Experiment set3IT045 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.9 -9.0 S41 family peptidase compare
PFLU_RS03645 -5.4 -14.8 tetratricopeptide repeat protein compare
PFLU_RS01605 -5.4 -3.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28695 -4.7 -6.4 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.3 -11.9 phosphoserine phosphatase SerB compare
PFLU_RS27365 -4.3 -10.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24125 -4.2 -2.9 cold-shock protein compare
PFLU_RS01900 -4.2 -7.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04470 -4.1 -10.5 histidinol dehydrogenase compare
PFLU_RS01620 -4.1 -9.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29725 -4.1 -15.2 phosphate regulon transcriptional regulatory protein PhoB compare
PFLU_RS20540 -4.1 -11.6 phosphoribosylanthranilate isomerase compare
PFLU_RS28535 -4.0 -16.5 dihydroxy-acid dehydratase compare
PFLU_RS01895 -4.0 -7.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS27370 -4.0 -12.6 anthranilate phosphoribosyltransferase compare
PFLU_RS28655 -3.9 -13.4 HAD family hydrolase compare
PFLU_RS04465 -3.9 -10.3 ATP phosphoribosyltransferase compare
PFLU_RS07650 -3.9 -17.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25640 -3.9 -11.9 ketol-acid reductoisomerase compare
PFLU_RS12975 -3.8 -5.7 DUF934 domain-containing protein compare
PFLU_RS18505 -3.7 -9.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22595 -3.7 -2.6 OmpA family protein compare
PFLU_RS20575 -3.7 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06320 -3.7 -4.9 OmpH family outer membrane protein compare
PFLU_RS22105 -3.6 -5.5 cysteine synthase CysM compare
PFLU_RS12980 -3.6 -10.4 nitrite/sulfite reductase compare
PFLU_RS29095 -3.5 -25.6 polyphosphate kinase 1 compare
PFLU_RS28390 -3.5 -12.7 methionine biosynthesis protein MetW compare
PFLU_RS27620 -3.5 -21.5 acyl-CoA dehydrogenase compare
PFLU_RS28165 -3.5 -13.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS22095 -3.5 -21.6 GTP diphosphokinase compare
PFLU_RS29730 -3.5 -13.4 phosphate regulon sensor histidine kinase PhoR compare
PFLU_RS29515 -3.5 -14.3 RidA family protein compare
PFLU_RS03970 -3.4 -12.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25755 -3.4 -3.3 pantoate--beta-alanine ligase compare
PFLU_RS23065 -3.4 -11.6 phosphate acyltransferase PlsX compare
PFLU_RS26545 -3.4 -11.9 sel1 repeat family protein compare
PFLU_RS23070 -3.3 -2.1 50S ribosomal protein L32 compare
PFLU_RS21300 -3.3 -8.5 cysteine hydrolase compare
PFLU_RS00180 -3.3 -8.8 tryptophan synthase subunit beta compare
PFLU_RS00175 -3.3 -9.1 tryptophan synthase subunit alpha compare
PFLU_RS22740 -3.3 -6.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS07165 -3.3 -17.3 sensor histidine kinase conserved
PFLU_RS28965 -3.3 -11.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01625 -3.2 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS07160 -3.2 -17.1 response regulator conserved
PFLU_RS25735 -3.2 -7.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02590 -3.2 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS24765 -3.2 -21.1 2-isopropylmalate synthase compare
PFLU_RS01485 -3.2 -16.9 cellulase compare
PFLU_RS20580 -3.2 -15.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -3.2 -15.2 3-isopropylmalate dehydrogenase compare
PFLU_RS01610 -3.2 -13.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS03770 -3.2 -15.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS03765 -3.1 -11.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS20510 -3.0 -14.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28385 -3.0 -14.5 homoserine O-acetyltransferase compare
PFLU_RS04070 -3.0 -5.9 peptide chain release factor 3 compare
PFLU_RS09055 -2.9 -4.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25360 -2.9 -8.8 glutamate 5-kinase compare
PFLU_RS18530 -2.9 -5.0 DNA translocase FtsK compare
PFLU_RS13540 -2.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS07655 -2.8 -7.2 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS01965 -2.8 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS26770 -2.8 -14.2 DedA family protein compare
PFLU_RS25750 -2.8 -7.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23680 -2.8 -18.2 long-chain fatty acid--CoA ligase compare
