4 5.6 hypothetical protein compare
SMc03996 +2.3 6.1 thiamine-phosphate pyrophosphorylase compare
SMc00458 +2.3 15.6 transcriptional regulator compare
SMc04094 +2.2 4.3 hypothetical protein compare
SMc02714 +2.2 3.5 hypothetical protein compare
SMc01907 +2.0 12.5 hypothetical protein compare
SMc01613 +2.0 7.3 ribose-5-phosphate isomerase B compare
SMc02058 +2.0 5.8 YAJC protein compare
SMc03826 +1.9 3.5 argininosuccinate synthase compare
SMc00320 +1.8 6.7 ribosome-binding factor A compare
SMc01440 +1.8 7.3 hydrolase serine protease transmembrane protein compare
SMc02385 +1.8 4.8 hypothetical protein compare
SMc00522 +1.8 9.5 ATP-dependent RNA helicase compare
SM_b20613 +1.8 10.0 C4-dicarboxylate transport transcriptional regulator compare
SMc00129 +1.8 8.4 sensor histidine kinase compare
SMc01206 +1.7 3.5 queuine tRNA-ribosyltransferase compare
SMc01124 +1.7 8.6 PII uridylyl-transferase compare
SMc04220 +1.7 1.8 transcriptional regulator compare
SMc00761 +1.7 9.0 oxidoreductase compare
SMc01454 +1.6 8.8 hypothetical protein compare
SMc01222 +1.6 7.7 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02520 +1.6 8.3 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc01223 +1.6 1.6 transcriptional regulator compare
SMc02407 +1.6 5.6 hypothetical protein compare
SM_b21580 +1.6 1.6 hypothetical protein compare
SMc00403 +1.6 6.6 NOL1/NOP2/SUN family signature protein compare
SMc00711 +1.6 6.1 cyclohexadienyl dehydrogenase compare
SMc00566 +1.6 3.1 hypothetical protein compare
SMc04000 +1.5 2.0 hypothetical protein compare
SMc03899 +1.5 1.4 hypothetical protein compare
SMc04001 +1.5 1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01698 +1.5 6.5 oxidoreductase compare
SMa0838 +1.5 1.9 SyrA protein involved in EPS production compare
SMc00482 +1.5 10.2 hypothetical protein compare
SM_b20143 +1.5 1.3 oligopeptide ABC transporter permease compare
SM_b22001 +1.5 1.7 hypothetical protein compare
SMa0643 +1.5 1.9 transposase compare
SM_b21397 +1.5 1.7 hypothetical protein compare
SMc01275 +1.4 5.8 ribosomal large subunit pseudouridine synthase C protein compare
SMc04199 +1.4 2.9 hypothetical protein compare
SMc00877 +1.4 8.2 transcriptional regulator compare
SMc00513 +1.4 6.9 amino acid-binding periplasmic protein compare
SMc02558 +1.3 4.6 hypothetical protein compare
SMc00727 +1.3 6.9 3-hydroxybutyryl-CoA dehydrogenase compare
SMc01120 +1.3 3.0 hypothetical protein compare
SMc01107 +1.3 4.5 hypothetical protein compare
SMc02765 +1.3 8.3 tryptophan synthase subunit alpha compare
SM_b21491 +1.3 7.2 hypothetical protein compare
SMc02757 +1.3 3.1 hypothetical protein compare
SMc01023 +1.2 2.2 triosephosphate isomerase compare
SMc02497 +1.2 2.9 hypothetical protein compare
SMc02799 +1.2 2.5 16S rRNA methyltransferase GidB compare
SM_b21591 +1.2 1.5 GntR family transcriptional regulator compare
SMc01769 +1.2 7.7 hypothetical protein compare
SMc00353 +1.2 2.0 transmembrane protein compare
SMc02639 +1.2 2.1 transcriptional regulator compare
SM_b20746 +1.2 1.1 hypothetical protein compare
SMc03930 +1.2 1.7 sarcosine oxidase subunit gamma compare
