Experiment set3IT043 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.5 -14.3 S41 family peptidase compare
PFLU_RS03645 -5.1 -17.1 tetratricopeptide repeat protein compare
PFLU_RS28695 -5.1 -6.1 phosphoglycerate dehydrogenase compare
PFLU_RS01620 -4.7 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28645 -4.6 -20.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01605 -4.3 -10.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27365 -4.3 -10.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24125 -4.1 -6.2 cold-shock protein compare
PFLU_RS27370 -4.0 -13.0 anthranilate phosphoribosyltransferase compare
PFLU_RS01900 -4.0 -8.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01895 -3.9 -7.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02590 -3.8 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28535 -3.8 -17.7 dihydroxy-acid dehydratase compare
PFLU_RS22595 -3.8 -2.6 OmpA family protein compare
PFLU_RS04465 -3.8 -11.3 ATP phosphoribosyltransferase compare
PFLU_RS28655 -3.8 -14.9 HAD family hydrolase compare
PFLU_RS00180 -3.8 -8.7 tryptophan synthase subunit beta compare
PFLU_RS20540 -3.7 -12.5 phosphoribosylanthranilate isomerase compare
PFLU_RS29515 -3.7 -15.0 RidA family protein compare
PFLU_RS02490 -3.7 -14.3 phosphoserine phosphatase SerB compare
PFLU_RS12980 -3.7 -10.2 nitrite/sulfite reductase compare
PFLU_RS18505 -3.6 -11.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS26545 -3.6 -14.7 sel1 repeat family protein compare
PFLU_RS28965 -3.6 -11.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22095 -3.6 -22.1 GTP diphosphokinase compare
PFLU_RS04470 -3.5 -12.6 histidinol dehydrogenase compare
PFLU_RS23065 -3.5 -12.1 phosphate acyltransferase PlsX compare
PFLU_RS25735 -3.5 -7.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07650 -3.5 -17.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25755 -3.4 -4.0 pantoate--beta-alanine ligase compare
PFLU_RS23070 -3.4 -2.2 50S ribosomal protein L32 compare
PFLU_RS25640 -3.4 -13.5 ketol-acid reductoisomerase compare
PFLU_RS03765 -3.4 -12.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01485 -3.4 -17.2 cellulase compare
PFLU_RS01625 -3.4 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS21300 -3.3 -8.5 cysteine hydrolase compare
PFLU_RS22740 -3.3 -6.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS03770 -3.3 -15.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS12975 -3.2 -7.0 DUF934 domain-containing protein compare
PFLU_RS29095 -3.2 -25.3 polyphosphate kinase 1 compare
PFLU_RS20565 -3.2 -15.8 3-isopropylmalate dehydrogenase compare
PFLU_RS00175 -3.1 -10.2 tryptophan synthase subunit alpha compare
PFLU_RS28165 -3.1 -14.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01610 -3.1 -14.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS07160 -3.1 -17.3 response regulator conserved
PFLU_RS07165 -3.0 -17.7 sensor histidine kinase conserved
PFLU_RS06320 -3.0 -5.1 OmpH family outer membrane protein compare
PFLU_RS24025 -2.9 -13.1 quinolinate synthase NadA compare
PFLU_RS27620 -2.9 -19.7 acyl-CoA dehydrogenase compare
PFLU_RS20580 -2.9 -15.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS09055 -2.9 -3.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS22105 -2.9 -7.1 cysteine synthase CysM compare
PFLU_RS03970 -2.9 -12.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20575 -2.9 -7.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS23920 -2.9 -4.3 septation protein A compare
PFLU_RS24765 -2.8 -20.2 2-isopropylmalate synthase compare
PFLU_RS04070 -2.8 -6.7 peptide chain release factor 3 compare
PFLU_RS21060 -2.8 -5.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS22070 -2.7 -6.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS25730 -2.7 -18.1 PAS domain S-box protein compare
PFLU_RS26905 -2.7 -11.6 transcriptional regulator NrdR compare
PFLU_RS18645 -2.7 -3.0 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS20515 -2.6 -4.0 amidophosphoribosyltransferase compare
PFLU_RS01320 -2.6 -10.2 phosphoenolpyruvate carboxykinase compare
PFLU_RS29725 -2.6 -13.6 phosphate regulon transcriptional regulatory protein PhoB compare
PFLU_RS25750 -2.6 -7.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS31590 -2.5 -2.7 hypothetical protein compare
