Experiment set3IT042 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sisomicin sulfate salt 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_769 -3.4 -6.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2106 -3.2 -2.2 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2401 -3.0 -3.5 Lipoprotein, putative compare
Pf1N1B4_126 -2.8 -3.3 Pirin compare
Pf1N1B4_5690 -2.7 -4.7 Putative TEGT family carrier/transport protein compare
Pf1N1B4_2283 -2.5 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1307 -2.5 -2.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1315 -2.5 -8.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_5370 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_2949 -2.3 -3.3 FIG00956396: hypothetical protein compare
Pf1N1B4_1626 -2.2 -6.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3559 -2.2 -12.5 Aromatic amino acid transport protein AroP compare
Pf1N1B4_201 -2.2 -3.4 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_419 -2.1 -2.8 Transcriptional regulator, TetR family compare
Pf1N1B4_652 -2.1 -9.9 Sensory box histidine kinase compare
Pf1N1B4_1159 -2.0 -3.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_3246 -2.0 -4.2 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_2004 -1.9 -2.7 putative membrane protein compare
Pf1N1B4_883 -1.9 -2.5 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2105 -1.8 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1870 -1.8 -3.3 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1388 -1.8 -3.9 Azurin compare
Pf1N1B4_2891 -1.8 -3.9 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_644 -1.8 -2.5 Cold shock protein CspC compare
Pf1N1B4_1492 -1.7 -1.6 FIG00959437: hypothetical protein compare
Pf1N1B4_888 -1.7 -4.4 Transglycosylase, Slt family compare
Pf1N1B4_2037 -1.7 -2.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_3768 -1.7 -2.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2861 -1.7 -4.9 glutamyl-Q-tRNA synthetase compare
Pf1N1B4_5899 -1.6 -2.0 FIG00954746: hypothetical protein compare
Pf1N1B4_4640 -1.6 -3.7 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_430 -1.6 -2.5 hypothetical protein compare
Pf1N1B4_2791 -1.6 -2.3 Putative inner membrane protein (Fragment) compare
Pf1N1B4_1 -1.6 -1.7 Colicin V production protein compare
Pf1N1B4_1906 -1.6 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4740 -1.6 -1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_1613 -1.6 -2.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_1614 -1.5 -2.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_224 -1.5 -2.6 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_399 -1.5 -2.3 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1914 -1.5 -4.2 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_958 -1.4 -2.4 Stringent starvation protein B compare
Pf1N1B4_5912 -1.4 -4.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4531 -1.4 -2.7 FIG01221261: hypothetical protein compare
Pf1N1B4_2609 -1.4 -9.3 Catalase (EC 1.11.1.6) compare
Pf1N1B4_5995 -1.4 -2.5 Transporter, MFS superfamily compare
Pf1N1B4_1581 -1.4 -2.9 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_619 -1.4 -2.2 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_535 -1.3 -3.9 FIG00953341: hypothetical protein compare
Pf1N1B4_1827 -1.3 -3.2 FIG00953482: hypothetical protein compare
Pf1N1B4_1399 -1.3 -3.4 FIG003573: hypothetical protein compare
Pf1N1B4_3091 -1.3 -4.0 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4603 -1.3 -2.5 hypothetical protein compare
Pf1N1B4_1610 -1.3 -2.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_3143 -1.3 -2.5 RecA protein compare
Pf1N1B4_2643 -1.3 -2.6 Predicted zinc-binding protein compare
Pf1N1B4_4621 -1.3 -3.6 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_627 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_1749 -1.3 -1.5 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_4699 -1.3 -2.2 Multidrug translocase MdfA compare
Pf1N1B4_2731 -1.3 -2.7 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_3413 -1.2 -1.2 Transcriptional regulator, LysR family compare
Pf1N1B4_3396 -1.2 -1.6 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_1627 -1.2 -2.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2244 -1.2 -2.3 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_5877 -1.2 -2.6 FIG00967533: hypothetical protein compare
Pf1N1B4_4611 -1.2 -2.4 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_476 -1.2 -2.8 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_3264 -1.2 -3.1 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_2456 -1.1 -2.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_2453 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_3334 -1.1 -2.8 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_1844 -1.1 -7.3 Oligopeptidase A (EC 3.4.24.70) compare
Pf1N1B4_1615 -1.1 -2.8 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_2085 -1.1 -2.1 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_3785 -1.1 -1.8 FOG: Ankyrin repeat compare
Pf1N1B4_2048 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_1611 -1.1 -3.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3753 -1.1 -4.2 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3864 -1.1 -4.4 Recombination protein RecR compare
Pf1N1B4_1036 -1.1 -3.0 Signal transduction histidine kinase compare
Pf1N1B4_5666 -1.1 -2.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1406 -1.1 -3.7 Methyl-accepting chemotaxis protein compare
Pf1N1B4_1993 -1.1 -1.2 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4429 -1.0 -1.8 No significant database matches compare
Pf1N1B4_267 -1.0 -1.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_625 -1.0 -3.2 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_4644 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_1869 -1.0 -4.6 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_1247 -1.0 -2.2 transcriptional regulator, MerR family compare
Pf1N1B4_188 -1.0 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_877 -1.0 -4.2 Permeases of the major facilitator superfamily compare
Pf1N1B4_2368 -1.0 -2.8 Malonate transporter, MadL subunit compare
Pf1N1B4_5330 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_5010 -1.0 -4.0 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_544 -1.0 -2.2 Small-conductance mechanosensitive channel compare
Pf1N1B4_3494 -1.0 -1.7 Flavoprotein WrbA compare
Pf1N1B4_3445 -1.0 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_2193 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_578 -1.0 -2.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2223 -1.0 -3.8 FIG006231: RNA-binding protein compare
Pf1N1B4_4532 -1.0 -2.2 ClpB protein compare
Pf1N1B4_4657 -1.0 -2.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_890 -0.9 -2.0 DNA recombination and repair protein RecO compare
Pf1N1B4_2371 -0.9 -3.8 COG1272: Predicted membrane protein hemolysin III homolog compare
Pf1N1B4_4960 -0.9 -1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3531 -0.9 -1.6 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_1872 -0.9 -4.5 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_841 -0.9 -2.8 ABC-type sugar transport systems, ATPase components compare
Pf1N1B4_350 -0.9 -4.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4787 -0.9 -2.8 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_5747 -0.9 -1.3 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_2552 -0.9 -2.2 OsmC/Ohr family protein compare
Pf1N1B4_2739 -0.9 -1.6 acetyltransferase, GNAT family compare
Pf1N1B4_1211 -0.9 -2.2 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1624 -0.9 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3724 -0.9 -3.2 DNA recombination protein RmuC compare
Pf1N1B4_4669 -0.9 -1.6 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_813 -0.9 -4.2 hypothetical protein compare
Pf1N1B4_2493 -0.9 -1.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_5383 -0.9 -4.5 hypothetical protein compare
Pf1N1B4_4667 -0.9 -2.1 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_263 -0.9 -2.2 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf1N1B4_384 -0.9 -1.3 proteinase inhibitor compare
Pf1N1B4_5368 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_2958 -0.9 -1.3 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_3390 -0.9 -1.8 RNA polymerase sigma factor RpoE compare
Pf1N1B4_2935 -0.9 -1.3 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_2270 -0.9 -2.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_2035 -0.9 -3.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_1389 -0.9 -1.9 Lysine decarboxylase family compare
Pf1N1B4_3492 -0.8 -2.8 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf1N1B4_5124 -0.8 -2.9 two component transcriptional regulator, LuxR family compare