SMc00648 +1.2 4.3 hypothetical protein compare
SM_b21432 +1.2 4.7 iron uptake ABC transporter substrate-binding protein precursor compare
SMa0854 +1.2 1.7 3-ketoacyl-ACP reductase compare
SMc00176 +1.1 3.4 hypothetical protein compare
SMc02055 +1.1 1.6 phytoene synthase compare
SMc01472 +1.1 1.1 50S ribosomal protein L11 methyltransferase compare
SMc00419 +1.1 3.7 glutathione synthetase compare
SMc00169 +1.1 7.4 malic enzyme compare
SMc03780 +1.1 2.2 hypothetical protein compare
SMc02854 +1.1 3.6 signal peptide protein compare
SM_b21002 +1.1 2.9 methionine aminopeptidase compare
SMc02449 +1.1 2.3 acetyltransferase compare
SMa2020 +1.1 3.5 Transcriptional regulator compare
SMc01203 +1.1 2.6 hypothetical protein compare
SM_b20226 +1.1 1.7 hypothetical protein compare
SMc00325 +1.1 5.0 hypothetical protein compare
SMa0164 +1.1 3.6 hypothetical protein compare
SMc02138 +1.1 4.9 acetylornithine transaminase compare
SM_b21374 +1.1 2.6 tagatose kinase (EC 2.7.1.101) (from data) compare
SM_b20684 +1.1 7.5 hypothetical protein compare
SM_b21253 +1.0 2.9 hypothetical protein compare
SMc02716 +1.0 2.4 hypothetical protein compare
SMc04174 +1.0 0.8 signal peptide protein compare
SMc02245 +1.0 4.8 dihydroorotate dehydrogenase 2 compare
SMc01139 +1.0 4.5 RNA polymerase factor sigma-54 compare
SM_b20294 +1.0 0.9 transcriptional regulator NanR compare
SM_b21347 +1.0 1.8 pectin degradation protein compare
SMc00998 +1.0 5.2 signal peptide protein compare
SMc01103 +1.0 2.9 Ribokinase (EC 2.7.1.15) (from data) compare
SMc01587 +1.0 2.0 hypothetical protein compare
SMc03111 +1.0 5.1 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc00788 +1.0 4.6 peptide ABC transporter permease compare
SM_b21398 +1.0 1.5 hypothetical protein compare
SMc03969 +1.0 3.3 hypothetical protein compare
SMc00565 +1.0 1.1 50S ribosomal protein L9 compare
SMc02050 +1.0 3.7 trigger factor compare
SMc02766 +1.0 6.5 tryptophan synthase subunit beta compare
SMc04002 +1.0 3.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc03880 +1.0 4.1 hypothetical protein compare
SMc00412 +1.0 3.4 orotidine 5'-phosphate decarboxylase compare
SMc02978 +1.0 2.7 hypothetical protein compare
SMc03933 +1.0 6.3 sarcosine oxidase subunit B protein compare
SM_b20540 +1.0 1.0 hypothetical protein compare
SMc03931 +1.0 7.0 sarcosine oxidase subunit alpha compare
SM_b20355 +1.0 3.2 hypothetical protein compare
SMc02901 +1.0 0.7 hypothetical protein compare
SM_b21429 +1.0 3.6 iron ABC transporter ATP-binding protein compare
SMc02864 +1.0 1.1 molybdopterin biosynthesis protein MoeB compare
SMc02383 +1.0 5.2 hypothetical protein compare
SMc00804 +1.0 1.2 hypothetical protein compare
SMc00709 +1.0 2.6 hypothetical protein compare
SM_b21431 +1.0 3.7 hypothetical protein compare
SMc02238 +0.9 1.4 hypothetical protein compare
SMc01852 +0.9 5.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc01622 +0.9 2.8 oxidoreductase compare
SMc00329 +0.9 1.5 iron response regulator protein compare
SMc02095 +0.9 4.2 hypothetical protein compare
SMc03842 +0.9 1.4 hypothetical protein compare
SMc00344 +0.9 2.2 hypothetical protein compare
SMc04441 +0.9 1.3 hypothetical protein compare
