Experiment set3IT044 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Amoxicillin 0.003 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS12620 +3.2 25.0 glycosyltransferase family 1 protein compare
BBR_RS12550 +3.1 27.9 sugar transferase compare
BBR_RS11500 +2.4 20.0 glycosyltransferase family 2 protein compare
BBR_RS14400 +1.8 15.9 acetyltransferase compare
BBR_RS15915 +1.8 2.6 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS12600 +1.6 6.8 serine acetyltransferase compare
BBR_RS18645 +1.4 10.9 DNA-binding response regulator compare
BBR_RS11590 +1.3 1.9 30S ribosomal protein S18 compare
BBR_RS12500 +1.3 2.2 sugar ABC transporter permease compare
BBR_RS13515 +1.3 9.0 putative sulfate exporter family transporter compare
BBR_RS18695 +1.3 9.6 PRD domain-containing protein compare
BBR_RS16670 +1.3 6.9 hypothetical protein compare
BBR_RS17905 +1.3 12.7 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS19055 +1.2 4.2 ferredoxin family protein compare
BBR_RS11210 +1.1 10.2 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS11205 +1.1 5.4 HPr family phosphocarrier protein compare
BBR_RS18575 +1.1 4.6 hypothetical protein compare
BBR_RS12995 +1.0 6.5 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS14495 +1.0 1.7 trigger factor compare
BBR_RS10725 +1.0 9.5 Lead, cadmium, zinc and mercury transporting ATPase compare
BBR_RS18640 +1.0 4.2 PspC domain-containing protein compare
BBR_RS10740 +1.0 1.6 tRNA-Gly compare
BBR_RS12815 +1.0 5.0 hypothetical protein compare
BBR_RS12880 +1.0 7.1 Crp/Fnr family transcriptional regulator compare
BBR_RS14945 +1.0 5.2 peptidase E compare
BBR_RS16605 +0.9 7.4 hypothetical protein compare
BBR_RS18700 +0.9 7.0 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS15695 +0.9 5.7 membrane channel protein compare
BBR_RS16555 +0.9 0.9 DNA translocase FtsK compare
BBR_RS17475 +0.8 4.7 cold-shock protein compare
BBR_RS14485 +0.8 5.2 DUF3000 domain-containing protein compare
BBR_RS10980 +0.8 6.6 TetR/AcrR family transcriptional regulator compare
BBR_RS14850 +0.8 2.8 VOC family protein compare
BBR_RS14335 +0.7 2.3 hypothetical protein compare
BBR_RS15870 +0.7 2.2 hypothetical protein compare
BBR_RS13905 +0.7 4.5 ornithine carbamoyltransferase compare
BBR_RS19440 +0.7 6.1 polysaccharide deacetylase family protein compare
BBR_RS13430 +0.7 4.2 hypothetical protein compare
BBR_RS14370 +0.7 2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS14160 +0.6 2.2 peptidylprolyl isomerase compare
BBR_RS13435 +0.6 4.4 hypothetical protein compare
BBR_RS15970 +0.6 2.8 hypothetical protein compare
BBR_RS20865 +0.6 1.4 glycogen phosphorylase compare
BBR_RS14585 +0.6 1.2 hypothetical protein compare
BBR_RS20100 +0.6 5.2 YhgE/Pip domain-containing protein compare
BBR_RS12310 +0.5 0.9 signal recognition particle protein compare
BBR_RS15030 +0.5 1.9 mRNA interferase PemK compare
BBR_RS16870 +0.5 3.5 ROK family protein compare
BBR_RS14965 +0.5 1.8 DUF2975 domain-containing protein compare
BBR_RS12580 +0.5 2.4 transposase compare
BBR_RS15325 +0.5 1.3 hypothetical protein compare
BBR_RS13960 +0.5 1.5 thiamine biosynthesis protein ThiS compare
BBR_RS18525 +0.5 1.3 hypothetical protein compare
BBR_RS21055 +0.5 0.9 hypothetical protein compare
BBR_RS16020 +0.5 1.2 hypothetical protein compare
BBR_RS18795 +0.5 1.6 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS15100 +0.5 3.4 murein L,D-transpeptidase compare
BBR_RS11355 +0.4 2.0 hypothetical protein compare
BBR_RS20105 +0.4 4.1 YhgE/Pip domain-containing protein compare
BBR_RS13800 +0.4 1.3 hypothetical protein compare
BBR_RS20750 +0.4 1.6 GntR family transcriptional regulator compare
BBR_RS16600 +0.4 2.8 aconitate hydratase AcnA compare
BBR_RS14380 +0.4 3.4 phosphate acetyltransferase compare
BBR_RS12625 +0.4 3.1 glycosyltransferase family 1 protein compare
BBR_RS12505 +0.4 1.8 ABC transporter permease compare
