Experiment set3IT043 for Bacteroides thetaiotaomicron VPI-5482

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polygalacturonic acid

200 most important genes:

  gene name fitness t score description  
BT2302 -3.8 -1.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0074 -3.3 -2.3 hypothetical protein (NCBI ptt file) compare
BT2122 -3.2 -2.2 lysyl-tRNA synthetase (NCBI ptt file) compare
BT0892 -2.9 -2.0 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1990 -2.9 -2.0 hypothetical protein (NCBI ptt file) compare
BT4206 -2.6 -1.8 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file) compare
BT3197 -2.6 -1.8 hypothetical protein (NCBI ptt file) compare
BT0530 -2.5 -3.0 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT1567 -2.4 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0313 -2.4 -1.6 flavodoxin (NCBI ptt file) compare
BT4271 -2.3 -2.2 hypothetical protein (NCBI ptt file) compare
BT2283 -2.3 -1.5 hypothetical protein (NCBI ptt file) compare
BT0429 -2.1 -2.1 indolepyruvate oxidoreductase subunit iorB (NCBI ptt file) compare
BT0828 -2.1 -1.5 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT3694 -2.1 -1.4 glycosyltransferase (NCBI ptt file) compare
BT1276 -2.1 -2.8 L-fucose mutarotase FucU (EC 5.1.3.29) (from data) compare
BT4018 -2.0 -2.0 hypothetical protein (NCBI ptt file) compare
BT3395 -2.0 -6.6 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT1153 -2.0 -4.2 phosphoserine aminotransferase (NCBI ptt file) compare
BT_2008 -2.0 -1.9 hypothetical protein (RefSeq) compare
BT0200 -2.0 -2.3 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT3760 -2.0 -4.1 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT3253 -1.9 -1.9 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT1858 -1.9 -5.0 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT3758 -1.9 -2.9 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT2402 -1.9 -8.7 phosphoglycerate mutase (NCBI ptt file) compare
BT1152 -1.9 -2.9 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT3882 -1.9 -1.8 putative DNA binding protein (NCBI ptt file) compare
BT3554 -1.9 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1377 -1.9 -2.5 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3717 -1.8 -3.5 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT3759 -1.8 -7.1 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT0185 -1.8 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT2042 -1.8 -1.7 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT0178 -1.8 -2.4 hypothetical protein (NCBI ptt file) compare
BT0833 -1.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT3757 -1.8 -4.3 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT2129 -1.8 -4.6 aspartate--ammonia ligase (NCBI ptt file) compare
BT1857 -1.7 -4.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT2417 -1.7 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2078 -1.7 -8.6 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT1375 -1.7 -5.8 aspartokinase (NCBI ptt file) compare
BT2837 -1.7 -8.5 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT1295 -1.7 -1.2 V-type sodium ATP synthase subunit K (NCBI ptt file) compare
BT0486 -1.7 -4.8 altronate hydrolase (NCBI ptt file) compare
BT2093 -1.6 -1.6 hypothetical protein (NCBI ptt file) compare
BT1379 -1.6 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT3762 -1.6 -3.1 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT0531 -1.6 -1.9 anthranilate synthase component II (NCBI ptt file) compare
BT1207 -1.6 -1.9 glycerate dehydrogenase (NADH-dependent) (NCBI ptt file) compare
BT0949 -1.6 -1.5 hypothetical protein (NCBI ptt file) compare
BT0249 -1.6 -1.5 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT0546 -1.6 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT2415 -1.6 -6.9 aspartate aminotransferase (NCBI ptt file) compare
BT2003 -1.6 -1.1 putative membrane peptidase (NCBI ptt file) compare
BT4249 -1.6 -1.1 hypothetical protein (NCBI ptt file) compare
BT0702 -1.6 -1.8 chloramphenicol acetyltransferase (CAT-III) (NCBI ptt file) compare
BT3549 -1.6 -5.5 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT4098 -1.6 -1.1 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT1607 -1.5 -3.3 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT2076 -1.5 -5.7 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0199 -1.5 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT2401 -1.5 -5.8 threonine synthase (NCBI ptt file) compare
BT0529 -1.5 -1.8 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT2236 -1.5 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT1843 -1.5 -5.3 adenylosuccinate synthetase (NCBI ptt file) compare