PFLU_RS31830 -2.8 -1.8 hypothetical protein compare
PFLU_RS01320 -2.7 -10.1 phosphoenolpyruvate carboxykinase compare
PFLU_RS08505 -2.7 -8.8 protease HtpX compare
PFLU_RS08155 -2.7 -4.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS24485 -2.7 -12.5 hypothetical protein compare
PFLU_RS24025 -2.7 -12.5 quinolinate synthase NadA compare
PFLU_RS22070 -2.7 -6.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08410 -2.7 -8.0 HTH-type transcriptional regulator CysB compare
PFLU_RS23310 -2.7 -10.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS20515 -2.7 -3.6 amidophosphoribosyltransferase compare
PFLU_RS04435 -2.6 -7.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS21060 -2.5 -4.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS02365 -2.5 -13.2 glycosyltransferase compare
PFLU_RS26640 -2.5 -12.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS21495 -2.5 -3.3 TlpA family protein disulfide reductase compare
PFLU_RS00415 -2.4 -2.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25730 -2.4 -16.6 PAS domain S-box protein compare
PFLU_RS26905 -2.3 -11.0 transcriptional regulator NrdR compare
PFLU_RS08160 -2.3 -9.1 sugar transferase compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS23920 -2.3 -4.3 septation protein A compare
PFLU_RS25920 -2.3 -4.3 outer membrane protein assembly factor BamE compare
PFLU_RS00510 -2.3 -15.5 CitMHS family transporter conserved
PFLU_RS25815 -2.3 -2.6 transcription termination/antitermination protein NusA compare
PFLU_RS28645 -2.3 -14.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS23305 -2.2 -11.2 arginine N-succinyltransferase compare
PFLU_RS20690 -2.2 -5.2 hypothetical protein compare
PFLU_RS01960 -2.2 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS04440 -2.2 -10.1 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS07785 -2.2 -11.7 VacJ family lipoprotein compare
PFLU_RS14550 -2.2 -9.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS19165 -2.1 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS26565 -2.1 -1.8 rRNA maturation RNase YbeY compare
PFLU_RS04315 -2.0 -4.2 rod shape-determining protein MreD compare
PFLU_RS09980 -2.0 -14.3 peptidase S41 compare
PFLU_RS04430 -1.9 -8.1 ATP-binding cassette domain-containing protein compare
PFLU_RS25645 -1.9 -1.3 acetolactate synthase small subunit compare
PFLU_RS25225 -1.9 -9.4 disulfide bond formation protein B compare
PFLU_RS18665 -1.9 -3.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS26020 -1.9 -11.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS18615 -1.9 -2.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS07150 -1.8 -10.9 tripartite tricarboxylate transporter substrate binding protein conserved
PFLU_RS28650 -1.8 -7.2 RNA pyrophosphohydrolase compare
PFLU_RS28315 -1.8 -1.4 response regulator compare
PFLU_RS04445 -1.8 -6.5 ABC transporter substrate-binding protein compare
PFLU_RS25740 -1.8 -5.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24790 -1.8 -5.0 tetratricopeptide repeat protein compare
PFLU_RS25715 -1.8 -9.7 RNA polymerase-binding protein DksA compare
PFLU_RS18635 -1.8 -3.3 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS04715 -1.8 -4.8 D-alanine--D-alanine ligase compare
PFLU_RS19175 -1.8 -8.4 trigger factor compare
PFLU_RS15410 -1.8 -2.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18640 -1.8 -4.0 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS05250 -1.7 -4.6 elongation factor 4 compare
PFLU_RS07275 -1.7 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18655 -1.7 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS04325 -1.7 -11.9 ribonuclease G compare
PFLU_RS18620 -1.7 -4.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS21995 -1.7 -3.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS16390 -1.7 -2.6 DUF411 domain-containing protein compare
PFLU_RS03610 -1.6 -6.0 redox-regulated ATPase YchF compare
PFLU_RS18670 -1.6 -2.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS08165 -1.6 -2.2 acyl carrier protein compare
PFLU_RS02970 -1.6 -6.7 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS02370 -1.6 -9.1 glycosyltransferase compare
PFLU_RS30160 -1.5 -3.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS05540 -1.5 -9.8 LysR family transcriptional regulator compare
