Experiment set3IT043 for Methanococcus maripaludis JJ

Compare to:

formate McAA thiamine dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS06860 -6.2 -4.3 hypothetical protein compare
MMJJ_RS00235 -6.0 -20.8 hypothetical protein compare
MMJJ_RS00570 -5.8 -2.5 ribonuclease P compare
MMJJ_RS04200 -5.5 -6.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05450 -5.4 -19.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS00275 -5.3 -3.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06695 -5.2 -3.5 amidohydrolase compare
MMJJ_RS06625 -5.2 -2.6 pyruvate synthase subunit PorB compare
MMJJ_RS05445 -5.1 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS04475 -5.0 -4.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06875 -5.0 -3.9 hypothetical protein compare
MMJJ_RS04485 -5.0 -10.9 riboflavin synthase compare
MMJJ_RS08320 -4.9 -2.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05650 -4.7 -3.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07380 -4.6 -11.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06240 -4.6 -3.9 dihydropteroate synthase-like protein compare
MMJJ_RS04050 -4.4 -2.6 dihydroneopterin aldolase family protein compare
MMJJ_RS02090 -4.4 -7.2 tyramine--L-glutamate ligase compare
MMJJ_RS02040 -4.4 -2.7 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05995 -4.3 -3.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS03840 -4.3 -4.1 DHH family phosphoesterase compare
MMJJ_RS03580 -4.2 -4.8 TIGR00303 family protein compare
MMJJ_RS03190 -4.1 -2.8 phosphopyruvate hydratase compare
MMJJ_RS06110 -4.0 -2.5 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05575 -4.0 -5.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03820 -4.0 -5.4 hydrogenase formation protein HypD compare
MMJJ_RS07720 -3.9 -2.3 UPF0058 family protein compare
MMJJ_RS03670 -3.9 -6.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS04730 -3.8 -3.5 tyrosine decarboxylase MfnA compare
MMJJ_RS05610 -3.8 -5.7 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS01935 -3.8 -5.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS00355 -3.8 -3.3 ribonuclease P protein component 4 compare
MMJJ_RS08020 -3.8 -10.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07665 -3.8 -22.8 formate dehydrogenase subunit alpha compare
MMJJ_RS00215 -3.7 -3.2 CCA tRNA nucleotidyltransferase compare
MMJJ_RS05935 -3.7 -3.1 Era-like GTP-binding protein compare
MMJJ_RS08625 -3.7 -7.9 magnesium/cobalt transporter CorA compare
MMJJ_RS08250 -3.7 -9.1 hydrogenase maturation peptidase HycI compare
MMJJ_RS06910 -3.7 -3.7 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03760 -3.7 -4.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03055 -3.6 -3.0 hypothetical protein compare
MMJJ_RS05535 -3.6 -14.7 hypothetical protein compare
MMJJ_RS08330 -3.5 -4.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06040 -3.5 -5.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04800 -3.5 -7.3 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05260 -3.5 -7.6 ATP-grasp domain-containing protein compare
MMJJ_RS03125 -3.5 -6.2 GMC oxidoreductase compare
MMJJ_RS07670 -3.5 -18.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06725 -3.5 -13.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS07950 -3.4 -3.4 4Fe-4S binding protein compare
MMJJ_RS01810 -3.4 -2.2 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03895 -3.4 -4.6 hydrogenase expression/formation protein HypE compare
MMJJ_RS01755 -3.4 -2.9 ferrous iron transport protein B compare
MMJJ_RS06180 -3.4 -3.7 tryptophan--tRNA ligase compare
MMJJ_RS06255 -3.3 -7.7 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05490 -3.3 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS02935 -3.3 -4.0 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS03095 -3.3 -3.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08055 -3.3 -7.3 methanogenesis marker 14 protein compare
MMJJ_RS03005 -3.3 -5.2 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS00125 -3.3 -3.0 KEOPS complex subunit Cgi121 compare
MMJJ_RS05330 -3.3 -2.9 DNA polymerase II large subunit compare
MMJJ_RS04790 -3.3 -4.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06805 -3.3 -3.9 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS03865 -3.3 -1.9 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS07655 -3.2 -14.1 hypothetical protein compare
