Experiment set3IT044 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Amoxicillin 0.003 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10615 -6.4 -7.6 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS10940 -5.8 -15.5 DedA family protein compare
BBR_RS10255 -5.7 -5.6 chromosomal replication initiator protein DnaA compare
BBR_RS10580 -5.6 -5.5 septation inhibitor protein compare
BBR_RS11540 -5.1 -3.5 DUF1727 domain-containing protein compare
BBR_RS14190 -5.0 -13.6 transcriptional regulator compare
BBR_RS18180 -4.9 -10.9 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS10625 -4.9 -3.4 FHA domain-containing protein compare
BBR_RS19740 -4.9 -26.9 DUF2142 domain-containing protein compare
BBR_RS15070 -4.8 -3.3 endolytic transglycosylase MltG compare
BBR_RS12045 -4.8 -6.6 hypothetical protein compare
BBR_RS18690 -4.8 -4.7 diacylglycerol kinase compare
BBR_RS11175 -4.7 -13.6 penicillin-binding protein compare
BBR_RS12545 -4.6 -4.5 DUF4012 domain-containing protein compare
BBR_RS11515 -4.4 -20.1 ammonium transporter compare
BBR_RS19795 -4.4 -23.9 hypothetical protein compare
BBR_RS19815 -4.4 -27.1 ABC transporter permease compare
BBR_RS17155 -4.3 -2.1 cell division protein SepF compare
BBR_RS10620 -4.3 -4.2 phosphoprotein phosphatase compare
BBR_RS17490 -4.3 -15.1 MoxR family ATPase compare
BBR_RS12235 -4.3 -2.1 hypothetical protein compare
BBR_RS17510 -4.2 -10.1 VWA domain-containing protein compare
BBR_RS17460 -4.0 -10.2 TPM domain-containing protein compare
BBR_RS16220 -4.0 -2.0 DNA cytosine methyltransferase compare
BBR_RS12605 -4.0 -4.8 glycosyltransferase family 2 protein compare
BBR_RS21015 -4.0 -3.9 hypothetical protein compare
BBR_RS18220 -4.0 -15.5 glycosyltransferase family 2 protein compare
BBR_RS17505 -4.0 -12.5 VWA domain-containing protein compare
BBR_RS18735 -3.9 -12.4 hypothetical protein compare
BBR_RS12820 -3.9 -16.5 hypothetical protein compare
BBR_RS13830 -3.9 -1.9 DUF4191 domain-containing protein compare
BBR_RS17495 -3.9 -12.8 DUF58 domain-containing protein compare
BBR_RS19800 -3.8 -21.1 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS17500 -3.8 -9.5 hypothetical protein compare
BBR_RS19760 -3.7 -2.5 polysaccharide ABC transporter ATPase compare
BBR_RS20465 -3.7 -6.1 chromosome partitioning protein compare
BBR_RS19640 -3.6 -1.8 phosphoesterase compare
BBR_RS19820 -3.6 -20.2 ATP-binding protein of ABC transporter system compare
BBR_RS15180 -3.6 -10.3 long-chain fatty acid--CoA ligase compare
BBR_RS18565 -3.6 -2.4 CHAP domain-containing protein compare
BBR_RS14550 -3.6 -10.0 hypothetical protein compare
BBR_RS12810 -3.4 -13.0 hypothetical protein compare
BBR_RS12370 -3.4 -1.7 cell division protein compare
BBR_RS12450 -3.4 -3.9 signal peptidase I compare
BBR_RS19160 -3.3 -2.1 phosphate ABC transporter permease subunit PstC compare
BBR_RS16975 -3.3 -4.2 transcriptional repressor NrdR compare
BBR_RS19755 -3.3 -12.7 glycosyl transferase compare
BBR_RS12940 -3.3 -12.4 hypothetical protein compare
BBR_RS16610 -3.3 -6.2 hypothetical protein compare