BBR_RS14570 +0.4 2.5 ATP-binding protein compare
BBR_RS12560 +0.4 2.6 transposase compare
BBR_RS15850 +0.4 1.3 ASCH domain-containing protein compare
BBR_RS20965 +0.4 1.6 MFS transporter compare
BBR_RS10750 +0.4 3.7 class II fructose-bisphosphate aldolase compare
BBR_RS14420 +0.4 1.5 ribosome silencing factor compare
BBR_RS20040 +0.4 3.7 amino acid permease compare
BBR_RS14065 +0.4 1.4 TnpV protein compare
BBR_RS18120 +0.4 0.9 hypothetical protein compare
BBR_RS16640 +0.4 1.2 ABC transporter permease compare
BBR_RS16360 +0.4 2.8 sugar ABC transporter substrate-binding protein compare
BBR_RS16385 +0.4 1.2 hypothetical protein compare
BBR_RS12775 +0.4 1.6 hypothetical protein compare
BBR_RS14740 +0.4 1.9 YccF domain-containing protein compare
BBR_RS13535 +0.4 1.5 MerR family DNA-binding transcriptional regulator compare
BBR_RS12120 +0.4 3.1 aspartate ammonia-lyase compare
BBR_RS13015 +0.4 2.6 peptide deformylase compare
BBR_RS15155 +0.4 1.4 histidine triad nucleotide-binding protein compare
BBR_RS15020 +0.4 0.6 membrane protein compare
BBR_RS17065 +0.3 1.9 aldo/keto reductase compare
BBR_RS14155 +0.3 2.3 L-serine ammonia-lyase compare
BBR_RS15865 +0.3 1.3 GNAT family N-acetyltransferase compare
BBR_RS12210 +0.3 2.1 hypothetical protein compare
BBR_RS10345 +0.3 2.7 DNA starvation/stationary phase protection protein compare
BBR_RS14535 +0.3 1.8 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS17580 +0.3 1.6 PTS fructose transporter subunit IIB compare
BBR_RS16570 +0.3 2.3 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
BBR_RS11680 +0.3 2.5 23S rRNA methyltransferase compare
BBR_RS20085 +0.3 2.3 histidine phosphatase family protein compare
BBR_RS11645 +0.3 1.5 integrase compare
BBR_RS15975 +0.3 1.9 hypothetical protein compare
BBR_RS15990 +0.3 2.0 DNA-binding response regulator compare
BBR_RS21035 +0.3 1.2 AMMECR1 domain-containing protein compare
BBR_RS13255 +0.3 1.6 hypothetical protein compare
BBR_RS12540 +0.3 2.2 MFS transporter compare
BBR_RS16845 +0.3 0.6 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS20805 +0.3 1.8 hypothetical protein compare
BBR_RS15280 +0.3 1.6 hypothetical protein compare
BBR_RS10770 +0.3 1.8 CrcB family protein compare
BBR_RS16305 +0.3 2.2 EamA family transporter compare
BBR_RS17740 +0.3 1.7 hypothetical protein compare
BBR_RS18655 +0.3 2.2 aminoglycoside phosphotransferase family protein compare
BBR_RS18620 +0.3 1.7 DUF4125 domain-containing protein compare
BBR_RS12395 +0.3 2.2 hypothetical protein compare
BBR_RS15735 +0.3 2.0 Helicase helY compare
BBR_RS17975 +0.3 1.9 very short patch repair endonuclease compare
BBR_RS15795 +0.3 0.9 phosphoribosyl-ATP diphosphatase compare
BBR_RS12280 +0.3 2.3 aldo/keto reductase compare
BBR_RS12855 +0.3 1.6 glycine cleavage system protein H compare
BBR_RS20065 +0.3 2.3 carbohydrate ABC transporter permease compare
BBR_RS11775 +0.3 2.5 hypothetical protein compare
BBR_RS12910 +0.3 2.5 galactokinase compare
BBR_RS15450 +0.3 0.7 dihydroorotate dehydrogenase compare
BBR_RS18465 +0.3 1.9 integrase compare
BBR_RS12180 +0.3 2.4 DUF2974 domain-containing protein compare
BBR_RS15465 +0.3 1.4 DUF2974 domain-containing protein compare
BBR_RS16880 +0.3 1.8 ROK family transcriptional regulator compare
BBR_RS16885 +0.3 2.2 carbohydrate kinase compare
BBR_RS12760 +0.3 1.8 hypothetical protein compare
BBR_RS20890 +0.3 1.5 hypothetical protein compare
BBR_RS20770 +0.3 1.2 30S ribosomal protein S14 compare
BBR_RS20210 +0.3 2.0 hypothetical protein compare
BBR_RS15785 +0.3 0.6 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS17670 +0.3 1.6 transposase compare
BBR_RS12610 +0.3 0.7 capsular polysaccharide biosynthesis protein compare
BBR_RS19115 +0.3 0.8 hypothetical protein compare
BBR_RS11295 +0.3 1.8 transcriptional regulator compare
BBR_RS18955 +0.3 2.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS20830 +0.3 0.7 hypothetical protein compare
BBR_RS17680 +0.3 0.7 hypothetical protein compare
BBR_RS15365 +0.2 1.2 alpha/beta hydrolase compare
BBR_RS15350 +0.2 0.5 plasmid pRiA4b ORF-3 family protein compare
BBR_RS17760 +0.2 1.6 D-ribose ABC transporter substrate-binding protein compare
BBR_RS20910 +0.2 0.5 DUF1829 domain-containing protein compare
BBR_RS16575 +0.2 1.6 (p)ppGpp synthetase compare
BBR_RS17700 +0.2 1.4 CRISPR-associated protein Cas4 compare
BBR_RS16080 +0.2 0.8 DUF1287 domain-containing protein compare
BBR_RS15330 +0.2 0.8 hypothetical protein compare
BBR_RS18545 +0.2 1.5 peroxiredoxin compare
BBR_RS15955 +0.2 1.4 hypothetical protein compare
BBR_RS17650 +0.2 0.9 cell filamentation protein Fic compare
BBR_RS14445 +0.2 1.2 Solute-binding protein of ABC transporter system compare
BBR_RS14460 +0.2 1.6 amidohydrolase compare
BBR_RS15305 +0.2 0.9 hypothetical protein compare
BBR_RS18005 +0.2 1.5 hypothetical protein compare
BBR_RS14005 +0.2 1.4 haloacid dehalogenase compare
BBR_RS13460 +0.2 1.7 aminotransferase compare
BBR_RS20915 +0.2 0.7 hypothetical protein compare
BBR_RS20970 +0.2 1.4 integrase compare
BBR_RS18570 +0.2 1.9 phosphoserine transaminase compare
BBR_RS14320 +0.2 1.3 Nif3-like dinuclear metal center hexameric protein compare
BBR_RS17005 +0.2 1.4 methyltransferase domain-containing protein compare
BBR_RS18720 +0.2 2.0 pyridine nucleotide-disulfide oxidoreductase compare
BBR_RS17940 +0.2 1.6 large conductance mechanosensitive channel protein MscL compare
BBR_RS18495 +0.2 1.7 ROK family protein compare
BBR_RS15875 +0.2 1.4 DNA-binding protein compare
BBR_RS19145 +0.2 2.1 NCS2 family permease compare
BBR_RS20665 +0.2 0.9 hypothetical protein compare
BBR_RS14765 +0.2 0.5 hypothetical protein compare
BBR_RS13250 +0.2 1.8 alpha-glucosidase compare
BBR_RS14015 +0.2 0.9 hypothetical protein compare
BBR_RS14800 +0.2 1.3 glucosamine-6-phosphate deaminase compare
BBR_RS15760 +0.2 0.9 MerR family transcriptional regulator compare
BBR_RS12715 +0.2 1.1 helix-turn-helix domain-containing protein compare
BBR_RS19355 +0.2 0.4 tRNA-Gly compare
BBR_RS13390 +0.2 1.1 hypothetical protein compare
BBR_RS17695 +0.2 1.4 type I-C CRISPR-associated endonuclease Cas1 compare
BBR_RS12475 +0.2 1.1 heme utilization protein HutZ compare
BBR_RS18510 +0.2 1.8 ABC transporter permease compare
BBR_RS17175 +0.2 1.6 hypothetical protein compare
BBR_RS21145 +0.2 1.4 ISL3 family transposase compare
BBR_RS21115 +0.2 1.4 hypothetical protein compare
BBR_RS13510 +0.2 1.3 LysR family transcriptional regulator compare
BBR_RS15220 +0.2 1.2 trimeric intracellular cation channel family protein compare
BBR_RS19885 +0.2 1.8 ABC transporter permease compare
BBR_RS14620 +0.2 1.3 proline iminopeptidase compare
BBR_RS13955 +0.2 1.4 argininosuccinate lyase compare
BBR_RS18440 +0.2 0.9 hypothetical protein compare
BBR_RS15920 +0.2 1.0 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS15215 +0.2 1.0 MazG-like protein compare
BBR_RS16330 +0.2 1.4 LacI family transcriptional regulator compare
BBR_RS18345 +0.2 1.1 hypothetical protein compare
BBR_RS21135 +0.2 1.3 hypothetical protein compare
BBR_RS16380 +0.2 0.9 hypothetical protein compare
BBR_RS17250 +0.2 1.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS15945 +0.2 0.9 hypothetical protein compare
BBR_RS14665 +0.2 1.1 MATE family efflux transporter compare
BBR_RS16270 +0.2 1.3 competence protein ComEA compare
BBR_RS20325 +0.2 1.4 PTS lactose transporter subunit IIB compare
BBR_RS16165 +0.2 0.9 M23 family peptidase compare
BBR_RS13575 +0.2 0.9 sugar O-acetyltransferase compare
BBR_RS14340 +0.2 1.0 helix-turn-helix domain-containing protein compare
BBR_RS17190 +0.2 0.9 transcriptional regulator compare
BBR_RS16215 +0.2 1.3 restriction enzyme compare
BBR_RS14845 +0.2 0.9 permease compare


Specific Phenotypes

For 1 genes in this experiment

For stress Amoxicillin in Bifidobacterium breve UCC2003

For stress Amoxicillin across organisms