MMJJ_RS00520 -3.2 -7.8 PDGLE domain-containing protein compare
MMJJ_RS01750 -3.2 -3.2 ferrous iron transport protein A compare
MMJJ_RS04685 -3.2 -11.0 carbamoyltransferase HypF compare
MMJJ_RS05190 -3.2 -7.1 gamma carbonic anhydrase family protein compare
MMJJ_RS06485 -3.1 -3.8 phosphoglycerate kinase compare
MMJJ_RS08080 -3.1 -10.0 TIGR00300 family protein compare
MMJJ_RS08005 -3.1 -16.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS04520 -3.1 -5.6 coenzyme F430 synthase compare
MMJJ_RS06840 -3.1 -5.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01600 -3.1 -3.8 radical SAM protein compare
MMJJ_RS06915 -3.1 -13.6 helix-turn-helix domain-containing protein compare
MMJJ_RS09175 -3.1 -1.4 anthranilate synthase component I compare
MMJJ_RS02275 -3.1 -4.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS01200 -3.1 -3.5 PRC-barrel domain-containing protein compare
MMJJ_RS03110 -3.0 -4.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06390 -3.0 -2.6 NADPH-dependent F420 reductase compare
MMJJ_RS00580 -3.0 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05930 -3.0 -2.5 cell division protein SepF compare
MMJJ_RS04155 -3.0 -7.3 hypothetical protein compare
MMJJ_RS04655 -3.0 -7.4 FAD-dependent oxidoreductase compare
MMJJ_RS07705 -3.0 -4.3 GTP-binding protein EngB compare
MMJJ_RS00050 -3.0 -11.2 AAA family ATPase compare
MMJJ_RS03830 -2.9 -10.5 CBS domain-containing protein compare
MMJJ_RS02045 -2.9 -3.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07470 -2.9 -2.1 50S ribosome-binding GTPase compare
MMJJ_RS08000 -2.9 -9.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS03620 -2.9 -6.3 DUF2097 domain-containing protein compare
MMJJ_RS05950 -2.9 -3.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS08660 -2.9 -3.5 acetylornithine transaminase compare
MMJJ_RS00075 -2.9 -10.2 AAA family ATPase compare
MMJJ_RS03615 -2.9 -3.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00045 -2.9 -14.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS05070 -2.9 -2.7 DNA primase catalytic subunit PriS compare
MMJJ_RS00370 -2.8 -2.2 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS04675 -2.8 -7.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS00040 -2.8 -8.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS01690 -2.8 -4.1 methanogenesis marker 12 protein compare
MMJJ_RS06705 -2.8 -5.8 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05810 -2.8 -7.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00070 -2.8 -3.6 CooT family nickel-binding protein compare
MMJJ_RS03875 -2.7 -3.8 CBS domain-containing protein compare
MMJJ_RS00360 -2.7 -3.5 adenosylhomocysteinase compare
MMJJ_RS00270 -2.7 -4.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00035 -2.7 -16.0 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS07245 -2.7 -5.4 amidohydrolase family protein compare
MMJJ_RS07360 -2.7 -1.9 TIGR00269 family protein compare
MMJJ_RS00065 -2.7 -12.4 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07660 -2.7 -10.7 carbonic anhydrase compare
MMJJ_RS06835 -2.7 -11.7 4Fe-4S binding protein compare
MMJJ_RS05620 -2.7 -5.8 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03295 -2.7 -17.1 PHP domain-containing protein compare
MMJJ_RS04995 -2.7 -4.6 Tfx family DNA-binding protein compare
MMJJ_RS08840 -2.7 -5.8 calcium/sodium antiporter compare
MMJJ_RS07785 -2.7 -3.7 fumarate reductase subunit A compare
MMJJ_RS05225 -2.7 -1.8 Gar1/Naf1 family protein compare
MMJJ_RS06250 -2.7 -3.1 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05655 -2.6 -7.7 HisA/HisF family protein compare
MMJJ_RS04980 -2.6 -5.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07345 -2.6 -7.0 homocysteine biosynthesis protein compare
MMJJ_RS04875 -2.6 -1.8 tRNA-Lys compare
MMJJ_RS06785 -2.6 -8.3 RNA ligase partner protein compare
MMJJ_RS07410 -2.6 -4.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08855 -2.6 -5.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS01360 -2.6 -2.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS00055 -2.5 -9.6 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00530 -2.5 -11.2 cobalt ECF transporter T component CbiQ compare
MMJJ_RS08155 -2.5 -4.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS00560 -2.5 -3.4 homoisocitrate dehydrogenase compare
MMJJ_RS03785 -2.5 -2.9 hypothetical protein compare
MMJJ_RS01880 -2.5 -3.2 RlmE family RNA methyltransferase compare
MMJJ_RS06510 -2.5 -2.9 LL-diaminopimelate aminotransferase compare
MMJJ_RS06750 -2.5 -2.7 homoaconitase large subunit compare
MMJJ_RS00080 -2.5 -13.0 DUF166 domain-containing protein compare
MMJJ_RS00060 -2.5 -15.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS08620 -2.5 -4.0 DUF373 family protein compare
MMJJ_RS09190 -2.5 -2.3 tryptophan synthase subunit beta compare
MMJJ_RS01565 -2.4 -6.9 TIGR00267 family protein compare
MMJJ_RS01415 -2.4 -2.9 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03230 -2.4 -3.7 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06730 -2.4 -7.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS06155 -2.4 -5.4 phosphatidylglycerophosphatase A compare
MMJJ_RS06930 -2.4 -2.8 type II methionyl aminopeptidase compare
MMJJ_RS04670 -2.4 -5.0 DUF2117 domain-containing protein compare
MMJJ_RS08340 -2.4 -4.1 archaeoflavoprotein AfpA compare
MMJJ_RS01345 -2.4 -4.8 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS03065 -2.4 -10.9 CBS domain-containing protein compare
MMJJ_RS03150 -2.4 -5.3 2-phospho-L-lactate transferase compare
MMJJ_RS05360 -2.4 -5.2 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS07155 -2.4 -9.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06185 -2.3 -5.3 cobalamin biosynthesis protein compare
MMJJ_RS07635 -2.3 -10.6 response regulator transcription factor compare
MMJJ_RS07995 -2.3 -6.5 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS06375 -2.3 -4.8 UbiX family flavin prenyltransferase compare
MMJJ_RS01870 -2.3 -2.5 methanogenesis marker 15 protein compare
MMJJ_RS07425 -2.3 -9.9 MBL fold metallo-hydrolase compare
MMJJ_RS01865 -2.3 -4.4 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS02920 -2.2 -2.6 30S ribosomal protein S27ae compare
MMJJ_RS03630 -2.2 -11.4 AMP phosphorylase compare
MMJJ_RS07640 -2.2 -17.5 cache domain-containing protein compare
MMJJ_RS06865 -2.2 -2.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06760 -2.2 -5.4 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS04970 -2.2 -1.9 DUF655 domain-containing protein compare
MMJJ_RS03490 -2.2 -2.3 ribonuclease VapC compare
MMJJ_RS04615 -2.2 -3.5 methanogenesis marker 3 protein compare
MMJJ_RS05720 -2.2 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS07650 -2.1 -15.6 formate/nitrite transporter family protein compare
MMJJ_RS01355 -2.1 -3.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS00195 -2.1 -4.1 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS06270 -2.1 -9.1 dethiobiotin synthase compare
MMJJ_RS08065 -2.1 -2.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06050 -2.1 -10.5 molybdopterin molybdotransferase MoeA compare
MMJJ_RS08035 -2.1 -6.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS03115 -2.1 -5.8 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS03845 -2.1 -4.3 translation initiation factor IF-2 compare
MMJJ_RS00450 -2.1 -2.1 DUF126 domain-containing protein compare
MMJJ_RS08095 -2.1 -5.0 cobyric acid synthase CobQ compare
MMJJ_RS00600 -2.0 -3.4 hydroxymethylbilane synthase compare
MMJJ_RS05375 -2.0 -14.8 radical SAM protein compare
MMJJ_RS06015 -2.0 -9.1 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS00265 -2.0 -6.4 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS03270 -2.0 -2.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00515 -2.0 -8.0 cobalt transporter CbiM compare
MMJJ_RS07350 -2.0 -2.7 4Fe-4S binding protein compare
MMJJ_RS03160 -2.0 -12.9 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS03800 -2.0 -10.0 aldolase compare
MMJJ_RS04565 -2.0 -3.1 sirohydrochlorin nickelochelatase compare
MMJJ_RS07980 -2.0 -10.3 biotin synthase BioB compare
MMJJ_RS07275 -2.0 -2.7 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS06905 -1.9 -2.0 hypothetical protein compare
MMJJ_RS04595 -1.9 -4.2 hypothetical protein compare
MMJJ_RS06260 -1.9 -7.2 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS06000 -1.9 -4.9 cation:proton antiporter subunit C compare
MMJJ_RS08795 -1.9 -2.3 phosphoglucosamine mutase compare
MMJJ_RS06855 -1.9 -1.8 DUF2104 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments