Experiment set3IT045 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Paraquat dichloride 0.1 mg/ml

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09935 -5.8 -4.0 DUF4105 domain-containing protein compare
ABZR86_RS18770 -5.2 -7.5 SIS domain-containing protein compare
ABZR86_RS12885 -4.6 -3.2 magnesium-translocating P-type ATPase compare
ABZR86_RS09885 -4.3 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS05550 -3.9 -5.3 lipopolysaccharide assembly protein LapB compare
ABZR86_RS09535 -3.5 -2.2 preprotein translocase subunit YajC compare
ABZR86_RS11655 -3.5 -9.2 SLC13 family permease compare
ABZR86_RS18760 -3.4 -14.0 glycosyltransferase compare
ABZR86_RS14700 -3.1 -6.5 glucose-6-phosphate dehydrogenase compare
ABZR86_RS18360 -3.1 -13.7 response regulator transcription factor compare
ABZR86_RS02740 -3.0 -9.9 NfuA family Fe-S biogenesis protein compare
ABZR86_RS18450 -2.9 -3.9 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS20775 -2.8 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18585 -2.8 -10.4 polysaccharide biosynthesis/export family protein compare
ABZR86_RS03435 -2.8 -9.8 GTP cyclohydrolase II compare
ABZR86_RS16525 -2.8 -7.5 alpha/beta fold hydrolase compare
ABZR86_RS18765 -2.8 -3.0 dehydrogenase compare
ABZR86_RS18780 -2.7 -3.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS18705 -2.7 -2.6 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS19235 -2.7 -4.4 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS12280 -2.6 -2.1 dihydrolipoyl dehydrogenase compare
ABZR86_RS11485 -2.5 -7.9 hypothetical protein compare
ABZR86_RS18830 -2.5 -7.1 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS12005 -2.4 -1.5 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS07180 -2.4 -6.0 RNA polymerase sigma factor RpoE compare
ABZR86_RS18775 -2.4 -3.1 nucleotidyltransferase family protein compare
ABZR86_RS15330 -2.3 -10.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18185 -2.2 -9.6 ferredoxin--NADP reductase compare
ABZR86_RS18545 -2.2 -8.3 hypothetical protein compare
ABZR86_RS18655 -2.2 -7.9 transketolase compare
ABZR86_RS08250 -2.1 -3.7 phosphate signaling complex protein PhoU compare
ABZR86_RS00685 -2.1 -2.4 carbon storage regulator CsrA compare
ABZR86_RS06030 -2.0 -1.8 transcription termination factor NusA compare
ABZR86_RS16410 -2.0 -7.4 ABC transporter ATP-binding protein compare
ABZR86_RS16405 -1.9 -11.2 ABC transporter permease compare
ABZR86_RS18815 -1.9 -3.7 FAD-binding protein compare
ABZR86_RS01945 -1.7 -2.9 preprotein translocase subunit SecG compare
ABZR86_RS12415 -1.7 -4.3 NADP-dependent malic enzyme compare
ABZR86_RS22135 -1.7 -3.5 hypothetical protein compare
ABZR86_RS19805 -1.6 -5.1 HPr(Ser) kinase/phosphatase compare
ABZR86_RS09145 -1.6 -4.6 hypothetical protein compare
ABZR86_RS08755 -1.6 -7.1 membrane protein insertion efficiency factor YidD compare
ABZR86_RS12215 -1.6 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS20005 -1.5 -4.6 YfhL family 4Fe-4S dicluster ferredoxin compare
ABZR86_RS09075 -1.5 -1.5 NrsF family protein compare
ABZR86_RS18730 -1.5 -5.1 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS07820 -1.5 -1.7 Spy/CpxP family protein refolding chaperone compare
ABZR86_RS10710 -1.5 -1.9 transcriptional regulator NrdR compare
ABZR86_RS00570 -1.5 -4.5 acetoacetyl-CoA reductase compare
ABZR86_RS12410 -1.5 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS09840 -1.4 -1.3 Trm112 family protein compare
ABZR86_RS21725 -1.4 -9.2 YhdP family protein compare
ABZR86_RS18720 -1.4 -3.2 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS13865 -1.4 -1.2 DNA topoisomerase I compare
ABZR86_RS10830 -1.4 -2.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS07560 -1.3 -6.2 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS19560 -1.3 -5.1 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS11825 -1.3 -2.3 citrate synthase compare
ABZR86_RS05700 -1.3 -2.7 SsrA-binding protein SmpB compare
ABZR86_RS18600 -1.3 -10.4 YjbH domain-containing protein compare
ABZR86_RS07300 -1.2 -8.1 SurA N-terminal domain-containing protein compare
ABZR86_RS18725 -1.2 -3.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR86_RS06580 -1.2 -1.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS07665 -1.2 -3.7 exodeoxyribonuclease V subunit beta compare
ABZR86_RS19865 -1.2 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS08890 -1.2 -1.2 hypothetical protein compare
ABZR86_RS18960 -1.2 -4.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18490 -1.1 -1.9 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS04920 -1.1 -1.5 pentapeptide repeat-containing protein compare
ABZR86_RS06265 -1.1 -5.1 3-deoxy-D-manno-octulosonic acid kinase compare
ABZR86_RS08860 -1.1 -3.8 50S ribosomal protein L9 compare
ABZR86_RS13415 -1.1 -1.7 DUF1656 domain-containing protein compare
ABZR86_RS08435 -1.1 -3.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS20560 -1.1 -3.0 hypothetical protein compare
ABZR86_RS02180 -1.1 -3.6 high frequency lysogenization protein HflD compare
ABZR86_RS09380 -1.1 -3.6 response regulator transcription factor compare
ABZR86_RS07245 -1.1 -7.1 pyruvate, water dikinase regulatory protein compare
ABZR86_RS07660 -1.0 -3.2 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS16415 -1.0 -8.2 FAD-binding oxidoreductase compare
ABZR86_RS12925 -1.0 -6.5 cytochrome c oxidase subunit I compare
ABZR86_RS18365 -1.0 -8.5 ATP-binding protein compare
ABZR86_RS02215 -1.0 -2.2 FHA domain-containing protein compare
ABZR86_RS03035 -1.0 -1.2 CBS domain-containing protein compare
ABZR86_RS02255 -1.0 -1.1 tRNA-Gly compare
ABZR86_RS07535 -1.0 -5.3 acyl-CoA dehydrogenase family protein compare
ABZR86_RS05995 -1.0 -7.8 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS16930 -1.0 -5.9 rhodanese-like domain-containing protein compare
ABZR86_RS17180 -1.0 -5.9 glycosyltransferase compare
ABZR86_RS02305 -1.0 -1.6 hypothetical protein compare
ABZR86_RS13895 -1.0 -7.0 glycosyltransferase family 39 protein compare
ABZR86_RS17095 -1.0 -4.2 protein-disulfide reductase DsbD compare
ABZR86_RS10315 -1.0 -4.3 Imm42 family immunity protein compare
ABZR86_RS06275 -0.9 -2.2 DUF6165 family protein compare
ABZR86_RS14580 -0.9 -1.8 DUF3224 domain-containing protein compare
ABZR86_RS18495 -0.9 -5.7 polysaccharide biosynthesis tyrosine autokinase compare
ABZR86_RS08710 -0.9 -5.5 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS03445 -0.9 -4.2 TetR/AcrR family transcriptional regulator compare
ABZR86_RS06270 -0.9 -4.5 glycosyltransferase family 9 protein compare
ABZR86_RS15460 -0.9 -1.7 type I glutamate--ammonia ligase compare
ABZR86_RS13880 -0.9 -1.8 peptide deformylase compare
ABZR86_RS20570 -0.9 -3.1 acetyl-CoA C-acyltransferase compare
ABZR86_RS09960 -0.9 -3.3 pilin compare
ABZR86_RS07265 -0.9 -2.8 protein phosphatase 2C domain-containing protein compare
ABZR86_RS12760 -0.9 -5.7 LTA synthase family protein compare
ABZR86_RS18595 -0.9 -3.4 capsule biosynthesis GfcC family protein compare
ABZR86_RS12895 -0.8 -2.9 heme o synthase compare
ABZR86_RS16290 -0.8 -4.7 alpha/beta family hydrolase compare
ABZR86_RS05545 -0.8 -5.1 glycosyltransferase family 4 protein compare
ABZR86_RS02725 -0.8 -4.9 RluA family pseudouridine synthase compare
ABZR86_RS05570 -0.8 -3.4 (d)CMP kinase compare
ABZR86_RS13935 -0.8 -2.6 lipid A biosynthesis acyltransferase compare
ABZR86_RS09450 -0.8 -2.3 winged helix-turn-helix transcriptional regulator compare
ABZR86_RS12605 -0.8 -1.0 thioredoxin TrxA compare
ABZR86_RS06000 -0.8 -3.6 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS05240 -0.8 -2.9 hypothetical protein compare
ABZR86_RS09400 -0.8 -3.5 MtnX-like HAD-IB family phosphatase compare
ABZR86_RS11885 -0.8 -2.2 ATP-binding cassette domain-containing protein compare
ABZR86_RS18825 -0.8 -3.2 glycosyltransferase compare
ABZR86_RS10035 -0.8 -4.3 glycosyltransferase family 2 protein compare
ABZR86_RS19710 -0.8 -6.3 glycosyltransferase family 2 protein compare
ABZR86_RS05820 -0.7 -2.6 GntR family transcriptional regulator compare
ABZR86_RS18735 -0.7 -3.8 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS21335 -0.7 -0.8 response regulator transcription factor compare
ABZR86_RS08165 -0.7 -2.2 metal-dependent hydrolase compare
ABZR86_RS13130 -0.7 -1.0 hypothetical protein compare
ABZR86_RS19225 -0.7 -2.8 site-specific tyrosine recombinase XerD compare
ABZR86_RS07305 -0.7 -0.9 tRNA-Asp compare
ABZR86_RS16680 -0.7 -2.3 AI-2E family transporter compare
ABZR86_RS14690 -0.7 -2.8 phosphogluconate dehydratase compare
ABZR86_RS19060 -0.7 -3.5 L-serine ammonia-lyase compare
ABZR86_RS18715 -0.7 -3.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS03135 -0.7 -1.0 hypothetical protein compare
ABZR86_RS09660 -0.7 -2.2 MerR family transcriptional regulator compare
ABZR86_RS16040 -0.7 -0.7 molybdopterin-dependent oxidoreductase compare
ABZR86_RS10360 -0.7 -1.5 response regulator compare
ABZR86_RS16345 -0.7 -5.3 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS02310 -0.7 -1.5 hypothetical protein compare
ABZR86_RS10220 -0.7 -1.2 type II secretion system protein N compare
ABZR86_RS00800 -0.7 -1.3 tRNA-Glu compare
ABZR86_RS09845 -0.7 -5.1 DUF1631 domain-containing protein compare
ABZR86_RS14320 -0.7 -1.6 RICIN domain-containing protein compare
ABZR86_RS13430 -0.7 -2.1 DUF4156 domain-containing protein compare
ABZR86_RS15980 -0.7 -2.3 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS15640 -0.7 -1.0 orotate phosphoribosyltransferase compare
ABZR86_RS19970 -0.7 -1.7 oxidative damage protection protein compare
ABZR86_RS04640 -0.7 -3.5 FecR domain-containing protein compare
ABZR86_RS06575 -0.6 -3.8 Mth938-like domain-containing protein compare
ABZR86_RS11895 -0.6 -1.1 YicC/YloC family endoribonuclease compare
ABZR86_RS19800 -0.6 -3.9 RNase adapter RapZ compare
ABZR86_RS10155 -0.6 -0.9 HAMP domain-containing sensor histidine kinase compare
ABZR86_RS21355 -0.6 -1.9 septum site-determining protein MinD compare
ABZR86_RS21280 -0.6 -2.4 hypothetical protein compare
ABZR86_RS02230 -0.6 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS14100 -0.6 -3.8 DNA adenine methylase compare
ABZR86_RS07215 -0.6 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS05440 -0.6 -3.3 tetratricopeptide repeat protein compare
ABZR86_RS05665 -0.6 -3.8 DNA repair protein RecN compare
ABZR86_RS07900 -0.6 -1.8 transcriptional repressor compare
ABZR86_RS07175 -0.6 -1.2 sigma-E factor negative regulatory protein compare
ABZR86_RS11870 -0.6 -4.5 phospholipid-binding protein MlaC compare
ABZR86_RS02200 -0.6 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS01755 -0.6 -2.4 helix-turn-helix domain-containing protein compare
ABZR86_RS09015 -0.6 -2.1 anti-sigma factor compare
ABZR86_RS18215 -0.6 -1.0 translesion error-prone DNA polymerase V autoproteolytic subunit compare
ABZR86_RS12905 -0.6 -1.4 hypothetical protein compare
ABZR86_RS11735 -0.6 -0.7 large-conductance mechanosensitive channel protein MscL compare
ABZR86_RS05910 -0.6 -2.5 cupin domain-containing protein compare
ABZR86_RS21245 -0.6 -3.4 N-acetylmuramoyl-L-alanine amidase compare
ABZR86_RS15890 -0.6 -2.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS16045 -0.6 -3.1 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS11105 -0.6 -1.9 Fructokinase (EC 2.7.1.4) (from data) compare
ABZR86_RS02760 -0.6 -4.1 TraB/GumN family protein compare
ABZR86_RS19080 -0.6 -2.6 cytochrome b compare
ABZR86_RS08355 -0.6 -2.1 FtsH protease activity modulator HflK compare
ABZR86_RS21465 -0.6 -2.4 PilX N-terminal domain-containing pilus assembly protein compare
ABZR86_RS08060 -0.6 -1.7 hypothetical protein compare
ABZR86_RS03685 -0.6 -2.0 hypothetical protein compare
ABZR86_RS04825 -0.6 -2.4 NmrA family NAD(P)-binding protein compare
ABZR86_RS08350 -0.6 -3.2 protease modulator HflC compare
ABZR86_RS12505 -0.6 -3.2 SDR family oxidoreductase compare
ABZR86_RS12060 -0.6 -1.2 HAD family hydrolase compare
ABZR86_RS22000 -0.6 -2.2 acyl-CoA thioesterase compare
ABZR86_RS08480 -0.5 -1.9 methylisocitrate lyase compare
ABZR86_RS12220 -0.5 -1.1 Mpo1-like protein compare
ABZR86_RS01585 -0.5 -2.4 LysR family transcriptional regulator compare
ABZR86_RS05000 -0.5 -1.0 type II secretion system protein GspK compare
ABZR86_RS14930 -0.5 -3.4 exodeoxyribonuclease III compare
ABZR86_RS20675 -0.5 -1.5 1-phosphofructokinase family hexose kinase compare
ABZR86_RS02300 -0.5 -2.6 hypothetical protein compare
ABZR86_RS19025 -0.5 -1.5 homoserine O-succinyltransferase compare
ABZR86_RS06780 -0.5 -2.2 CvpA family protein compare
ABZR86_RS11280 -0.5 -3.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR86_RS21575 -0.5 -2.9 [protein-PII] uridylyltransferase compare
ABZR86_RS04495 -0.5 -0.6 hypothetical protein compare
ABZR86_RS09385 -0.5 -1.8 sensor histidine kinase compare
ABZR86_RS06595 -0.5 -2.0 5'/3'-nucleotidase SurE compare
ABZR86_RS12205 -0.5 -2.7 co-chaperone DjlA compare
ABZR86_RS11780 -0.5 -2.0 DUF58 domain-containing protein compare
ABZR86_RS18680 -0.5 -2.6 maleylacetoacetate isomerase compare
ABZR86_RS03315 -0.5 -0.9 phage tail protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Paraquat dichloride in Dyella japonica UNC79MFTsu3.2

For stress Paraquat dichloride across organisms