Pf1N1B4_2427 -0.8 -1.5 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_1234 -0.8 -2.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4949 -0.8 -2.0 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_5853 -0.8 -1.9 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_5420 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_906 -0.8 -2.1 Glutaredoxin NrdH compare
Pf1N1B4_4218 -0.8 -1.7 Multidrug resistance protein A compare
Pf1N1B4_2208 -0.8 -3.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_124 -0.8 -1.8 Mechanosensitive ion channel compare
Pf1N1B4_1812 -0.8 -2.0 Iron siderophore sensor protein compare
Pf1N1B4_1279 -0.8 -1.7 Flp pilus assembly protein TadB compare
Pf1N1B4_1927 -0.8 -4.3 DNA recombination and repair protein RecF compare
Pf1N1B4_1052 -0.8 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3627 -0.8 -1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_2959 -0.8 -2.7 FIG067310: hypothetical protein compare
Pf1N1B4_4448 -0.8 -1.6 COGs COG2343 compare
Pf1N1B4_3330 -0.8 -2.7 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf1N1B4_5435 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_2282 -0.8 -4.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4592 -0.8 -1.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_364 -0.8 -2.2 Rhodanese domain protein UPF0176 compare
Pf1N1B4_3626 -0.8 -2.8 RNA polymerase sigma factor for flagellar operon compare
Pf1N1B4_2354 -0.8 -2.9 twitching motility protein PilH compare
Pf1N1B4_5533 -0.8 -1.9 cobS protein, putative compare
Pf1N1B4_5279 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_260 -0.8 -2.6 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_164 -0.8 -1.6 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_1090 -0.8 -3.1 TldE protein, part of TldE/TldD proteolytic complex compare
Pf1N1B4_1430 -0.8 -1.7 Predicted signal transduction protein compare
Pf1N1B4_4320 -0.8 -1.7 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_764 -0.8 -2.8 Uncharacterized isomerase yddE, PhzC-PhzF family compare
Pf1N1B4_437 -0.8 -3.4 hypothetical protein compare
Pf1N1B4_2458 -0.8 -2.0 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_5102 -0.8 -3.1 Putative glutathione transporter, permease component compare
Pf1N1B4_2768 -0.8 -2.1 DNA repair protein RadA compare
Pf1N1B4_2005 -0.8 -1.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1998 -0.8 -1.9 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf1N1B4_2940 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_1540 -0.8 -1.8 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_165 -0.8 -1.2 FIG00638667: hypothetical protein compare
Pf1N1B4_844 -0.8 -2.4 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_1263 -0.8 -1.6 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_4004 -0.8 -0.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_1661 -0.8 -2.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_239 -0.8 -2.1 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_3789 -0.8 -2.2 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_4362 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_2474 -0.7 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4972 -0.7 -1.4 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_3141 -0.7 -1.3 FIG00959768: hypothetical protein compare
Pf1N1B4_1975 -0.7 -1.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_4482 -0.7 -1.9 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_4602 -0.7 -1.1 Transcriptional regulators, LysR family compare
Pf1N1B4_2611 -0.7 -5.0 Excinuclease ABC subunit A compare
Pf1N1B4_3328 -0.7 -1.4 Rhodanese-like domain protein compare
Pf1N1B4_1573 -0.7 -2.6 Glucans biosynthesis protein G precursor compare
Pf1N1B4_1762 -0.7 -2.0 FIG00957387: hypothetical protein compare
Pf1N1B4_799 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_5387 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_1617 -0.7 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3078 -0.7 -1.4 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_4976 -0.7 -2.6 D-serine/D-alanine/glycine transporter compare
Pf1N1B4_3363 -0.7 -3.2 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_403 -0.7 -1.0 FIG00965925: hypothetical protein compare
Pf1N1B4_4326 -0.7 -1.6 N-carbamoylputrescine amidase (3.5.1.53) compare
Pf1N1B4_4450 -0.7 -2.7 Choline dehydrogenase (EC 1.1.99.1) compare
Pf1N1B4_4969 -0.7 -1.4 FIG00956189: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress Sisomicin sulfate salt across organisms