PFLU_RS23680 -2.5 -17.7 long-chain fatty acid--CoA ligase compare
PFLU_RS04430 -2.5 -9.1 ATP-binding cassette domain-containing protein compare
PFLU_RS23310 -2.5 -10.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS08155 -2.5 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS02365 -2.4 -13.9 glycosyltransferase compare
PFLU_RS26770 -2.4 -13.4 DedA family protein compare
PFLU_RS18665 -2.4 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS26595 -2.4 -1.6 lipoprotein compare
PFLU_RS18670 -2.4 -2.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS02980 -2.3 -2.7 precorrin-8X methylmutase compare
PFLU_RS28385 -2.3 -13.2 homoserine O-acetyltransferase compare
PFLU_RS25360 -2.3 -8.2 glutamate 5-kinase compare
PFLU_RS20510 -2.3 -13.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS00510 -2.3 -16.3 CitMHS family transporter conserved
PFLU_RS18620 -2.3 -4.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS13540 -2.3 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS07785 -2.2 -11.9 VacJ family lipoprotein compare
PFLU_RS04565 -2.2 -1.9 TMEM165/GDT1 family protein compare
PFLU_RS28390 -2.2 -8.5 methionine biosynthesis protein MetW compare
PFLU_RS23305 -2.2 -11.4 arginine N-succinyltransferase compare
PFLU_RS24485 -2.2 -11.9 hypothetical protein compare
PFLU_RS25815 -2.2 -2.5 transcription termination/antitermination protein NusA compare
PFLU_RS24085 -2.1 -4.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS00415 -2.1 -2.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS26640 -2.1 -12.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS08505 -2.0 -7.9 protease HtpX compare
PFLU_RS24095 -2.0 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS18675 -2.0 -1.9 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS29730 -2.0 -10.2 phosphate regulon sensor histidine kinase PhoR compare
PFLU_RS20730 -2.0 -2.2 hypothetical protein compare
PFLU_RS09980 -1.9 -14.1 peptidase S41 compare
PFLU_RS08410 -1.9 -7.2 HTH-type transcriptional regulator CysB compare
PFLU_RS25585 -1.9 -1.3 exodeoxyribonuclease V subunit alpha compare
PFLU_RS08160 -1.9 -9.0 sugar transferase compare
PFLU_RS14550 -1.9 -8.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS18655 -1.9 -2.7 NADH-quinone oxidoreductase subunit J compare
PFLU_RS07275 -1.9 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04715 -1.9 -5.7 D-alanine--D-alanine ligase compare
PFLU_RS25740 -1.9 -5.5 polynucleotide adenylyltransferase PcnB compare
PFLU_RS18530 -1.8 -5.2 DNA translocase FtsK compare
PFLU_RS05210 -1.8 -2.7 HU family DNA-binding protein compare
PFLU_RS07150 -1.8 -11.3 tripartite tricarboxylate transporter substrate binding protein conserved
PFLU_RS04660 -1.8 -6.4 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS25920 -1.8 -2.3 outer membrane protein assembly factor BamE compare
PFLU_RS02370 -1.8 -9.4 glycosyltransferase compare
PFLU_RS07655 -1.8 -6.6 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS18640 -1.8 -4.3 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS19175 -1.7 -8.4 trigger factor compare
PFLU_RS21995 -1.7 -4.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS01960 -1.7 -2.0 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS07645 -1.7 -4.4 hypothetical protein compare
PFLU_RS04440 -1.7 -9.0 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS18615 -1.7 -2.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS08165 -1.7 -2.4 acyl carrier protein compare
PFLU_RS29490 -1.7 -8.6 ribonuclease PH compare
PFLU_RS18635 -1.6 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS21495 -1.6 -3.4 TlpA family protein disulfide reductase compare
PFLU_RS25225 -1.6 -7.9 disulfide bond formation protein B compare
PFLU_RS24670 -1.6 -2.1 HigA family addiction module antidote protein compare
PFLU_RS22600 -1.6 -1.5 RNA polymerase sigma factor SigX compare
PFLU_RS08665 -1.6 -1.1 cytochrome c maturation protein CcmE compare
PFLU_RS21985 -1.6 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS04445 -1.5 -6.2 ABC transporter substrate-binding protein compare
PFLU_RS23185 -1.5 -9.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS28650 -1.5 -6.0 RNA pyrophosphohydrolase compare
PFLU_RS02180 -1.5 -1.4 thioredoxin TrxC compare
PFLU_RS15410 -1.5 -2.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS06055 -1.5 -1.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS05250 -1.5 -4.6 elongation factor 4 compare
PFLU_RS20690 -1.5 -4.0 hypothetical protein compare
PFLU_RS04435 -1.5 -6.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS04325 -1.5 -11.4 ribonuclease G compare
PFLU_RS08655 -1.5 -1.0 heme ABC transporter permease compare
PFLU_RS31215 -1.5 -2.3 hypothetical protein compare
PFLU_RS30165 -1.4 -7.4 ParA family protein compare
PFLU_RS25715 -1.4 -8.8 RNA polymerase-binding protein DksA compare
PFLU_RS18625 -1.4 -5.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS01965 -1.4 -1.7 ATP-dependent protease subunit HslV compare
PFLU_RS21965 -1.4 -10.2 transporter compare
PFLU_RS24090 -1.4 -3.6 Holliday junction branch migration protein RuvA compare
PFLU_RS31630 -1.4 -3.1 hypothetical protein compare
PFLU_RS27380 -1.4 -8.9 anthranilate synthase component I compare
PFLU_RS04385 -1.4 -8.1 RNase adapter RapZ compare
PFLU_RS11980 -1.4 -6.1 precorrin-6A synthase (deacetylating) compare
PFLU_RS26020 -1.4 -8.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS28725 -1.4 -8.3 DUF2059 domain-containing protein compare
PFLU_RS21645 -1.3 -6.8 chemotaxis protein CheA compare
PFLU_RS01665 -1.3 -3.1 glutaredoxin 3 compare
PFLU_RS02970 -1.3 -5.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS07665 -1.3 -1.5 type I DNA topoisomerase compare
PFLU_RS09500 -1.3 -1.9 hypothetical protein compare
PFLU_RS25645 -1.3 -1.5 acetolactate synthase small subunit compare
PFLU_RS16390 -1.3 -2.3 DUF411 domain-containing protein compare
PFLU_RS13045 -1.3 -5.9 AAA domain-containing protein compare
PFLU_RS06555 -1.3 -7.8 OmpA family protein compare
PFLU_RS19165 -1.3 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS16055 -1.3 -2.7 GntR family transcriptional regulator compare
PFLU_RS02975 -1.3 -5.0 precorrin-3B synthase compare
PFLU_RS20660 -1.3 -6.5 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS00195 -1.3 -1.7 dodecin domain-containing protein compare
PFLU_RS27475 -1.3 -5.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS26735 -1.2 -6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS13000 -1.2 -9.6 methionine synthase compare
PFLU_RS23730 -1.2 -8.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS29275 -1.2 -4.2 DUF484 family protein compare
PFLU_RS20520 -1.2 -6.7 colicin V production protein CvpA compare
PFLU_RS05540 -1.2 -8.2 LysR family transcriptional regulator compare
PFLU_RS18420 -1.2 -2.3 hypothetical protein compare
PFLU_RS02460 -1.2 -7.4 alpha/beta fold hydrolase compare
PFLU_RS04475 -1.2 -7.6 histidinol-phosphate transaminase compare
PFLU_RS07695 -1.2 -2.1 beta-N-acetylhexosaminidase compare
PFLU_RS14820 -1.2 -3.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS13665 -1.1 -1.4 MarR family transcriptional regulator compare
PFLU_RS29360 -1.1 -1.6 cytochrome c5 family protein compare
PFLU_RS29880 -1.1 -7.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS05885 -1.1 -4.2 recombinase RecA compare
PFLU_RS24790 -1.1 -4.1 tetratricopeptide repeat protein compare
PFLU_RS23390 -1.1 -2.4 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS31400 -1.1 -5.0 hypothetical protein compare
PFLU_RS27440 -1.1 -5.6 nucleotidyltransferase family protein compare
PFLU_RS03610 -1.1 -4.7 redox-regulated ATPase YchF compare
PFLU_RS25875 -1.1 -2.3 transcription elongation factor GreA compare
PFLU_RS22015 -1.1 -6.9 cobalamin biosynthesis protein compare
PFLU_RS03075 -1.1 -1.7 translation initiation factor Sui1 compare
PFLU_RS28325 -1.1 -5.2 energy transducer TonB compare
PFLU_RS29900 -1.0 -6.8 DNA helicase II compare
PFLU_RS29090 -1.0 -5.5 exopolyphosphatase compare
PFLU_RS02310 -1.0 -5.1 LPS kinase compare
PFLU_RS04650 -1.0 -8.2 ABC transporter substrate-binding protein compare
PFLU_RS22605 -1.0 -5.5 mechanosensitive ion channel compare
PFLU_RS19170 -1.0 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS23240 -1.0 -7.0 magnesium transporter compare
PFLU_RS03555 -1.0 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Trisodium citrate dihydrate across organisms