BT3761 -1.5 -3.5 N-succinylglutamate synthase (from data) compare
BT4644 -1.5 -2.0 putative anti-sigma factor (NCBI ptt file) compare
BT0548 -1.5 -1.0 diaminopimelate epimerase (NCBI ptt file) compare
BT0527 -1.5 -3.0 tryptophan synthase alpha chain (NCBI ptt file) compare
BT1851 -1.5 -1.5 TPR-repeat-containing protein (NCBI ptt file) compare
BT1516 -1.5 -1.4 replicative DNA helicase (NCBI ptt file) compare
BT0202 -1.5 -3.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3933 -1.5 -4.1 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT3394 -1.5 -7.7 putative arginine decarboxylase (NCBI ptt file) compare
BT1381 -1.5 -3.4 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT1576 -1.5 -1.4 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT4469 -1.5 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1148 -1.4 -1.7 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT3981 -1.4 -2.5 hypothetical protein (NCBI ptt file) compare
BT0736 -1.4 -1.7 putative transport protein (NCBI ptt file) compare
BT2403 -1.4 -6.3 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2074 -1.4 -5.4 ketol-acid reductoisomerase (NCBI ptt file) compare
BT1222 -1.4 -1.3 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT0322 -1.4 -1.9 putative oxidoreductase (NCBI ptt file) compare
BT1859 -1.4 -2.6 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3733 -1.4 -6.9 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT0533 -1.3 -1.8 tryptophan synthase beta chain (NCBI ptt file) compare
BT0007 -1.3 -1.6 hypothetical protein (NCBI ptt file) compare
BT1976 -1.3 -1.3 hypothetical protein (NCBI ptt file) compare
BT0350 -1.3 -2.5 ribulokinase (EC 2.7.1.16) (from data) compare
BT1733 -1.3 -2.9 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT4452 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0556 -1.3 -2.0 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT3718 -1.3 -5.8 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT1844 -1.3 -3.0 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT4328 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0814 -1.3 -1.2 conserved hypothetical protein, putative outer membrane protein (NCBI ptt file) compare
BT1220 -1.3 -1.2 6-phosphogluconolactonase (NCBI ptt file) compare
BT2292 -1.3 -2.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2080 -1.3 -3.1 L-cysteine desulfidase cdsB (from data) compare
BT2045 -1.3 -1.2 hypothetical protein (NCBI ptt file) compare
BT3182 -1.3 -5.6 rubrerythrin (NCBI ptt file) compare
BT0081 -1.3 -2.0 hypothetical protein (NCBI ptt file) compare
BT0752 -1.3 -1.7 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0417 -1.3 -0.9 hypothetical protein (NCBI ptt file) compare
BT2836 -1.2 -7.2 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT1313 -1.2 -1.2 muconate cycloisomerase (NCBI ptt file) compare
BT2688 -1.2 -2.3 outer membrane efflux protein (NCBI ptt file) compare
BT0751 -1.2 -1.4 putative efflux pump component protein (NCBI ptt file) compare
BT1186 -1.2 -1.4 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0319 -1.2 -1.3 hypothetical protein (NCBI ptt file) compare
BT0860 -1.2 -1.1 putative ABC transporter ATP-binding protein (NCBI ptt file) compare
BT4668 -1.2 -1.6 arabinogalactan endo-1,4-beta-galactosidase (NCBI ptt file) compare
BT1312 -1.2 -2.3 serine protease precursor (NCBI ptt file) compare
BT4674 -1.2 -2.8 hypothetical protein (NCBI ptt file) compare
BT4698 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1221 -1.2 -1.8 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT1747 -1.2 -3.2 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT2696 -1.2 -2.1 hypothetical protein (NCBI ptt file) compare
BT2853 -1.2 -1.2 hypothetical protein (NCBI ptt file) compare
BT2077 -1.2 -4.7 acetolactate synthase large subunit (NCBI ptt file) compare
BT0887 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT4442 -1.2 -1.3 hypothetical protein (NCBI ptt file) compare
BT0353 -1.2 -3.0 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT0323 -1.1 -1.7 hypothetical protein (NCBI ptt file) compare
BT4562 -1.1 -0.8 hypothetical protein (NCBI ptt file) compare
BT4563 -1.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT0846 -1.1 -1.5 hypothetical protein (NCBI ptt file) compare
BT3503 -1.1 -1.3 glutaminase A (NCBI ptt file) compare
BT0878 -1.1 -0.8 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT0936 -1.1 -1.1 hypothetical protein (NCBI ptt file) compare
BT1861 -1.1 -4.1 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT0027 -1.1 -2.1 putative transposase (NCBI ptt file) compare
BT3550 -1.1 -2.8 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT2843 -1.1 -1.5 integrase (NCBI ptt file) compare
BT3839 -1.1 -1.0 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT4113 -1.1 -5.5 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT4676 -1.1 -1.5 putative periplasmic protein (NCBI ptt file) compare
BT3840 -1.1 -1.9 putative RNA-binding protein rbpA (NCBI ptt file) compare
BT1258 -1.1 -1.5 putative acetyltransferase (NCBI ptt file) compare
BT2932 -1.1 -1.3 transcriptional regulator (NCBI ptt file) compare
BT0876 -1.1 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0817 -1.1 -1.3 lipoprotein, function unknown (NCBI ptt file) compare
BT0532 -1.1 -2.6 anthranilate synthase component I (NCBI ptt file) compare
BT0218 -1.1 -1.6 thioredoxin (TRX) (NCBI ptt file) compare
BT4339 -1.1 -1.4 glutamine synthetase (NCBI ptt file) compare
BT0824 -1.1 -2.3 transcriptional regulator (LacI family) (NCBI ptt file) compare
BT3320 -1.1 -3.5 dihydrodipicolinate reductase (NCBI ptt file) compare
BT4672 -1.0 -1.7 hypothetical protein (NCBI ptt file) compare
BT0885 -1.0 -1.0 putative cation efflux pump (NCBI ptt file) compare
BT0481 -1.0 -1.6 polysaccharide export outer membrane protein (NCBI ptt file) compare
BT4191 -1.0 -5.1 hypothetical protein (NCBI ptt file) compare
BT1347 -1.0 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0133 -1.0 -2.7 putative sugar phosphate isomerase (NCBI ptt file) compare
BT0891 -1.0 -1.2 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT1338 -1.0 -2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT3719 -1.0 -2.2 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT1951 -1.0 -1.2 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT1555 -1.0 -2.4 dioxygenase, related to 2-nitropropane dioxygenase (NCBI ptt file) compare
BT0596 -1.0 -0.9 putative transcriptional regulator (NCBI ptt file) compare
BT0437 -1.0 -0.9 N-acylglucosamine 2-epimerase (NCBI ptt file) compare
BT4111 -1.0 -6.6 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) conserved
BT3980 -1.0 -0.9 hypothetical protein (NCBI ptt file) compare
BT0448 -1.0 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1374 -1.0 -2.6 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT1058 -1.0 -5.7 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0786 -1.0 -1.8 putative integral membrane protein (NCBI ptt file) compare
BT4212 -1.0 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0370 -1.0 -2.2 galactokinase (NCBI ptt file) compare
BT0085 -1.0 -1.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0016 -1.0 -1.5 hypothetical protein (NCBI ptt file) compare
BT0004 -1.0 -0.9 hypothetical protein (NCBI ptt file) compare
BT1912 -1.0 -1.1 hypothetical protein (NCBI ptt file) compare
BT1316 -1.0 -1.3 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT1200 -1.0 -1.6 hypothetical protein (NCBI ptt file) compare
BT2142 -1.0 -0.9 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT4593 -1.0 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT3920 -1.0 -0.7 conserved hypothetical protein (NCBI ptt file) compare
BT3371 -1.0 -1.6 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1915 -1.0 -2.4 pyruvate carboxylase subunit A (NCBI ptt file) compare
BT0875 -0.9 -1.9 beta-ureidopropionase (NCBI ptt file) compare
BT1558 -0.9 -1.8 hypothetical protein (NCBI ptt file) compare
BT1933 -0.9 -1.5 transposase (NCBI ptt file) compare
BT4103 -0.9 -1.4 putative Sec-independent protein translocase (NCBI ptt file) compare
BT1112 -0.9 -0.6 transposase (NCBI ptt file) compare
BT3935 -0.9 -2.1 aminotransferase (NCBI ptt file) compare
BT1059 -0.9 -3.0 putative UDP-glucose 4-epimerase (NCBI ptt file) compare
BT0044 -0.9 -1.3 putative glycosyltransferase (NCBI ptt file) compare
BT0793 -0.9 -1.4 xylose isomerase (NCBI ptt file) compare
BT0335 -0.9 -2.7 putative ATPase (NCBI ptt file) compare
BT1970 -0.9 -3.2 glutamate dehydrogenase (NCBI ptt file) compare
BT3907 -0.9 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0528 -0.9 -1.9 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT0704 -0.9 -1.1 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT1557 -0.9 -0.9 hypothetical protein (NCBI ptt file) compare
BT2063 -0.9 -3.2 conserved hypothetical protein, putative iron uptake factor (NCBI ptt file) compare
BT4466 -0.9 -0.8 hypothetical protein (NCBI ptt file) compare
BT1718 -0.9 -3.4 putative 2-aminoethylphosphonate pyruvate aminotransferase (NCBI ptt file) compare
BT0611 -0.9 -1.1 glycosyltransferase (NCBI ptt file) compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source polygalacturonic acid in Bacteroides thetaiotaomicron VPI-5482

For carbon source polygalacturonic acid across organisms