Experiment set3IT044 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_2381 +2.1 15.8 Protein yceI precursor compare
Pf1N1B4_2380 +2.1 15.7 Cytochrome B561 compare
Pf1N1B4_5926 +1.4 10.6 hypothetical protein compare
Pf1N1B4_5925 +1.3 9.5 hypothetical protein compare
Pf1N1B4_623 +1.2 2.6 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_3656 +1.2 2.7 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_5924 +1.1 6.6 hypothetical protein compare
Pf1N1B4_81 +1.1 2.6 Putative sulfate permease compare
Pf1N1B4_3751 +1.1 2.0 FIG00953060: hypothetical protein compare
Pf1N1B4_4487 +1.1 1.9 FIG00955631: hypothetical protein compare
Pf1N1B4_5560 +1.0 2.7 hypothetical protein compare
Pf1N1B4_2635 +1.0 2.6 hypothetical protein compare
Pf1N1B4_5509 +1.0 2.8 hypothetical protein compare
Pf1N1B4_2227 +1.0 2.4 FIG019278: hypothetical protein compare
Pf1N1B4_4830 +1.0 2.6 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_3935 +0.9 2.7 Major facilitator family transporter compare
Pf1N1B4_74 +0.9 1.8 hypothetical protein compare
Pf1N1B4_5927 +0.9 8.4 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3517 +0.9 3.5 hypothetical protein compare
Pf1N1B4_4870 +0.9 1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3889 +0.9 1.7 hypothetical protein compare
Pf1N1B4_4019 +0.9 2.3 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_4551 +0.9 2.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_4740 +0.9 1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2733 +0.9 2.0 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_1212 +0.8 2.7 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_4103 +0.8 1.5 Flagellar synthesis regulator FleN compare
Pf1N1B4_3900 +0.8 2.4 Universal stress protein family COG0589 compare
Pf1N1B4_429 +0.8 2.3 FIG00964214: hypothetical protein compare
Pf1N1B4_2493 +0.8 2.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_1993 +0.8 1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4826 +0.8 2.0 glutamine synthetase family protein compare
Pf1N1B4_3191 +0.8 1.8 FIG00953505: hypothetical protein compare
Pf1N1B4_904 +0.8 2.0 DNA-binding protein HU-beta compare
Pf1N1B4_3605 +0.8 1.6 Flagellar motor switch protein FliG compare
Pf1N1B4_4271 +0.8 2.5 Hydrogen cyanide synthase HcnC / Opine oxidase subunit B compare
Pf1N1B4_4648 +0.8 1.9 transcriptional regulator, MerR family compare
Pf1N1B4_108 +0.8 1.9 FIG00954456: hypothetical protein compare
Pf1N1B4_3119 +0.8 1.3 Holin compare
Pf1N1B4_662 +0.8 2.3 FIG00955875: hypothetical protein compare
Pf1N1B4_4220 +0.8 1.9 Maebl compare
Pf1N1B4_3504 +0.8 2.7 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_2090 +0.7 2.7 FIG00959590: hypothetical protein compare
Pf1N1B4_441 +0.7 2.0 hypothetical protein compare
Pf1N1B4_4107 +0.7 1.7 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_5430 +0.7 2.4 hypothetical protein compare
Pf1N1B4_4132 +0.7 1.3 Mobile element protein compare
Pf1N1B4_4435 +0.7 2.6 Inner membrane protein compare
Pf1N1B4_4553 +0.7 1.9 FIG00959354: hypothetical protein compare
Pf1N1B4_5348 +0.7 2.4 hypothetical protein compare
Pf1N1B4_359 +0.7 1.9 GGDEF domain protein compare
Pf1N1B4_1348 +0.7 2.2 Urease accessory protein UreD compare
Pf1N1B4_825 +0.7 1.8 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf1N1B4_1358 +0.7 2.4 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_234 +0.7 2.3 hypothetical protein compare
Pf1N1B4_5745 +0.7 1.3 FIG139928: Putative protease compare
Pf1N1B4_3005 +0.7 5.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_5302 +0.7 1.9 hypothetical protein compare
Pf1N1B4_608 +0.7 1.3 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_2736 +0.7 1.9 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4582 +0.7 1.6 hypothetical protein compare
Pf1N1B4_320 +0.7 2.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_3098 +0.7 2.2 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_2853 +0.7 1.4 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4337 +0.7 1.5 Transcriptional regulator compare
Pf1N1B4_4961 +0.7 2.1 FIG00441227: hypothetical protein compare
Pf1N1B4_756 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4893 +0.6 2.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf1N1B4_5093 +0.6 2.0 Endo-beta-1,3-glucanase compare
Pf1N1B4_4494 +0.6 1.8 hypothetical protein compare
Pf1N1B4_34 +0.6 1.4 Xanthine permease compare
Pf1N1B4_4358 +0.6 1.5 Acetyltransferase, GNAT family compare
Pf1N1B4_1487 +0.6 3.5 Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter compare
Pf1N1B4_5801 +0.6 1.9 hypothetical protein compare
Pf1N1B4_2980 +0.6 2.0 Acetylornithine aminotransferase (EC 2.6.1.11) compare
Pf1N1B4_3351 +0.6 1.9 FIG00954302: hypothetical protein compare
Pf1N1B4_4717 +0.6 1.2 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_2684 +0.6 1.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_3497 +0.6 3.0 Heat shock protein compare
Pf1N1B4_4102 +0.6 2.0 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_1035 +0.6 2.5 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
Pf1N1B4_4336 +0.6 1.7 FMN-dependent NADH-azoreductase compare
Pf1N1B4_1517 +0.6 2.1 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf1N1B4_5812 +0.6 1.9 FIG00955248: hypothetical protein compare
Pf1N1B4_2987 +0.6 2.2 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_4823 +0.6 2.0 Paraquat-inducible protein A compare
Pf1N1B4_3297 +0.6 2.4 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3588 +0.6 1.2 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_5505 +0.6 2.0 hypothetical protein compare
Pf1N1B4_4320 +0.6 1.8 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_3830 +0.6 2.3 CrfX protein compare
Pf1N1B4_2975 +0.6 1.2 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_3169 +0.6 2.1 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf1N1B4_80 +0.6 2.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_1135 +0.6 1.1 FIG00960055: hypothetical protein compare
Pf1N1B4_1312 +0.6 2.1 hypothetical protein compare
Pf1N1B4_598 +0.6 2.4 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_165 +0.6 1.3 FIG00638667: hypothetical protein compare
Pf1N1B4_2163 +0.6 1.2 hypothetical protein compare
Pf1N1B4_5073 +0.6 1.8 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_138 +0.6 1.3 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_3368 +0.6 1.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_5507 +0.6 1.3 hypothetical protein compare
Pf1N1B4_761 +0.6 1.6 FIG00954879: hypothetical protein compare
Pf1N1B4_3148 +0.6 2.4 FIG074102: hypothetical protein compare
Pf1N1B4_5288 +0.6 2.0 hypothetical protein compare
Pf1N1B4_5604 +0.6 1.5 Permeases of the major facilitator superfamily compare
Pf1N1B4_4208 +0.6 1.1 organophosphate pesticide hydrolase compare
Pf1N1B4_2637 +0.6 2.9 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf1N1B4_3861 +0.6 2.4 FIG00953368: hypothetical protein compare
Pf1N1B4_4481 +0.6 1.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_4119 +0.6 1.7 dioxygenase compare
Pf1N1B4_5644 +0.6 2.0 amino acid ABC transporter, permease protein compare
Pf1N1B4_676 +0.5 1.8 FIG00953991: hypothetical protein compare
Pf1N1B4_3312 +0.5 2.1 Tricarboxylate transport protein TctB compare
Pf1N1B4_4723 +0.5 1.6 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_3241 +0.5 1.2 hypothetical protein compare
Pf1N1B4_3426 +0.5 2.6 McrBC 5-methylcytosine restriction system component compare
Pf1N1B4_206 +0.5 2.6 hypothetical protein compare
Pf1N1B4_3525 +0.5 1.0 hydrolase, alpha/beta fold family compare
Pf1N1B4_751 +0.5 1.1 hypothetical protein compare
Pf1N1B4_1232 +0.5 2.4 Inner membrane protein YfiN compare
Pf1N1B4_5275 +0.5 0.6 hypothetical protein compare
Pf1N1B4_669 +0.5 1.8 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf1N1B4_3493 +0.5 2.1 FIG00956341: hypothetical protein compare
Pf1N1B4_4969 +0.5 1.2 FIG00956189: hypothetical protein compare
Pf1N1B4_603 +0.5 1.8 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_5294 +0.5 1.0 hypothetical protein compare
Pf1N1B4_1263 +0.5 1.5 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_5451 +0.5 1.6 hypothetical protein compare
Pf1N1B4_4975 +0.5 1.6 hypothetical protein compare
Pf1N1B4_4112 +0.5 2.4 hypothetical protein compare
Pf1N1B4_4462 +0.5 1.3 LysR family transcriptional regulator YbhD compare
Pf1N1B4_5342 +0.5 0.7 hypothetical protein compare
Pf1N1B4_3898 +0.5 3.2 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) compare
