Experiment set3IT044 for Methanococcus maripaludis JJ

Compare to:

formate McAA thiamine dropout

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.7 12.3 hypothetical protein compare
MMJJ_RS04005 +1.3 9.4 acetate--CoA ligase family protein compare
MMJJ_RS08830 +1.0 3.2 hypothetical protein compare
MMJJ_RS05685 +0.9 6.1 class III signal peptide-containing protein compare
MMJJ_RS08935 +0.8 0.9 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS07240 +0.8 7.0 MBL fold metallo-hydrolase compare
MMJJ_RS07750 +0.8 1.6 class III signal peptide-containing protein compare
MMJJ_RS01855 +0.8 5.2 MBL fold metallo-hydrolase compare
MMJJ_RS06675 +0.7 5.1 TIGR01212 family radical SAM protein compare
MMJJ_RS06680 +0.7 3.4 DUF366 family protein compare
MMJJ_RS05915 +0.6 1.6 multiprotein bridging factor aMBF1 compare
MMJJ_RS07185 +0.6 1.3 DUF371 domain-containing protein compare
MMJJ_RS07015 +0.6 0.9 PFL family protein compare
MMJJ_RS06495 +0.6 1.9 hypothetical protein compare
MMJJ_RS03835 +0.6 2.7 DUF504 domain-containing protein compare
MMJJ_RS03250 +0.6 1.7 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS04955 +0.6 3.0 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS04135 +0.6 2.3 7-cyano-7-deazaguanine synthase QueC compare
MMJJ_RS06210 +0.6 2.8 hypothetical protein compare
MMJJ_RS08130 +0.6 0.5 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS06950 +0.6 3.6 4-demethylwyosine synthase TYW1 compare
MMJJ_RS07280 +0.5 3.7 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS07495 +0.5 3.1 4Fe-4S binding protein compare
MMJJ_RS04545 +0.5 1.8 PadR family transcriptional regulator compare
MMJJ_RS08100 +0.5 2.5 hypothetical protein compare
MMJJ_RS04105 +0.5 4.2 prepilin peptidase compare
MMJJ_RS07005 +0.5 2.0 transcription factor S compare
MMJJ_RS08525 +0.5 2.8 peptidylprolyl isomerase compare
MMJJ_RS07795 +0.5 2.5 cupin domain-containing protein compare
MMJJ_RS09300 +0.5 1.1 hypothetical protein compare
MMJJ_RS06500 +0.5 3.1 class I SAM-dependent methyltransferase compare
MMJJ_RS04965 +0.5 1.0 RNA polymerase Rpb4 family protein compare
MMJJ_RS06200 +0.5 0.9 phosphoglycerate dehydrogenase compare
MMJJ_RS03445 +0.5 2.4 hypothetical protein compare
MMJJ_RS07205 +0.5 2.3 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS07920 +0.5 2.9 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS03605 +0.5 1.4 TIGR00297 family protein compare
MMJJ_RS07025 +0.5 2.5 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS03725 +0.5 1.5 sulfurtransferase TusA family protein compare
MMJJ_RS07220 +0.4 3.2 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS06735 +0.4 3.1 cobalt ECF transporter T component CbiQ compare
MMJJ_RS07225 +0.4 2.5 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS08515 +0.4 1.7 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS08305 +0.4 1.7 peroxiredoxin compare
MMJJ_RS01825 +0.4 2.4 DNA repair and recombination protein RadB compare
MMJJ_RS07235 +0.4 3.4 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS07450 +0.4 2.2 hypothetical protein compare
MMJJ_RS06810 +0.4 3.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS06440 +0.4 2.5 DUF4870 domain-containing protein compare
MMJJ_RS06280 +0.4 3.0 hypothetical protein compare
MMJJ_RS06275 +0.4 1.6 hypothetical protein compare
MMJJ_RS07680 +0.4 2.6 glucose-6-phosphate isomerase compare
MMJJ_RS06770 +0.4 3.0 hypothetical protein compare
MMJJ_RS07210 +0.4 2.7 AmmeMemoRadiSam system protein B compare
MMJJ_RS09065 +0.4 2.1 hypothetical protein compare
MMJJ_RS03515 +0.4 2.5 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS06685 +0.4 3.3 S-layer protein compare
MMJJ_RS05975 +0.4 2.2 sulfurtransferase TusA family protein compare
MMJJ_RS02270 +0.4 1.3 HEPN domain-containing protein compare
MMJJ_RS05530 +0.4 1.3 roadblock/LC7 domain-containing protein compare
MMJJ_RS07215 +0.4 2.9 TIGR00341 family protein compare
MMJJ_RS06190 +0.4 2.6 7-cyano-7-deazaguanine synthase compare
MMJJ_RS00150 +0.4 1.9 DUF2180 family protein compare
MMJJ_RS05525 +0.4 2.1 GTP-binding protein compare
MMJJ_RS00400 +0.4 1.2 tautomerase family protein compare
MMJJ_RS08490 +0.4 1.9 rubrerythrin family protein compare
MMJJ_RS06090 +0.4 2.2 hypothetical protein compare
MMJJ_RS05520 +0.4 2.5 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS00890 +0.4 2.3 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS07890 +0.4 2.1 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS05400 +0.4 1.4 CoA-binding protein compare
MMJJ_RS00145 +0.4 2.7 aquaporin family protein compare
MMJJ_RS05970 +0.4 0.8 MJ0307 family thioredoxin compare
MMJJ_RS07480 +0.4 2.6 FAD-dependent oxidoreductase compare
MMJJ_RS06740 +0.4 1.9 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS06745 +0.4 2.0 energy-coupling factor ABC transporter permease compare
MMJJ_RS01300 +0.3 2.2 MarR family transcriptional regulator compare
MMJJ_RS03070 +0.3 0.8 MetS family NSS transporter small subunit compare
MMJJ_RS07230 +0.3 2.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07260 +0.3 2.2 PspC domain-containing protein compare
MMJJ_RS06460 +0.3 2.0 cytochrome c compare
MMJJ_RS04390 +0.3 2.6 rhomboid family intramembrane serine protease compare
MMJJ_RS08455 +0.3 1.7 tetratricopeptide repeat protein compare
MMJJ_RS06205 +0.3 2.2 EamA family transporter compare
MMJJ_RS01100 +0.3 0.5 helix-turn-helix domain-containing protein compare
MMJJ_RS03360 +0.3 0.4 hypothetical protein compare
MMJJ_RS06515 +0.3 2.2 ribonuclease III compare
MMJJ_RS06120 +0.3 2.0 DUF4013 domain-containing protein compare
MMJJ_RS06710 +0.3 2.4 TldD/PmbA family protein compare
MMJJ_RS06640 +0.3 1.9 YfcE family phosphodiesterase compare
MMJJ_RS04610 +0.3 1.4 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS08225 +0.3 1.3 peptidylprolyl isomerase compare
MMJJ_RS07270 +0.3 1.8 ribonuclease HII compare
MMJJ_RS08285 +0.3 2.1 class I SAM-dependent methyltransferase compare
MMJJ_RS05365 +0.3 1.6 DUF2798 domain-containing protein compare
MMJJ_RS08520 +0.3 0.7 peptidylprolyl isomerase compare
MMJJ_RS01010 +0.3 2.9 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS09360 +0.3 2.0 hypothetical protein compare
MMJJ_RS01590 +0.3 0.5 adenine phosphoribosyltransferase compare
MMJJ_RS04815 +0.3 1.4 TIM barrel protein compare
MMJJ_RS03905 +0.3 1.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS04850 +0.3 1.5 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS06385 +0.3 1.2 hypothetical protein compare
MMJJ_RS06585 +0.3 1.9 alanine racemase compare
MMJJ_RS09325 +0.3 1.3 hypothetical protein compare
MMJJ_RS06535 +0.3 2.2 UPF0104 family protein compare
MMJJ_RS07820 +0.3 2.0 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS07200 +0.3 2.2 MFS transporter compare
MMJJ_RS04215 +0.3 2.2 DMT family transporter compare
MMJJ_RS04420 +0.3 2.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family compare
MMJJ_RS01595 +0.3 1.6 U32 family peptidase compare
MMJJ_RS02115 +0.3 1.8 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS05500 +0.3 2.4 hypothetical protein compare
MMJJ_RS06960 +0.3 2.2 CAP domain-containing protein compare
MMJJ_RS07740 +0.3 1.7 DUF2334 domain-containing protein compare
MMJJ_RS07695 +0.3 2.2 glycoside hydrolase family 15 protein compare
MMJJ_RS05700 +0.3 1.7 metallophosphoesterase compare
MMJJ_RS06470 +0.3 1.8 tripartite tricarboxylate transporter permease compare
MMJJ_RS06580 +0.3 1.8 alanine dehydrogenase compare
MMJJ_RS09405 +0.3 0.7 hypothetical protein compare
MMJJ_RS01140 +0.3 1.0 helix-turn-helix domain-containing protein compare
MMJJ_RS07010 +0.3 1.3 preprotein translocase subunit Sec61beta compare
MMJJ_RS05040 +0.3 1.8 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS06285 +0.3 1.4 YchF/TatD family DNA exonuclease compare
MMJJ_RS05605 +0.3 0.9 hypothetical protein compare
MMJJ_RS05835 +0.3 1.9 bis-aminopropyl spermidine synthase family protein compare
MMJJ_RS05695 +0.3 0.9 class III signal peptide-containing protein compare
MMJJ_RS02230 +0.3 1.9 hypothetical protein compare
MMJJ_RS00635 +0.3 1.8 ABC transporter permease subunit compare
MMJJ_RS03575 +0.2 1.1 NUDIX hydrolase compare
MMJJ_RS07765 +0.2 1.1 DMT family protein compare
MMJJ_RS08315 +0.2 1.7 DNA protection protein DPS compare