BBR_RS17515 -3.2 -9.4 hypothetical protein compare
BBR_RS11720 -3.2 -6.4 DUF2469 domain-containing protein compare
BBR_RS14200 -3.1 -4.6 WhiB family transcriptional regulator compare
BBR_RS16425 -3.0 -2.9 DUF3071 domain-containing protein compare
BBR_RS20480 -3.0 -1.4 membrane protein compare
BBR_RS19450 -2.9 -2.0 GTPase ObgE compare
BBR_RS17290 -2.9 -9.3 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS13070 -2.8 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS12590 -2.8 -3.7 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19155 -2.7 -9.1 phosphate ABC transporter, permease protein PstA compare
BBR_RS16750 -2.6 -1.8 ParA family protein compare
BBR_RS20460 -2.6 -5.3 chromosome partitioning protein ParB compare
BBR_RS12555 -2.6 -11.0 protein-tyrosine-phosphatase compare
BBR_RS12375 -2.6 -2.5 pantetheine-phosphate adenylyltransferase compare
BBR_RS14475 -2.6 -10.9 formate C-acetyltransferase compare
BBR_RS15085 -2.6 -2.4 3-dehydroquinate synthase compare
BBR_RS14615 -2.6 -10.4 histidine kinase compare
BBR_RS13750 -2.4 -3.6 DivIVA domain-containing protein compare
BBR_RS20720 -2.4 -6.1 DUF4422 domain-containing protein compare
BBR_RS16955 -2.4 -3.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS18175 -2.3 -2.2 GTP cyclohydrolase I FolE compare
BBR_RS18050 -2.3 -3.5 threonylcarbamoyl-AMP synthase compare
BBR_RS11240 -2.2 -4.1 GtrA family protein compare
BBR_RS13490 -2.2 -2.1 30S ribosomal protein S7 compare
BBR_RS19120 -2.2 -7.9 helicase compare
BBR_RS13805 -2.2 -3.0 hypothetical protein compare
BBR_RS19190 -2.2 -7.8 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS15805 -2.2 -6.0 prolipoprotein diacylglyceryl transferase compare
BBR_RS14265 -2.2 -5.2 Solute-binding protein of ABC transporter system for metals compare
BBR_RS16905 -2.2 -5.3 hypothetical protein compare
BBR_RS11315 -2.2 -14.2 MFS transporter compare
BBR_RS19465 -2.2 -5.5 ribonuclease E/G compare
BBR_RS11510 -2.1 -3.2 signal recognition particle-docking protein FtsY compare
BBR_RS11505 -2.1 -13.3 TetR/AcrR family transcriptional regulator compare
BBR_RS14540 -2.0 -2.7 Na+/H+ antiporter NhaA compare
BBR_RS13035 -1.9 -1.3 ABC transporter permease compare
BBR_RS13455 -1.9 -3.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS18635 -1.9 -5.2 PspC domain-containing protein compare
BBR_RS19125 -1.9 -7.2 hypothetical protein compare
BBR_RS11675 -1.9 -2.1 hypothetical protein compare
BBR_RS18215 -1.8 -6.7 AI-2E family transporter compare
BBR_RS19375 -1.8 -2.1 acyl-CoA carboxylase subunit beta compare
BBR_RS16985 -1.8 -3.8 transcriptional repressor LexA compare
BBR_RS13030 -1.8 -1.2 cell division ATP-binding protein FtsE compare
BBR_RS18725 -1.8 -2.9 ribonuclease HI compare
BBR_RS15130 -1.7 -1.9 metal-sulfur cluster assembly factor compare
BBR_RS19070 -1.7 -1.4 50S ribosomal protein L33 compare
BBR_RS16625 -1.7 -3.4 DUF3710 domain-containing protein compare
BBR_RS16255 -1.7 -2.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS20400 -1.7 -14.5 serine/threonine protein kinase compare
BBR_RS16940 -1.7 -3.4 hypothetical protein compare
BBR_RS20415 -1.6 -10.4 G5 domain-containing protein compare
BBR_RS12830 -1.6 -7.7 G5 domain-containing protein compare
BBR_RS15055 -1.6 -3.0 hypothetical protein compare
BBR_RS17040 -1.6 -5.5 hypothetical protein compare
BBR_RS14215 -1.6 -2.7 peptidase compare
BBR_RS19260 -1.6 -11.9 hypothetical protein compare
BBR_RS20440 -1.5 -6.0 NUDIX hydrolase compare
BBR_RS19165 -1.5 -2.6 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS14205 -1.5 -2.6 hypothetical protein compare
BBR_RS10660 -1.5 -11.2 esterase compare
BBR_RS10755 -1.5 -4.8 adenylosuccinate synthase compare
BBR_RS19395 -1.4 -2.9 hypothetical protein compare
BBR_RS11255 -1.4 -9.3 hypothetical protein compare
BBR_RS19095 -1.4 -9.0 magnesium transporter compare
BBR_RS14230 -1.4 -3.4 HAMP domain-containing histidine kinase compare
BBR_RS16960 -1.4 -3.2 transcriptional regulator MraZ compare
BBR_RS19170 -1.4 -10.3 DNA-binding response regulator compare
BBR_RS12040 -1.4 -7.7 peptidyl-prolyl cis-trans isomerase compare
BBR_RS12305 -1.4 -3.8 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS13720 -1.4 -6.3 hypothetical protein compare
BBR_RS17395 -1.4 -9.2 DUF349 domain-containing protein compare
BBR_RS18555 -1.4 -7.3 NlpC/P60 family protein compare
BBR_RS20450 -1.3 -9.6 murein biosynthesis integral membrane protein MurJ compare
BBR_RS10900 -1.3 -1.2 molecular chaperone DnaK compare
BBR_RS14240 -1.3 -4.2 1,4-alpha-glucan branching protein GlgB compare
BBR_RS10570 -1.3 -4.8 hypothetical protein compare
BBR_RS14260 -1.2 -1.4 ABC transporter ATP-binding protein compare
BBR_RS18745 -1.2 -1.6 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS19100 -1.2 -9.6 N-acetyltransferase compare
BBR_RS19540 -1.2 -1.6 homoserine dehydrogenase compare
BBR_RS12900 -1.2 -2.2 DeoR/GlpR transcriptional regulator compare
BBR_RS11445 -1.2 -6.6 TetR/AcrR family transcriptional regulator compare
BBR_RS17480 -1.2 -4.3 hypothetical protein compare
BBR_RS13300 -1.2 -1.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS16615 -1.2 -4.2 class I SAM-dependent RNA methyltransferase compare
BBR_RS19945 -1.2 -5.4 MarR family transcriptional regulator compare
BBR_RS13040 -1.1 -0.7 CHAP domain-containing protein compare
BBR_RS12655 -1.1 -5.4 glycosyltransferase family 2 protein compare
BBR_RS21170 -1.1 -6.3 membrane protein insertion efficiency factor YidD compare
BBR_RS19270 -1.1 -1.0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS13840 -1.0 -3.8 DUF3043 domain-containing protein compare
BBR_RS15080 -1.0 -2.0 chorismate synthase compare
BBR_RS10305 -1.0 -8.5 Conserved hypothetical membrane spanning protein, VanZ family compare
BBR_RS20435 -1.0 -0.8 CCA tRNA nucleotidyltransferase compare
BBR_RS11180 -1.0 -8.2 phosphatase PAP2 family protein compare
BBR_RS11970 -1.0 -1.7 Phage transcriptional regulator compare
BBR_RS10555 -1.0 -1.3 DUF3073 domain-containing protein compare
BBR_RS16490 -1.0 -3.3 polyprenyl synthase compare
BBR_RS10665 -1.0 -9.5 DUF2156 domain-containing protein compare
BBR_RS14330 -1.0 -0.9 glycogen debranching enzyme GlgX compare