SMc02384 +0.9 4.2 glycosyltransferase transmembrane protein compare
SMc00806 +0.9 2.2 hypothetical protein compare
SM_b20862 +0.9 1.6 hypothetical protein compare
SMc01349 +0.9 4.0 hypothetical protein compare
SMc02354 +0.9 1.8 hypothetical protein compare
SMc03288 +0.9 2.4 hypothetical protein compare
SMc01660 +0.9 1.9 hypothetical protein compare
SMa1073 +0.9 1.3 TRm23b IS ATP-binding protein compare
SMc01341 +0.9 3.3 hypothetical protein compare
SMc02561 +0.9 2.1 hypothetical protein compare
SM_b21192 +0.9 5.7 fructose-1,6-bisphosphate aldolase compare
SMc00600 +0.9 1.8 molybdopterin MPT converting factor subunit 1 compare
SMc01953 +0.9 4.3 2-component receiver domain-containing protein compare
SMc02373 +0.9 1.0 hypothetical protein compare
SMa1052 +0.9 1.0 hypothetical protein compare
SMc00853 +0.9 2.1 hypothetical protein compare
SMc01439 +0.9 1.3 hypothetical protein compare
SMc01441 +0.9 3.7 membrane bound protease compare
SM_b21501 +0.9 2.1 hypothetical protein compare
SM_b20146 +0.9 2.9 pyridoxal phosphate biosynthetic protein compare
SMc02269 +0.9 4.3 capsular polysaccharide biosynthesis/export protein compare
SM_b20897 +0.9 0.9 hypothetical protein compare
SMc00321 +0.9 2.9 tRNA pseudouridine synthase B compare
SMc02173 +0.9 1.4 hypothetical protein compare
SM_b21551 +0.9 0.8 hypothetical protein compare
SMc02565 +0.9 2.8 hypothetical protein compare
SMc00079 +0.9 2.1 hypothetical protein compare
SMc00070 +0.9 2.8 signal peptide protein compare
SM_b21485 +0.9 1.4 hypothetical protein compare
SMc02778 +0.9 0.8 hydroxyacid aldolase compare
SMc00976 +0.9 1.4 enoyl-CoA hydratase compare
SMa0810 +0.8 1.4 nitrogen fixation protein FixU compare
SMc04428 +0.8 2.1 hypothetical protein compare
SM_b20302 +0.8 1.7 hypothetical protein compare
SMc00061 +0.8 2.3 hypothetical protein compare
SM_b21430 +0.8 4.9 iron ABC transporter permease compare
SMc00191 +0.8 1.2 hypothetical protein compare
SMc03153 +0.8 1.5 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc02056 +0.8 2.7 hypothetical protein compare
SMc04235 +0.8 3.6 tRNA-dihydrouridine synthase A compare
SMc00876 +0.8 2.7 ATP-binding MRP protein compare
SM_b20082 +0.8 1.5 hypothetical protein compare
SMc00787 +0.8 3.1 peptide ABC transporter permease compare
SMa0144 +0.8 0.7 hypothetical protein compare
SM_b20751 +0.8 1.4 3-hydroxyisobutyrate dehydrogenase compare
SM_b21569 +0.8 1.0 transcriptional regulator compare
SMa1597 +0.8 1.7 Pilus assembly chaperone compare
SMc02306 +0.8 1.0 hypothetical protein compare
SMa0874 +0.8 2.0 NodN dehydratase compare
SMc01726 +0.8 1.9 acetylglutamate kinase compare
SM_b21280 +0.8 2.0 phosphoribosyltransferase compare
SMc00187 +0.8 1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc01041 +0.8 1.2 NIFR3-like protein compare
SMc00865 +0.8 2.4 hypothetical protein compare
SM_b20983 +0.8 1.9 hypothetical protein compare
SMc02241 +0.8 3.6 hypothetical protein compare
SMc04043 +0.8 2.6 hypothetical protein compare
SMc04348 +0.8 2.2 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in stress experiments

For stress Sodium nitrate across organisms