MMJJ_RS07835 +0.2 1.2 UPF0489 family protein compare
MMJJ_RS03450 +0.2 1.2 hypothetical protein compare
MMJJ_RS01955 +0.2 1.9 hypothetical protein compare
MMJJ_RS01945 +0.2 1.2 cell division ATPase MinD compare
MMJJ_RS00335 +0.2 1.0 chemotaxis protein CheW compare
MMJJ_RS07815 +0.2 1.6 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS00705 +0.2 1.4 nitrogenase iron protein compare
MMJJ_RS07800 +0.2 1.9 AMP-binding protein compare
MMJJ_RS09230 +0.2 0.9 hypothetical protein compare
MMJJ_RS00640 +0.2 1.8 glycine betaine ABC transporter substrate-binding protein compare
MMJJ_RS06550 +0.2 1.6 ABC transporter permease compare
MMJJ_RS04240 +0.2 1.8 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS02180 +0.2 1.2 DHH family phosphoesterase compare
MMJJ_RS06505 +0.2 0.9 prephenate dehydratase compare
MMJJ_RS05900 +0.2 1.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS06455 +0.2 1.6 YeeE/YedE family protein compare
MMJJ_RS08015 +0.2 1.1 HAD family hydrolase compare
MMJJ_RS03410 +0.2 1.2 hypothetical protein compare
MMJJ_RS05390 +0.2 1.7 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS08195 +0.2 1.1 DUF4186 domain-containing protein compare
MMJJ_RS06790 +0.2 1.7 nucleotidyltransferase family protein compare
MMJJ_RS06520 +0.2 1.6 TldD/PmbA family protein compare
MMJJ_RS06085 +0.2 0.9 proteasome assembly chaperone family protein compare
MMJJ_RS01670 +0.2 1.0 hypothetical protein compare
MMJJ_RS06045 +0.2 1.3 hypothetical protein compare
MMJJ_RS02280 +0.2 1.5 sulfate permease compare
MMJJ_RS07915 +0.2 0.9 CBS domain-containing protein compare
MMJJ_RS03730 +0.2 0.6 SWIM zinc finger family protein compare
MMJJ_RS05200 +0.2 1.5 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS07365 +0.2 1.3 CatB-related O-acetyltransferase compare
MMJJ_RS05715 +0.2 1.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS02160 +0.2 1.2 amino acid ABC transporter permease compare
MMJJ_RS01530 +0.2 0.5 YwbE family protein compare
MMJJ_RS03375 +0.2 0.9 hypothetical protein compare
MMJJ_RS05235 +0.2 1.7 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS03290 +0.2 1.6 amidohydrolase compare
MMJJ_RS06720 +0.2 1.2 mechanosensitive ion channel family protein compare
MMJJ_RS06765 +0.2 1.5 hypothetical protein compare
MMJJ_RS04375 +0.2 0.6 hypothetical protein compare
MMJJ_RS07760 +0.2 0.9 GNAT family N-acetyltransferase compare
MMJJ_RS08735 +0.2 1.4 hypothetical protein compare
MMJJ_RS05405 +0.2 1.4 DNA cytosine methyltransferase compare
MMJJ_RS08310 +0.2 0.9 ZIP family metal transporter compare
MMJJ_RS07175 +0.2 1.5 DEAD/DEAH box helicase compare
MMJJ_RS01745 +0.2 0.9 metal-dependent transcriptional regulator compare
MMJJ_RS04070 +0.2 1.6 DUF2341 domain-containing protein compare
MMJJ_RS05585 +0.2 1.1 hypothetical protein compare
MMJJ_RS06430 +0.2 0.8 haloacid dehalogenase compare
MMJJ_RS08375 +0.2 1.2 ferritin compare
MMJJ_RS04430 +0.2 1.2 purine NTPase compare
MMJJ_RS04745 +0.2 0.8 cyclase family protein compare
MMJJ_RS05090 +0.2 0.8 MGMT family protein compare
MMJJ_RS04300 +0.2 1.1 hypothetical protein compare
MMJJ_RS03345 +0.2 0.7 hypothetical protein compare
MMJJ_RS08045 +0.2 1.3 transporter substrate-binding domain-containing protein compare
MMJJ_RS00695 +0.2 1.0 P-II family nitrogen regulator compare
MMJJ_RS08210 +0.2 1.6 hypothetical protein compare
MMJJ_RS08880 +0.2 0.6 IMPACT family protein compare
MMJJ_RS05410 +0.2 0.9 RecB-family nuclease compare
MMJJ_RS08165 +0.2 0.8 thermonuclease family protein compare
MMJJ_RS01395 +0.2 0.7 DUF1894 domain-containing protein compare
MMJJ_RS08445 +0.2 0.9 cell division ATPase MinD compare
MMJJ_RS05510 +0.2 1.1 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS05690 +0.2 1.5 hypothetical protein compare
MMJJ_RS08275 +0.2 1.5 iron ABC transporter substrate-binding protein compare
MMJJ_RS07810 +0.2 1.0 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS04530 +0.2 1.1 iron export ABC transporter permease subunit FetB compare
MMJJ_RS00630 +0.2 1.0 betaine/proline/choline family ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments