Experiment set3IT044 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_327 -2.1 -2.3 hypothetical protein compare
Pf1N1B4_722 -2.1 -2.7 SAM-dependent methyltransferases compare
Pf1N1B4_1749 -2.0 -2.2 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2209 -1.8 -8.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3408 -1.8 -2.8 Transcriptional regulator, AraC family compare
Pf1N1B4_5991 -1.7 -2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_2106 -1.7 -2.9 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2105 -1.7 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2048 -1.6 -2.3 hypothetical protein compare
Pf1N1B4_1870 -1.5 -3.1 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3093 -1.5 -2.5 Outer membrane protein H precursor compare
Pf1N1B4_619 -1.5 -2.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_1492 -1.5 -1.7 FIG00959437: hypothetical protein compare
Pf1N1B4_3833 -1.4 -6.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2695 -1.4 -2.0 Rare lipoprotein A precursor compare
Pf1N1B4_2005 -1.4 -2.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1307 -1.4 -2.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1234 -1.3 -3.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4035 -1.3 -2.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1671 -1.3 -2.7 FIG00954962: hypothetical protein compare
Pf1N1B4_3713 -1.3 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3595 -1.3 -2.0 Flagellin protein FlaG compare
Pf1N1B4_4669 -1.3 -1.8 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_2791 -1.2 -2.3 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2807 -1.2 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_2359 -1.2 -2.9 Chemotaxis signal transduction protein compare
Pf1N1B4_3906 -1.2 -2.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4041 -1.2 -3.2 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4853 -1.2 -2.9 Glycosyltransferase compare
Pf1N1B4_644 -1.2 -2.1 Cold shock protein CspC compare
Pf1N1B4_932 -1.2 -1.7 FIG00963370: hypothetical protein compare
Pf1N1B4_4040 -1.2 -2.1 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3130 -1.1 -2.6 Bacteriophage protein GP46 compare
Pf1N1B4_2096 -1.1 -2.4 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_3011 -1.1 -2.2 Tyrosine recombinase XerD compare
Pf1N1B4_5995 -1.1 -1.4 Transporter, MFS superfamily compare
Pf1N1B4_1472 -1.1 -1.6 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_4839 -1.1 -1.8 lipoprotein compare
Pf1N1B4_2114 -1.1 -4.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3627 -1.1 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_4603 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_4851 -1.1 -1.7 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_5659 -1.1 -7.5 NfuA Fe-S protein maturation compare
Pf1N1B4_2674 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_695 -1.1 -2.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_844 -1.1 -3.4 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_1057 -1.0 -2.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3443 -1.0 -2.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_1570 -1.0 -2.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_1691 -1.0 -0.9 hypothetical protein compare
Pf1N1B4_4166 -1.0 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_3768 -1.0 -2.1 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5383 -1.0 -5.8 hypothetical protein compare
Pf1N1B4_1317 -1.0 -1.9 Sensor histidine kinase/response regulator compare
Pf1N1B4_4218 -1.0 -2.5 Multidrug resistance protein A compare
Pf1N1B4_239 -1.0 -2.3 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_5284 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_76 -1.0 -2.1 ATP binding protein compare
Pf1N1B4_5402 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_1511 -0.9 -1.8 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4640 -0.9 -3.7 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_5753 -0.9 -1.7 putative membrane protein compare
Pf1N1B4_2150 -0.9 -1.9 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_3549 -0.9 -1.9 YciL protein compare
Pf1N1B4_2401 -0.9 -1.8 Lipoprotein, putative compare
Pf1N1B4_1617 -0.9 -4.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3143 -0.9 -2.2 RecA protein compare
Pf1N1B4_3073 -0.9 -3.8 probable glucosyl transferase compare
Pf1N1B4_412 -0.9 -1.7 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_769 -0.9 -3.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_5071 -0.9 -2.3 FIG00959535: hypothetical protein compare
Pf1N1B4_1 -0.9 -1.7 Colicin V production protein compare
Pf1N1B4_5109 -0.9 -2.0 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_4946 -0.9 -2.4 putative aminotransferase compare
Pf1N1B4_5618 -0.9 -2.3 Excinuclease ABC subunit C compare
Pf1N1B4_1637 -0.9 -1.8 FIG00954739: hypothetical protein compare
Pf1N1B4_5957 -0.9 -1.5 Arsenical resistance operon repressor compare
Pf1N1B4_4939 -0.9 -1.4 sodium/hydrogen exchanger family protein compare
Pf1N1B4_2856 -0.9 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_6035 -0.9 -2.4 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_5768 -0.9 -1.8 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_1115 -0.9 -5.6 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4957 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_652 -0.8 -5.4 Sensory box histidine kinase compare
Pf1N1B4_5022 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_1126 -0.8 -1.9 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_2458 -0.8 -2.1 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_4429 -0.8 -1.7 No significant database matches compare
Pf1N1B4_2943 -0.8 -2.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_6041 -0.8 -1.6 Carbon storage regulator compare
Pf1N1B4_4765 -0.8 -1.6 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_4039 -0.8 -3.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4285 -0.8 -2.4 Inositol transport system sugar-binding protein compare
Pf1N1B4_4123 -0.8 -1.6 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_526 -0.8 -1.9 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_3864 -0.8 -3.3 Recombination protein RecR compare
Pf1N1B4_3578 -0.8 -2.3 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_2917 -0.8 -4.4 FIG140336: TPR domain protein compare
Pf1N1B4_4531 -0.8 -1.8 FIG01221261: hypothetical protein compare
Pf1N1B4_4396 -0.8 -2.1 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
Pf1N1B4_5737 -0.8 -1.8 Nitrate/nitrite transporter compare