PFLU_RS29490 -1.5 -7.9 ribonuclease PH compare
PFLU_RS23185 -1.5 -9.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS18625 -1.5 -5.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS06555 -1.5 -8.3 OmpA family protein compare
PFLU_RS24590 -1.5 -3.3 cytochrome c assembly protein compare
PFLU_RS18675 -1.4 -2.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS28270 -1.4 -3.3 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS26735 -1.4 -8.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS27440 -1.4 -6.2 nucleotidyltransferase family protein compare
PFLU_RS04660 -1.4 -4.5 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS21965 -1.4 -9.9 transporter compare
PFLU_RS28320 -1.4 -2.0 glutathione synthase compare
PFLU_RS25585 -1.4 -2.0 exodeoxyribonuclease V subunit alpha compare
PFLU_RS15610 -1.4 -4.9 helix-turn-helix transcriptional regulator compare
PFLU_RS13120 -1.4 -1.7 hypothetical protein compare
PFLU_RS12685 -1.4 -4.5 hypothetical protein compare
PFLU_RS29760 -1.4 -7.7 phosphate ABC transporter permease PstA compare
PFLU_RS08670 -1.3 -0.9 heme lyase CcmF/NrfE family subunit compare
PFLU_RS24095 -1.3 -2.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS24085 -1.3 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS11980 -1.3 -5.3 precorrin-6A synthase (deacetylating) compare
PFLU_RS30165 -1.3 -6.8 ParA family protein compare
PFLU_RS21985 -1.3 -3.9 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS14430 -1.3 -2.2 arsenate reductase ArsC compare
PFLU_RS25800 -1.3 -4.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS00190 -1.3 -2.0 DUF883 domain-containing protein compare
PFLU_RS07280 -1.3 -8.1 outer membrane protein assembly factor BamC compare
PFLU_RS22600 -1.3 -1.6 RNA polymerase sigma factor SigX compare
PFLU_RS11505 -1.3 -2.4 ABC transporter substrate-binding protein compare
PFLU_RS02975 -1.3 -5.0 precorrin-3B synthase compare
PFLU_RS04385 -1.3 -7.2 RNase adapter RapZ compare
PFLU_RS04475 -1.3 -7.6 histidinol-phosphate transaminase compare
PFLU_RS28725 -1.3 -8.4 DUF2059 domain-containing protein compare
PFLU_RS14820 -1.2 -4.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS07695 -1.2 -2.7 beta-N-acetylhexosaminidase compare
PFLU_RS08655 -1.2 -1.4 heme ABC transporter permease compare
PFLU_RS02460 -1.2 -8.1 alpha/beta fold hydrolase compare
PFLU_RS28325 -1.2 -5.9 energy transducer TonB compare
PFLU_RS05885 -1.2 -4.4 recombinase RecA compare
PFLU_RS22005 -1.2 -7.7 cobyric acid synthase compare
PFLU_RS31290 -1.2 -1.9 EamA family transporter compare
PFLU_RS18645 -1.2 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS24090 -1.2 -3.1 Holliday junction branch migration protein RuvA compare
PFLU_RS29885 -1.2 -7.3 LysR family transcriptional regulator compare
PFLU_RS21645 -1.2 -5.6 chemotaxis protein CheA compare
PFLU_RS27380 -1.2 -7.2 anthranilate synthase component I compare
PFLU_RS08665 -1.2 -1.9 cytochrome c maturation protein CcmE compare
PFLU_RS29275 -1.2 -4.3 DUF484 family protein compare
PFLU_RS05210 -1.2 -1.9 HU family DNA-binding protein compare
PFLU_RS13000 -1.2 -9.1 methionine synthase compare
PFLU_RS04015 -1.2 -2.0 1-phosphofructokinase compare
PFLU_RS09500 -1.2 -1.4 hypothetical protein compare
PFLU_RS26490 -1.1 -2.6 cation diffusion facilitator family transporter compare
PFLU_RS31100 -1.1 -3.4 preprotein translocase subunit SecG compare
PFLU_RS05610 -1.1 -5.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00310 -1.1 -1.8 twin transmembrane helix small protein compare
PFLU_RS27265 -1.1 -2.6 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS13715 -1.1 -1.6 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS28850 -1.1 -8.8 OprD family porin compare
PFLU_RS22725 -1.1 -2.5 transcriptional regulator compare
PFLU_RS19520 -1.1 -2.1 substrate-binding domain-containing protein compare
PFLU_RS13015 -1.1 -4.0 precorrin-4 C(11)-methyltransferase compare
PFLU_RS29875 -1.1 -7.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29555 -1.1 -7.2 HDOD domain-containing protein compare
PFLU_RS29090 -1.1 -5.4 exopolyphosphatase compare
PFLU_RS25595 -1.1 -1.2 exodeoxyribonuclease V subunit gamma compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Trisodium citrate dihydrate across organisms