BBR_RS12380 -1.0 -3.8 DUF3039 domain-containing protein compare
BBR_RS20370 -1.0 -8.1 hypothetical protein compare
BBR_RS18990 -1.0 -1.1 AbrB family transcriptional regulator compare
BBR_RS20240 -1.0 -8.3 hypothetical protein compare
BBR_RS13305 -1.0 -2.7 transcriptional repressor compare
BBR_RS11595 -1.0 -3.7 50S ribosomal protein L9 compare
BBR_RS16530 -1.0 -3.7 recombinase RecA compare
BBR_RS20455 -0.9 -4.7 thioredoxin-disulfide reductase compare
BBR_RS13735 -0.9 -1.1 Lon protease compare
BBR_RS12980 -0.9 -6.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15660 -0.9 -3.0 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS12460 -0.9 -5.5 LacI family DNA-binding transcriptional regulator compare
BBR_RS15845 -0.9 -0.8 hypothetical protein compare
BBR_RS14660 -0.9 -2.0 transcriptional regulator compare
BBR_RS12295 -0.9 -1.1 RNA-binding protein compare
BBR_RS15090 -0.9 -0.9 type II 3-dehydroquinate dehydratase compare
BBR_RS10285 -0.9 -1.6 membrane protein compare
BBR_RS16675 -0.9 -2.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS12245 -0.8 -0.9 polyribonucleotide nucleotidyltransferase compare
BBR_RS20475 -0.8 -7.3 KH domain-containing protein compare
BBR_RS16135 -0.8 -1.8 peptide deformylase compare
BBR_RS14000 -0.8 -3.4 hypothetical protein compare
BBR_RS12985 -0.8 -3.2 MFS transporter compare
BBR_RS20925 -0.8 -1.5 amino acid permease compare
BBR_RS10905 -0.8 -2.9 nucleotide exchange factor GrpE compare
BBR_RS13370 -0.8 -1.8 phosphoribosylamine--glycine ligase compare
BBR_RS16950 -0.8 -0.8 hypothetical protein compare
BBR_RS17555 -0.8 -1.7 ubiquitin-like protein Pup compare
BBR_RS13005 -0.8 -6.2 aminopeptidase N compare
BBR_RS13110 -0.8 -3.7 type III pantothenate kinase compare
BBR_RS15650 -0.8 -0.9 Holliday junction resolvase compare
BBR_RS16620 -0.8 -3.5 DUF3159 domain-containing protein compare
BBR_RS15210 -0.8 -4.1 branched-chain amino acid aminotransferase compare
BBR_RS19325 -0.8 -1.8 hypothetical protein compare
BBR_RS19650 -0.8 -6.5 NUDIX hydrolase compare
BBR_RS20870 -0.8 -1.8 hypothetical protein compare
BBR_RS20725 -0.8 -2.7 hypothetical protein compare
BBR_RS13635 -0.8 -4.2 carbamoyl-phosphate synthase large subunit compare
BBR_RS12860 -0.8 -5.2 DUF2183 domain-containing protein compare
BBR_RS20795 -0.7 -1.4 cystathionine gamma-lyase compare
BBR_RS13630 -0.7 -3.1 carbamoyl-phosphate synthase small subunit compare
BBR_RS11665 -0.7 -2.3 hypothetical protein compare
BBR_RS13845 -0.7 -4.6 dipeptidase compare
BBR_RS14480 -0.7 -3.6 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS19750 -0.7 -6.3 LTA synthase family protein compare
BBR_RS15425 -0.7 -1.6 aspartate carbamoyltransferase compare
BBR_RS20420 -0.7 -3.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS19535 -0.7 -5.6 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS12975 -0.7 -5.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19915 -0.7 -4.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Amoxicillin in Bifidobacterium breve UCC2003

For stress Amoxicillin across organisms