Pf1N1B4_5370 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4802 -0.8 -1.5 polysaccharide deacetylase compare
Pf1N1B4_3631 -0.8 -2.6 Flagellar motor rotation protein MotA compare
Pf1N1B4_3112 -0.8 -2.6 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_350 -0.8 -3.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_152 -0.8 -1.8 ABC transporter, permease protein compare
Pf1N1B4_5095 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_649 -0.8 -2.1 Small-conductance mechanosensitive channel compare
Pf1N1B4_5476 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_4408 -0.8 -1.6 two-component response regulator compare
Pf1N1B4_4038 -0.8 -1.9 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2886 -0.8 -5.4 Paraquat-inducible protein B compare
Pf1N1B4_1579 -0.8 -1.7 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_3467 -0.8 -1.6 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_1568 -0.8 -2.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_3446 -0.8 -1.6 Putative GTPases (G3E family) compare
Pf1N1B4_101 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4644 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_324 -0.8 -1.7 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_5645 -0.8 -1.7 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_5512 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_4051 -0.8 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2940 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_69 -0.8 -1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1191 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4509 -0.8 -1.9 Aldose 1-epimerase compare
Pf1N1B4_493 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_4699 -0.8 -1.9 Multidrug translocase MdfA compare
Pf1N1B4_6036 -0.7 -1.7 FIG00953132: hypothetical protein compare
Pf1N1B4_322 -0.7 -1.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_4997 -0.7 -2.7 Methyl-accepting chemotaxis protein compare
Pf1N1B4_5349 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_974 -0.7 -2.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4918 -0.7 -1.8 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_4741 -0.7 -2.2 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf1N1B4_1350 -0.7 -1.5 GCN5-related N-acetyltransferase compare
Pf1N1B4_3559 -0.7 -5.3 Aromatic amino acid transport protein AroP compare
Pf1N1B4_2620 -0.7 -3.0 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_4621 -0.7 -2.3 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_1159 -0.7 -1.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_4960 -0.7 -1.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_110 -0.7 -2.7 Queuosine biosynthesis QueD, PTPS-I compare
Pf1N1B4_3527 -0.7 -2.6 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit compare
Pf1N1B4_3825 -0.7 -1.9 FIG00959101: hypothetical protein compare
Pf1N1B4_968 -0.7 -2.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2214 -0.7 -2.0 Transcriptional regulator, GntR family compare
Pf1N1B4_515 -0.7 -1.8 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_2224 -0.7 -1.2 FIG00953390: hypothetical protein compare
Pf1N1B4_2885 -0.7 -2.9 Paraquat-inducible protein A compare
Pf1N1B4_4474 -0.7 -1.4 transcription regulator protein compare
Pf1N1B4_1899 -0.7 -2.2 Gfa-like protein compare
Pf1N1B4_2085 -0.7 -1.6 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_2866 -0.7 -1.6 Periplasmic hemin-binding protein compare
Pf1N1B4_131 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_2492 -0.7 -2.0 FIG00954771: hypothetical protein compare
Pf1N1B4_5680 -0.7 -2.2 DNA polymerase-like protein PA0670 compare
Pf1N1B4_1235 -0.7 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_888 -0.7 -2.4 Transglycosylase, Slt family compare
Pf1N1B4_224 -0.7 -1.4 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_1906 -0.7 -2.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3072 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_2757 -0.7 -1.7 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_1403 -0.7 -3.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1528 -0.7 -1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5853 -0.7 -1.9 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_2688 -0.7 -2.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_6038 -0.7 -2.3 FIG00953874: hypothetical protein compare
Pf1N1B4_3330 -0.7 -2.5 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf1N1B4_535 -0.7 -2.3 FIG00953341: hypothetical protein compare
Pf1N1B4_5274 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_2609 -0.7 -4.8 Catalase (EC 1.11.1.6) compare
Pf1N1B4_2384 -0.7 -4.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3531 -0.7 -1.0 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_3812 -0.7 -3.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1619 -0.7 -4.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_5090 -0.7 -1.8 glycosyl transferase, family 2 compare
Pf1N1B4_4611 -0.7 -1.4 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_3334 -0.6 -2.2 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_4296 -0.6 -2.1 Histidine transporter, periplasmic histidine-binding protein compare
Pf1N1B4_1755 -0.6 -2.2 FIG00955799: hypothetical protein compare
Pf1N1B4_5136 -0.6 -3.4 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_5830 -0.6 -1.9 FIG023677: hypothetical protein compare
Pf1N1B4_5760 -0.6 -1.3 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_5769 -0.6 -1.0 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_656 -0.6 -3.6 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_4594 -0.6 -1.2 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_2322 -0.6 -1.2 FIG015547: peptidase, M16 family compare
Pf1N1B4_1721 -0.6 -1.3 DNA-binding heavy metal response regulator compare
Pf1N1B4_5912 -0.6 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5106 -0.6 -2.3 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein compare
Pf1N1B4_1042 -0.6 -1.6 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_4212 -0.6 -1.0 Gfa-like protein compare
Pf1N1B4_554 -0.6 -2.5 Putative threonine efflux protein compare
Pf1N1B4_3871 -0.6 -4.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3325 -0.6 -1.1 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2271 -0.6 -2.4 ATPases of the AAA+ class compare
Pf1N1B4_5149 -0.6 -2.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_193 -0.6 -2.3 Transporter, LysE family compare
Pf1N1B4_2612 -0.6 -1.9 Putative transport protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments