Experiment set3IT044 for Methanococcus maripaludis JJ

Compare to:

formate McAA thiamine dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.6 -23.9 hypothetical protein compare
MMJJ_RS03895 -5.6 -5.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS06625 -5.4 -2.7 pyruvate synthase subunit PorB compare
MMJJ_RS05445 -5.2 -2.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS00210 -5.0 -2.8 DUF530 family protein compare
MMJJ_RS06750 -5.0 -2.8 homoaconitase large subunit compare
MMJJ_RS05450 -4.9 -18.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06240 -4.8 -4.1 dihydropteroate synthase-like protein compare
MMJJ_RS03580 -4.8 -4.6 TIGR00303 family protein compare
MMJJ_RS06910 -4.8 -2.9 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS00570 -4.8 -2.7 ribonuclease P compare
MMJJ_RS07380 -4.7 -12.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06860 -4.7 -5.3 hypothetical protein compare
MMJJ_RS06490 -4.7 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS04200 -4.5 -8.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05650 -4.4 -4.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06250 -4.3 -2.9 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS07705 -4.2 -4.4 GTP-binding protein EngB compare
MMJJ_RS06510 -4.2 -3.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS06695 -4.2 -4.5 amidohydrolase compare
MMJJ_RS01935 -4.2 -5.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS00370 -4.1 -2.1 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS09375 -4.1 -2.5 hypothetical protein compare
MMJJ_RS07785 -4.1 -3.8 fumarate reductase subunit A compare
MMJJ_RS05620 -4.0 -4.8 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS01750 -4.0 -3.5 ferrous iron transport protein A compare
MMJJ_RS08330 -4.0 -4.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS02090 -4.0 -6.9 tyramine--L-glutamate ligase compare
MMJJ_RS07410 -4.0 -5.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS01600 -3.9 -4.3 radical SAM protein compare
MMJJ_RS07665 -3.8 -23.9 formate dehydrogenase subunit alpha compare
MMJJ_RS03270 -3.8 -3.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05610 -3.8 -6.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS05575 -3.8 -5.5 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03785 -3.8 -3.6 hypothetical protein compare
MMJJ_RS07470 -3.8 -2.5 50S ribosome-binding GTPase compare
MMJJ_RS03875 -3.7 -4.6 CBS domain-containing protein compare
MMJJ_RS04975 -3.7 -2.7 glycosyltransferase family 4 protein compare
MMJJ_RS05535 -3.7 -14.8 hypothetical protein compare
MMJJ_RS07670 -3.7 -20.5 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS03840 -3.6 -5.5 DHH family phosphoesterase compare
MMJJ_RS08020 -3.6 -9.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00580 -3.6 -2.4 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05935 -3.6 -3.0 Era-like GTP-binding protein compare
MMJJ_RS06390 -3.6 -2.4 NADPH-dependent F420 reductase compare
MMJJ_RS05330 -3.6 -3.1 DNA polymerase II large subunit compare
MMJJ_RS01415 -3.6 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS06040 -3.5 -5.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04485 -3.5 -13.2 riboflavin synthase compare
MMJJ_RS03660 -3.5 -5.0 DUF447 family protein compare
MMJJ_RS08250 -3.5 -8.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS03670 -3.5 -5.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03125 -3.5 -5.5 GMC oxidoreductase compare
MMJJ_RS05415 -3.4 -1.9 hypothetical protein compare
MMJJ_RS06155 -3.4 -6.2 phosphatidylglycerophosphatase A compare
MMJJ_RS02920 -3.4 -3.0 30S ribosomal protein S27ae compare
MMJJ_RS03110 -3.4 -5.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08625 -3.4 -9.1 magnesium/cobalt transporter CorA compare
MMJJ_RS03820 -3.3 -5.2 hydrogenase formation protein HypD compare
MMJJ_RS02040 -3.3 -2.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06705 -3.3 -6.5 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS02045 -3.2 -4.0 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07655 -3.2 -15.4 hypothetical protein compare
MMJJ_RS00270 -3.2 -4.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03190 -3.2 -3.6 phosphopyruvate hydratase compare
MMJJ_RS08340 -3.2 -5.6 archaeoflavoprotein AfpA compare
MMJJ_RS07000 -3.2 -2.5 TrkH family potassium uptake protein compare
MMJJ_RS05930 -3.2 -2.5 cell division protein SepF compare
MMJJ_RS00520 -3.2 -7.0 PDGLE domain-containing protein compare
MMJJ_RS03760 -3.2 -4.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS08320 -3.1 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06915 -3.1 -14.1 helix-turn-helix domain-containing protein compare
MMJJ_RS01755 -3.1 -3.4 ferrous iron transport protein B compare
MMJJ_RS05950 -3.1 -4.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS08055 -3.1 -7.8 methanogenesis marker 14 protein compare
MMJJ_RS05065 -3.1 -5.4 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06875 -3.1 -3.7 hypothetical protein compare
MMJJ_RS03615 -3.1 -3.7 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04790 -3.1 -5.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS07950 -3.1 -3.6 4Fe-4S binding protein compare
MMJJ_RS02935 -3.1 -4.3 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS04155 -3.0 -6.9 hypothetical protein compare
MMJJ_RS01565 -3.0 -7.5 TIGR00267 family protein compare
MMJJ_RS03055 -3.0 -3.6 hypothetical protein compare
MMJJ_RS04995 -3.0 -7.7 Tfx family DNA-binding protein compare
MMJJ_RS04475 -3.0 -4.3 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06725 -3.0 -14.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06255 -3.0 -8.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06840 -3.0 -4.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05490 -3.0 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08080 -2.9 -10.0 TIGR00300 family protein compare
MMJJ_RS04800 -2.9 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08005 -2.9 -16.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS00195 -2.9 -4.5 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS00045 -2.8 -14.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS05225 -2.8 -2.0 Gar1/Naf1 family protein compare
MMJJ_RS05070 -2.8 -2.7 DNA primase catalytic subunit PriS compare
MMJJ_RS00070 -2.8 -5.3 CooT family nickel-binding protein compare
MMJJ_RS08000 -2.8 -10.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS03295 -2.8 -16.9 PHP domain-containing protein compare
MMJJ_RS07350 -2.8 -4.0 4Fe-4S binding protein compare
MMJJ_RS07945 -2.8 -3.7 4Fe-4S binding protein compare
MMJJ_RS03060 -2.8 -3.9 methanogenesis marker 7 protein compare
MMJJ_RS08095 -2.8 -5.8 cobyric acid synthase CobQ compare
MMJJ_RS06375 -2.7 -5.3 UbiX family flavin prenyltransferase compare
MMJJ_RS02275 -2.7 -5.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS01360 -2.7 -3.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS00040 -2.7 -10.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS04675 -2.7 -6.7 thiamine pyrophosphate-binding protein compare
MMJJ_RS04685 -2.7 -9.4 carbamoyltransferase HypF compare
MMJJ_RS03005 -2.7 -4.8 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03830 -2.7 -11.0 CBS domain-containing protein compare
MMJJ_RS00080 -2.7 -13.7 DUF166 domain-containing protein compare
MMJJ_RS00050 -2.7 -12.2 AAA family ATPase compare
MMJJ_RS06110 -2.6 -3.0 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS07275 -2.6 -4.1 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS00275 -2.6 -2.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00075 -2.6 -11.4 AAA family ATPase compare
MMJJ_RS06180 -2.6 -3.6 tryptophan--tRNA ligase compare
MMJJ_RS06905 -2.6 -2.7 hypothetical protein compare
MMJJ_RS07660 -2.6 -10.2 carbonic anhydrase compare
MMJJ_RS08065 -2.6 -3.3 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS05260 -2.6 -5.8 ATP-grasp domain-containing protein compare
MMJJ_RS06185 -2.6 -6.4 cobalamin biosynthesis protein compare
MMJJ_RS03635 -2.6 -4.0 methionine--tRNA ligase compare
MMJJ_RS06215 -2.6 -5.4 agmatinase compare
MMJJ_RS00060 -2.6 -15.8 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS01865 -2.6 -5.2 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS06380 -2.6 -4.9 signal recognition particle protein Srp54 compare
MMJJ_RS05810 -2.6 -8.6 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00035 -2.5 -16.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS04730 -2.5 -3.6 tyrosine decarboxylase MfnA compare
MMJJ_RS04655 -2.5 -5.5 FAD-dependent oxidoreductase compare
MMJJ_RS04595 -2.5 -4.2 hypothetical protein compare
MMJJ_RS05995 -2.5 -3.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS03620 -2.5 -6.3 DUF2097 domain-containing protein compare
MMJJ_RS03630 -2.5 -11.5 AMP phosphorylase compare
MMJJ_RS00530 -2.5 -12.1 cobalt ECF transporter T component CbiQ compare
MMJJ_RS06730 -2.5 -6.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS07995 -2.4 -7.7 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS05655 -2.4 -7.0 HisA/HisF family protein compare
MMJJ_RS00055 -2.4 -9.0 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS03065 -2.4 -10.7 CBS domain-containing protein compare
MMJJ_RS01690 -2.4 -3.9 methanogenesis marker 12 protein compare
MMJJ_RS07425 -2.4 -10.9 MBL fold metallo-hydrolase compare
MMJJ_RS03800 -2.4 -10.9 aldolase compare
MMJJ_RS03865 -2.4 -2.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08660 -2.4 -3.3 acetylornithine transaminase compare
MMJJ_RS00425 -2.4 -3.9 hypothetical protein compare
MMJJ_RS06225 -2.4 -2.7 adenosylmethionine decarboxylase compare
MMJJ_RS05765 -2.4 -1.2 flagellar protein E compare
MMJJ_RS04520 -2.4 -5.6 coenzyme F430 synthase compare
MMJJ_RS06220 -2.4 -5.7 polyamine aminopropyltransferase compare
MMJJ_RS01345 -2.3 -4.7 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05190 -2.3 -7.1 gamma carbonic anhydrase family protein compare
MMJJ_RS03150 -2.3 -6.4 2-phospho-L-lactate transferase compare
MMJJ_RS00125 -2.3 -2.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS08620 -2.3 -3.1 DUF373 family protein compare
MMJJ_RS00205 -2.3 -5.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00065 -2.3 -11.6 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06930 -2.3 -3.0 type II methionyl aminopeptidase compare
MMJJ_RS07650 -2.3 -16.5 formate/nitrite transporter family protein compare
MMJJ_RS07725 -2.3 -8.3 DNA primase DnaG compare
MMJJ_RS07635 -2.3 -13.2 response regulator transcription factor compare
MMJJ_RS07640 -2.3 -17.6 cache domain-containing protein compare
MMJJ_RS07155 -2.3 -9.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03200 -2.3 -2.3 uroporphyrinogen-III synthase compare
MMJJ_RS07345 -2.2 -5.6 homocysteine biosynthesis protein compare
MMJJ_RS06835 -2.2 -10.3 4Fe-4S binding protein compare
MMJJ_RS07370 -2.2 -3.9 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS00475 -2.2 -2.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06485 -2.2 -3.5 phosphoglycerate kinase compare
MMJJ_RS05375 -2.2 -13.8 radical SAM protein compare
MMJJ_RS07840 -2.1 -4.8 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS05360 -2.1 -6.5 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS00560 -2.1 -3.7 homoisocitrate dehydrogenase compare
MMJJ_RS07245 -2.1 -3.8 amidohydrolase family protein compare
MMJJ_RS01410 -2.1 -5.7 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS06170 -2.1 -8.1 hypothetical protein compare
MMJJ_RS01405 -2.1 -1.2 proline--tRNA ligase compare
MMJJ_RS09190 -2.1 -2.1 tryptophan synthase subunit beta compare
MMJJ_RS03160 -2.1 -13.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07360 -2.1 -1.7 TIGR00269 family protein compare
MMJJ_RS02055 -2.0 -12.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS01475 -2.0 -1.9 signal recognition particle-docking protein FtsY compare
MMJJ_RS00355 -2.0 -3.3 ribonuclease P protein component 4 compare
MMJJ_RS00265 -2.0 -6.3 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS00515 -2.0 -10.5 cobalt transporter CbiM compare
MMJJ_RS08840 -2.0 -4.1 calcium/sodium antiporter compare
MMJJ_RS06785 -2.0 -7.6 RNA ligase partner protein compare
MMJJ_RS04970 -2.0 -1.9 DUF655 domain-containing protein compare
MMJJ_RS08325 -2.0 -2.2 glycosyltransferase family 2 protein compare
MMJJ_RS06270 -1.9 -7.4 dethiobiotin synthase compare
MMJJ_RS06050 -1.9 -9.3 molybdopterin molybdotransferase MoeA compare
MMJJ_RS04980 -1.9 -4.4 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06010 -1.9 -5.5 hypothetical protein compare
MMJJ_RS06175 -1.9 -2.3 DUF1743 domain-containing protein compare
MMJJ_RS03815 -1.9 -1.8 nascent polypeptide-associated complex protein compare
MMJJ_RS06805 -1.9 -3.0 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06760 -1.8 -4.2 Ni-sirohydrochlorin a,c-diamide synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments