Experiment set3IT044 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -5.4 -15.3 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.4 -14.8 S41 family peptidase compare
PFLU_RS01895 -4.5 -6.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02490 -4.4 -12.6 phosphoserine phosphatase SerB compare
PFLU_RS01605 -4.2 -10.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28695 -4.2 -8.5 phosphoglycerate dehydrogenase compare
PFLU_RS27365 -4.1 -11.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -4.0 -12.0 phosphoribosylanthranilate isomerase compare
PFLU_RS24125 -4.0 -6.1 cold-shock protein compare
PFLU_RS01900 -4.0 -8.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS07650 -3.9 -17.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS28655 -3.9 -14.8 HAD family hydrolase compare
PFLU_RS28535 -3.8 -17.3 dihydroxy-acid dehydratase compare
PFLU_RS27370 -3.8 -13.3 anthranilate phosphoribosyltransferase compare
PFLU_RS00180 -3.8 -8.1 tryptophan synthase subunit beta compare
PFLU_RS03770 -3.7 -15.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS29725 -3.7 -16.1 phosphate regulon transcriptional regulatory protein PhoB compare
PFLU_RS01625 -3.7 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01620 -3.7 -10.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS12975 -3.6 -6.4 DUF934 domain-containing protein compare
PFLU_RS22740 -3.6 -4.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS18505 -3.6 -11.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS22595 -3.6 -3.4 OmpA family protein compare
PFLU_RS26545 -3.6 -13.0 sel1 repeat family protein compare
PFLU_RS21060 -3.5 -6.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS12980 -3.5 -10.7 nitrite/sulfite reductase compare
PFLU_RS00175 -3.5 -8.4 tryptophan synthase subunit alpha compare
PFLU_RS25735 -3.5 -6.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25640 -3.4 -13.7 ketol-acid reductoisomerase compare
PFLU_RS29515 -3.4 -14.6 RidA family protein compare
PFLU_RS04470 -3.4 -12.9 histidinol dehydrogenase compare
PFLU_RS02590 -3.3 -9.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28165 -3.3 -13.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04465 -3.3 -10.9 ATP phosphoribosyltransferase compare
PFLU_RS25755 -3.3 -4.5 pantoate--beta-alanine ligase compare
PFLU_RS29095 -3.3 -24.4 polyphosphate kinase 1 compare
PFLU_RS28965 -3.3 -12.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27620 -3.3 -21.0 acyl-CoA dehydrogenase compare
PFLU_RS22095 -3.2 -20.9 GTP diphosphokinase compare
PFLU_RS23065 -3.1 -11.8 phosphate acyltransferase PlsX compare
PFLU_RS01610 -3.1 -13.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS03970 -3.1 -11.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS09055 -3.1 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01485 -3.0 -16.8 cellulase compare
PFLU_RS29730 -3.0 -12.8 phosphate regulon sensor histidine kinase PhoR compare
PFLU_RS07160 -2.9 -16.5 response regulator conserved
PFLU_RS24485 -2.9 -12.5 hypothetical protein compare
PFLU_RS22105 -2.9 -6.0 cysteine synthase CysM compare
PFLU_RS07165 -2.9 -16.3 sensor histidine kinase conserved
PFLU_RS15005 -2.8 -2.9 hypothetical protein compare
PFLU_RS23680 -2.8 -17.9 long-chain fatty acid--CoA ligase compare
PFLU_RS20575 -2.8 -7.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS26770 -2.8 -15.0 DedA family protein compare
PFLU_RS23305 -2.8 -12.3 arginine N-succinyltransferase compare
PFLU_RS06055 -2.7 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08410 -2.7 -8.3 HTH-type transcriptional regulator CysB compare
PFLU_RS20580 -2.7 -14.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS08505 -2.7 -8.8 protease HtpX compare
PFLU_RS04070 -2.7 -6.3 peptide chain release factor 3 compare
PFLU_RS20565 -2.7 -14.8 3-isopropylmalate dehydrogenase compare
PFLU_RS28390 -2.6 -10.8 methionine biosynthesis protein MetW compare
PFLU_RS03765 -2.6 -11.5 sulfate adenylyltransferase subunit CysD compare
PFLU_RS20515 -2.6 -3.6 amidophosphoribosyltransferase compare
PFLU_RS25730 -2.6 -17.7 PAS domain S-box protein compare
PFLU_RS13540 -2.6 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24025 -2.6 -12.3 quinolinate synthase NadA compare
PFLU_RS28385 -2.6 -14.3 homoserine O-acetyltransferase compare
PFLU_RS22070 -2.5 -4.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS24765 -2.5 -18.6 2-isopropylmalate synthase compare
PFLU_RS02365 -2.4 -13.5 glycosyltransferase compare
PFLU_RS24095 -2.4 -2.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS25360 -2.4 -8.6 glutamate 5-kinase compare
PFLU_RS04435 -2.4 -7.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS05250 -2.4 -5.5 elongation factor 4 compare
PFLU_RS20510 -2.4 -13.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS26640 -2.3 -12.3 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS07785 -2.3 -12.0 VacJ family lipoprotein compare
PFLU_RS25750 -2.3 -7.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS00415 -2.2 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS01965 -2.2 -2.1 ATP-dependent protease subunit HslV compare
PFLU_RS04445 -2.2 -7.2 ABC transporter substrate-binding protein compare
PFLU_RS18620 -2.1 -4.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS28645 -2.1 -12.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS17545 -2.1 -2.0 DUF465 domain-containing protein compare
PFLU_RS21300 -2.1 -6.8 cysteine hydrolase compare
PFLU_RS08155 -2.0 -4.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS26905 -2.0 -8.5 transcriptional regulator NrdR compare
PFLU_RS18530 -2.0 -4.8 DNA translocase FtsK compare
PFLU_RS24085 -2.0 -4.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS25740 -2.0 -5.1 polynucleotide adenylyltransferase PcnB compare
PFLU_RS14805 -2.0 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS20955 -2.0 -2.9 DUF1028 domain-containing protein compare
PFLU_RS23070 -2.0 -1.8 50S ribosomal protein L32 compare
PFLU_RS28650 -2.0 -7.0 RNA pyrophosphohydrolase compare
PFLU_RS01320 -2.0 -9.4 phosphoenolpyruvate carboxykinase compare
PFLU_RS00510 -2.0 -14.1 CitMHS family transporter conserved
PFLU_RS13350 -2.0 -2.7 ParD-like family protein compare
PFLU_RS27910 -2.0 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS23310 -1.9 -9.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS13715 -1.9 -2.3 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS21495 -1.9 -3.9 TlpA family protein disulfide reductase compare
PFLU_RS25225 -1.9 -8.8 disulfide bond formation protein B compare
PFLU_RS04440 -1.9 -9.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS01960 -1.9 -1.8 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS18625 -1.9 -6.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS03610 -1.9 -6.5 redox-regulated ATPase YchF compare
PFLU_RS08165 -1.9 -2.5 acyl carrier protein compare
PFLU_RS19165 -1.9 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04430 -1.9 -8.0 ATP-binding cassette domain-containing protein compare
PFLU_RS18655 -1.9 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS30165 -1.8 -8.9 ParA family protein compare
PFLU_RS18615 -1.8 -3.0 NADH-quinone oxidoreductase subunit A compare
PFLU_RS09980 -1.8 -13.2 peptidase S41 compare
PFLU_RS00310 -1.8 -1.8 twin transmembrane helix small protein compare
PFLU_RS09500 -1.8 -2.1 hypothetical protein compare
PFLU_RS08160 -1.8 -7.5 sugar transferase compare
PFLU_RS11830 -1.8 -4.0 hypothetical protein compare
PFLU_RS04325 -1.8 -12.6 ribonuclease G compare
PFLU_RS20690 -1.7 -3.1 hypothetical protein compare
PFLU_RS02370 -1.7 -9.0 glycosyltransferase compare
PFLU_RS06320 -1.7 -2.6 OmpH family outer membrane protein compare
PFLU_RS25715 -1.7 -9.2 RNA polymerase-binding protein DksA compare
PFLU_RS02460 -1.6 -9.5 alpha/beta fold hydrolase compare
PFLU_RS14550 -1.6 -7.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS06650 -1.6 -3.0 DUF2288 domain-containing protein compare
PFLU_RS07150 -1.6 -9.7 tripartite tricarboxylate transporter substrate binding protein conserved
PFLU_RS18640 -1.6 -4.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS23185 -1.6 -10.1 protein-glutamate O-methyltransferase CheR compare
PFLU_RS19170 -1.6 -3.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18645 -1.6 -2.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS17060 -1.5 -2.0 monooxygenase compare
PFLU_RS20660 -1.5 -7.5 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS24670 -1.5 -2.7 HigA family addiction module antidote protein compare
PFLU_RS27380 -1.5 -9.2 anthranilate synthase component I compare
PFLU_RS28310 -1.4 -1.8 response regulator compare
PFLU_RS13795 -1.4 -2.3 hypothetical protein compare
PFLU_RS20015 -1.4 -3.2 transporter compare
PFLU_RS22725 -1.4 -3.0 transcriptional regulator compare
PFLU_RS14440 -1.4 -1.5 hypothetical protein compare
PFLU_RS23920 -1.4 -2.1 septation protein A compare
PFLU_RS24785 -1.4 -8.0 outer membrane protein assembly factor BamB compare
PFLU_RS29275 -1.4 -5.9 DUF484 family protein compare
PFLU_RS21965 -1.4 -9.9 transporter compare
PFLU_RS18635 -1.4 -2.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS06555 -1.4 -7.6 OmpA family protein compare
PFLU_RS01615 -1.4 -3.0 DUF2164 domain-containing protein compare
PFLU_RS18665 -1.4 -2.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS08665 -1.4 -1.5 cytochrome c maturation protein CcmE compare
PFLU_RS02970 -1.3 -5.1 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS26735 -1.3 -7.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS26565 -1.3 -1.2 rRNA maturation RNase YbeY compare
PFLU_RS11475 -1.3 -1.3 histidine kinase compare
PFLU_RS21645 -1.3 -7.3 chemotaxis protein CheA compare
PFLU_RS19175 -1.3 -6.7 trigger factor compare
PFLU_RS04715 -1.3 -4.4 D-alanine--D-alanine ligase compare
PFLU_RS26020 -1.3 -8.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS08675 -1.3 -1.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS07655 -1.3 -4.5 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS22600 -1.3 -1.6 RNA polymerase sigma factor SigX compare
PFLU_RS18670 -1.3 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS28725 -1.3 -8.5 DUF2059 domain-containing protein compare
PFLU_RS08670 -1.3 -1.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04385 -1.3 -7.0 RNase adapter RapZ compare
PFLU_RS11980 -1.3 -5.0 precorrin-6A synthase (deacetylating) compare
PFLU_RS31830 -1.3 -1.0 hypothetical protein compare
PFLU_RS01285 -1.3 -1.4 HAMP domain-containing protein compare
PFLU_RS29490 -1.2 -6.6 ribonuclease PH compare
PFLU_RS04150 -1.2 -4.1 DUF1043 family protein compare
PFLU_RS13000 -1.2 -9.5 methionine synthase compare
PFLU_RS29090 -1.2 -6.3 exopolyphosphatase compare
PFLU_RS04660 -1.2 -4.6 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS14820 -1.2 -3.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS28325 -1.2 -5.9 energy transducer TonB compare
PFLU_RS29900 -1.2 -7.6 DNA helicase II compare
PFLU_RS05540 -1.2 -8.0 LysR family transcriptional regulator compare
PFLU_RS31520 -1.2 -4.1 TonB-dependent receptor compare
PFLU_RS07495 -1.2 -1.3 DUF2892 domain-containing protein compare
PFLU_RS27475 -1.2 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS24090 -1.2 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS02975 -1.2 -5.7 precorrin-3B synthase compare
PFLU_RS05885 -1.2 -4.1 recombinase RecA compare
PFLU_RS04475 -1.2 -6.8 histidinol-phosphate transaminase compare
PFLU_RS24710 -1.2 -5.6 alpha,alpha-phosphotrehalase compare
PFLU_RS20285 -1.2 -4.8 MerR family transcriptional regulator compare
PFLU_RS13045 -1.2 -4.4 AAA domain-containing protein compare
PFLU_RS29065 -1.1 -1.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS07275 -1.1 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04650 -1.1 -9.0 ABC transporter substrate-binding protein compare
PFLU_RS23240 -1.1 -7.5 magnesium transporter compare
PFLU_RS04165 -1.1 -3.8 cell division protein ZapE compare
PFLU_RS28850 -1.1 -9.0 OprD family porin compare
PFLU_RS22000 -1.1 -5.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS30160 -1.1 -2.1 ParB/RepB/Spo0J family partition protein compare
PFLU_RS01650 -1.1 -5.7 murein hydrolase activator EnvC compare
PFLU_RS23730 -1.1 -7.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS29875 -1.1 -7.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS02310 -1.1 -4.1 LPS kinase compare
PFLU_RS27375 -1.1 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS01685 -1.1 -3.5 nitrogen regulation protein NR(I) compare
PFLU_RS25585 -1.0 -1.6 exodeoxyribonuclease V subunit alpha compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Trisodium citrate dihydrate across organisms