Pf1N1B4_4759 +0.5 1.1 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_3111 +0.5 0.9 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_5542 +0.5 1.2 hypothetical protein compare
Pf1N1B4_1422 +0.5 1.7 hypothetical protein compare
Pf1N1B4_3160 +0.5 2.1 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase compare
Pf1N1B4_5023 +0.5 1.8 Alkylated DNA repair protein AlkB compare
Pf1N1B4_5239 +0.5 1.6 hypothetical protein compare
Pf1N1B4_4473 +0.5 1.0 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5135 +0.5 1.7 Transcriptional regulator, TetR family compare
Pf1N1B4_5591 +0.5 1.2 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_3529 +0.5 2.2 Membrane bound c-di-GMP receptor LapD compare
Pf1N1B4_3183 +0.5 2.5 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_4264 +0.5 1.9 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) compare
Pf1N1B4_1994 +0.5 1.6 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf1N1B4_617 +0.5 1.1 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_4000 +0.5 1.7 Outer membrane component of tripartite multidrug resistance system compare
Pf1N1B4_4778 +0.5 1.9 NADH pyrophosphatase (EC 3.6.1.22) compare
Pf1N1B4_5949 +0.5 1.1 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_5359 +0.5 1.6 hypothetical protein compare
Pf1N1B4_2545 +0.5 4.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1475 +0.5 2.6 FIG00962376: hypothetical protein compare
Pf1N1B4_298 +0.5 1.5 Transcription elongation factor GreB compare
Pf1N1B4_3622 +0.5 2.8 Flagellar biosynthesis protein FlhA compare
Pf1N1B4_1310 +0.5 1.7 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_786 +0.5 2.1 L-lysine permease compare
Pf1N1B4_4560 +0.5 1.1 Transcriptional regulator, MerR family compare
Pf1N1B4_476 +0.5 1.6 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_54 +0.5 2.3 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_3265 +0.5 2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_1888 +0.5 2.1 Glutamate-aspartate carrier protein compare
Pf1N1B4_1593 +0.5 0.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3744 +0.5 1.9 ABC transporter, ATP-binding protein compare
Pf1N1B4_3907 +0.5 1.5 FIG00953287: hypothetical protein compare
Pf1N1B4_4157 +0.5 2.3 Probable signal peptide protein compare
Pf1N1B4_1118 +0.5 1.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4489 +0.5 1.6 Transcriptional regulator, LuxR family compare
Pf1N1B4_516 +0.5 1.5 Sensor histidine kinase compare
Pf1N1B4_3954 +0.5 2.4 Hydrolase, carbon-nitrogen family compare
Pf1N1B4_2373 +0.5 2.2 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_4423 +0.5 1.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_1386 +0.5 1.8 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Pf1N1B4_401 +0.5 1.7 GCN5-related N-acetyltransferase (EC 2.3.1.57) compare
Pf1N1B4_3354 +0.5 2.1 FIG00954793: hypothetical protein compare
Pf1N1B4_3962 +0.5 2.1 Glycerol-3-phosphate transporter compare
Pf1N1B4_3956 +0.5 2.0 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf1N1B4_5571 +0.5 2.1 hypothetical protein compare
Pf1N1B4_2712 +0.5 1.7 tRNA-i(6)A37 methylthiotransferase compare
Pf1N1B4_3629 +0.5 1.9 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf1N1B4_2937 +0.5 1.8 FIG00953775: hypothetical protein compare
Pf1N1B4_4470 +0.5 1.4 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_3303 +0.5 1.5 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf1N1B4_4825 +0.5 2.1 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_2154 +0.5 1.2 hypothetical protein compare
Pf1N1B4_1485 +0.5 1.8 FIG00963848: hypothetical protein compare
Pf1N1B4_1246 +0.5 0.9 FIG00954047: hypothetical protein compare
Pf1N1B4_1331 +0.5 1.7 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_2646 +0.5 1.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3636 +0.5 1.3 FIG00953562: hypothetical protein compare
Pf1N1B4_571 +0.5 2.3 FIG00954271: hypothetical protein compare
Pf1N1B4_4590 +0.5 1.3 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_175 +0.5 1.0 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_814 +0.5 0.7 Transcriptional regulator, PadR family compare
Pf1N1B4_2947 +0.5 2.1 Restriction endonuclease compare
Pf1N1B4_3304 +0.5 2.0 Urea carboxylase-related ABC transporter, ATPase protein compare
Pf1N1B4_2547 +0.5 1.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments