Experiment set3IT042 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.4 -12.1 S41 family peptidase compare
PFLU_RS28695 -5.1 -3.5 phosphoglycerate dehydrogenase compare
PFLU_RS03645 -5.0 -15.6 tetratricopeptide repeat protein compare
PFLU_RS20690 -4.1 -5.6 hypothetical protein compare
PFLU_RS26545 -4.0 -14.5 sel1 repeat family protein compare
PFLU_RS02490 -4.0 -12.4 phosphoserine phosphatase SerB compare
PFLU_RS29880 -3.8 -14.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29875 -3.8 -16.3 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS25760 -3.7 -12.6 glucose-6-phosphate isomerase compare
PFLU_RS22095 -3.6 -20.3 GTP diphosphokinase compare
PFLU_RS29095 -3.6 -25.1 polyphosphate kinase 1 compare
PFLU_RS24125 -3.6 -6.4 cold-shock protein compare
PFLU_RS14550 -3.5 -10.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS22595 -3.5 -2.4 OmpA family protein compare
PFLU_RS23585 -3.5 -9.7 GntP family permease compare
PFLU_RS29885 -3.3 -12.4 LysR family transcriptional regulator compare
PFLU_RS23070 -3.2 -1.8 50S ribosomal protein L32 compare
PFLU_RS12975 -3.2 -6.3 DUF934 domain-containing protein compare
PFLU_RS22740 -3.2 -5.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS22070 -3.1 -5.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS25735 -3.0 -7.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28195 -2.9 -15.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS28535 -2.9 -15.9 dihydroxy-acid dehydratase compare
PFLU_RS00180 -2.9 -8.4 tryptophan synthase subunit beta compare
PFLU_RS02365 -2.8 -13.9 glycosyltransferase compare
PFLU_RS24330 -2.8 -6.6 phosphogluconate dehydratase compare
PFLU_RS30160 -2.8 -3.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS09055 -2.7 -4.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23725 -2.7 -12.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS28655 -2.7 -14.2 HAD family hydrolase compare
PFLU_RS08165 -2.7 -2.5 acyl carrier protein compare
PFLU_RS04470 -2.6 -12.1 histidinol dehydrogenase compare
PFLU_RS18505 -2.6 -10.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS30345 -2.6 -3.0 DUF2559 family protein compare
PFLU_RS26640 -2.6 -10.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS01625 -2.6 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS12980 -2.6 -10.6 nitrite/sulfite reductase compare
PFLU_RS27365 -2.6 -8.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS23065 -2.6 -10.9 phosphate acyltransferase PlsX compare
PFLU_RS25755 -2.5 -3.8 pantoate--beta-alanine ligase compare
PFLU_RS06055 -2.5 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08505 -2.5 -8.4 protease HtpX compare
PFLU_RS06870 -2.5 -10.2 GNAT family N-acetyltransferase compare
PFLU_RS08155 -2.5 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS27630 -2.5 -7.2 dethiobiotin synthase compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29515 -2.5 -11.8 RidA family protein compare
PFLU_RS03970 -2.5 -10.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS22105 -2.4 -6.1 cysteine synthase CysM compare
PFLU_RS18635 -2.4 -1.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS20515 -2.4 -3.6 amidophosphoribosyltransferase compare
PFLU_RS25750 -2.4 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23305 -2.3 -10.6 arginine N-succinyltransferase compare
PFLU_RS00175 -2.3 -9.2 tryptophan synthase subunit alpha compare
PFLU_RS25640 -2.3 -11.7 ketol-acid reductoisomerase compare
PFLU_RS24485 -2.3 -10.2 hypothetical protein compare
PFLU_RS28650 -2.3 -7.2 RNA pyrophosphohydrolase compare
PFLU_RS08160 -2.2 -8.2 sugar transferase compare
PFLU_RS24025 -2.2 -10.9 quinolinate synthase NadA compare
PFLU_RS20520 -2.2 -9.5 colicin V production protein CvpA compare
PFLU_RS18615 -2.2 -2.5 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24095 -2.2 -2.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS27645 -2.2 -12.0 8-amino-7-oxononanoate synthase compare
PFLU_RS07785 -2.2 -10.8 VacJ family lipoprotein compare
PFLU_RS04660 -2.2 -6.2 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS23310 -2.2 -9.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23590 -2.2 -2.4 gluconokinase compare
PFLU_RS27635 -2.2 -9.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS04465 -2.2 -9.2 ATP phosphoribosyltransferase compare
PFLU_RS20540 -2.2 -10.8 phosphoribosylanthranilate isomerase compare
PFLU_RS01900 -2.2 -8.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04715 -2.2 -6.1 D-alanine--D-alanine ligase compare
PFLU_RS23185 -2.1 -12.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS07695 -2.1 -3.6 beta-N-acetylhexosaminidase compare
PFLU_RS27650 -2.1 -11.8 biotin synthase BioB compare
PFLU_RS21360 -2.1 -2.7 MarR family transcriptional regulator compare
PFLU_RS01605 -2.1 -8.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27370 -2.1 -9.7 anthranilate phosphoribosyltransferase compare
PFLU_RS04070 -2.1 -5.8 peptide chain release factor 3 compare
PFLU_RS20575 -2.0 -5.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS24085 -2.0 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS04435 -2.0 -6.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS03770 -2.0 -11.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS25360 -2.0 -5.8 glutamate 5-kinase compare
PFLU_RS01960 -2.0 -1.3 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS01620 -2.0 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28310 -1.9 -2.1 response regulator compare
PFLU_RS28165 -1.9 -10.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01485 -1.9 -10.8 cellulase compare
PFLU_RS18530 -1.9 -4.7 DNA translocase FtsK compare
PFLU_RS01965 -1.9 -1.8 ATP-dependent protease subunit HslV compare
PFLU_RS02590 -1.9 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS13540 -1.9 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25730 -1.9 -13.2 PAS domain S-box protein compare
PFLU_RS26770 -1.9 -10.3 DedA family protein compare
PFLU_RS24335 -1.8 -11.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS21300 -1.8 -6.2 cysteine hydrolase compare
PFLU_RS04440 -1.8 -8.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS21495 -1.8 -3.1 TlpA family protein disulfide reductase compare
PFLU_RS10430 -1.8 -3.1 peptidase compare
PFLU_RS25645 -1.7 -1.2 acetolactate synthase small subunit compare
PFLU_RS14420 -1.7 -3.5 chemotactic transduction protein ChpE compare
PFLU_RS25225 -1.7 -8.5 disulfide bond formation protein B compare
PFLU_RS07275 -1.7 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS24090 -1.7 -2.8 Holliday junction branch migration protein RuvA compare
PFLU_RS28645 -1.7 -10.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07650 -1.7 -10.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04445 -1.7 -6.0 ABC transporter substrate-binding protein compare
PFLU_RS04325 -1.7 -11.7 ribonuclease G compare
PFLU_RS29745 -1.7 -2.9 response regulator compare
PFLU_RS05385 -1.6 -9.7 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS19175 -1.6 -5.9 trigger factor compare
PFLU_RS09980 -1.6 -11.4 peptidase S41 compare
PFLU_RS28965 -1.6 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS06555 -1.6 -7.7 OmpA family protein compare
PFLU_RS13485 -1.6 -10.6 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS19730 -1.6 -2.4 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS04430 -1.6 -7.0 ATP-binding cassette domain-containing protein compare
PFLU_RS31590 -1.6 -1.8 hypothetical protein compare
PFLU_RS03995 -1.6 -1.5 hypothetical protein compare
PFLU_RS27440 -1.6 -6.6 nucleotidyltransferase family protein compare
PFLU_RS26905 -1.6 -8.2 transcriptional regulator NrdR compare
PFLU_RS03765 -1.6 -8.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS07685 -1.6 -3.0 transcriptional repressor LexA compare
PFLU_RS25920 -1.5 -2.8 outer membrane protein assembly factor BamE compare
PFLU_RS20580 -1.5 -8.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS29280 -1.5 -5.5 tyrosine recombinase XerC compare
PFLU_RS23920 -1.5 -1.8 septation protein A compare
PFLU_RS25740 -1.5 -4.9 polynucleotide adenylyltransferase PcnB compare
PFLU_RS28725 -1.5 -8.3 DUF2059 domain-containing protein compare
PFLU_RS30790 -1.5 -2.2 hypothetical protein compare
PFLU_RS21060 -1.4 -4.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS27805 -1.4 -2.5 sarcosine oxidase subunit gamma family protein compare
PFLU_RS01910 -1.4 -1.4 sterol-binding protein compare
PFLU_RS30165 -1.4 -6.5 ParA family protein compare
PFLU_RS25815 -1.4 -1.8 transcription termination/antitermination protein NusA compare
PFLU_RS07225 -1.4 -9.6 L-aspartate oxidase compare
PFLU_RS23460 -1.4 -1.8 antibiotic biosynthesis monooxygenase compare
PFLU_RS01895 -1.4 -4.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21985 -1.4 -4.0 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS29550 -1.4 -6.4 ATP-dependent DNA helicase RecG compare
PFLU_RS22030 -1.4 -2.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS02790 -1.4 -1.0 TetR family transcriptional regulator compare
PFLU_RS30865 -1.4 -3.4 transposase compare
PFLU_RS24255 -1.4 -7.5 pyruvate kinase compare
PFLU_RS25715 -1.4 -7.3 RNA polymerase-binding protein DksA compare
PFLU_RS08410 -1.3 -5.6 HTH-type transcriptional regulator CysB compare
PFLU_RS20565 -1.3 -8.2 3-isopropylmalate dehydrogenase compare
PFLU_RS08065 -1.3 -6.6 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS18250 -1.3 -2.9 DUF2160 domain-containing protein compare
PFLU_RS13370 -1.3 -1.5 DUF2790 domain-containing protein compare
PFLU_RS18885 -1.3 -2.2 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS18640 -1.3 -3.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS15420 -1.3 -2.6 hypothetical protein compare
PFLU_RS08260 -1.3 -3.5 CHAD domain-containing protein compare
PFLU_RS24785 -1.3 -6.4 outer membrane protein assembly factor BamB compare
PFLU_RS07805 -1.3 -9.2 transaldolase compare
PFLU_RS18665 -1.3 -2.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS21645 -1.2 -5.1 chemotaxis protein CheA compare
PFLU_RS26735 -1.2 -6.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS22395 -1.2 -3.5 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS08760 -1.2 -2.6 phosphonate C-P lyase system protein PhnG compare
PFLU_RS18670 -1.2 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS30390 -1.2 -2.0 type III secretion system rspB compare
PFLU_RS09495 -1.2 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS21215 -1.2 -1.4 YheU family protein compare
PFLU_RS14820 -1.2 -3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS03610 -1.2 -4.2 redox-regulated ATPase YchF compare
PFLU_RS31490 -1.2 -1.3 hypothetical protein compare
PFLU_RS02460 -1.2 -7.0 alpha/beta fold hydrolase compare
PFLU_RS24765 -1.1 -8.5 2-isopropylmalate synthase compare
PFLU_RS21615 -1.1 -6.1 chemotaxis protein CheW compare
PFLU_RS05655 -1.1 -1.8 DeoR/GlpR family transcriptional regulator compare
PFLU_RS25040 -1.1 -2.1 DUF3077 domain-containing protein compare
PFLU_RS26595 -1.1 -1.5 lipoprotein compare
PFLU_RS18675 -1.1 -2.2 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS11525 -1.1 -2.8 GntR family transcriptional regulator compare
PFLU_RS29155 -1.1 -2.6 mechanosensitive ion channel family protein compare
PFLU_RS02975 -1.1 -4.1 precorrin-3B synthase compare
PFLU_RS04315 -1.1 -2.0 rod shape-determining protein MreD compare
PFLU_RS28320 -1.1 -1.8 glutathione synthase compare
PFLU_RS29900 -1.1 -6.8 DNA helicase II compare
PFLU_RS02370 -1.1 -6.3 glycosyltransferase compare
PFLU_RS30510 -1.1 -3.3 glycosyltransferase family 4 protein compare
PFLU_RS01095 -1.1 -2.5 ribbon-helix-helix protein, CopG family compare
PFLU_RS13050 -1.1 -4.0 VWA domain-containing protein compare
PFLU_RS04385 -1.1 -5.8 RNase adapter RapZ compare
PFLU_RS22045 -1.1 -4.9 peptidase P60 compare
PFLU_RS29275 -1.1 -4.1 DUF484 family protein compare
PFLU_RS25800 -1.1 -3.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS01285 -1.1 -1.2 HAMP domain-containing protein compare
PFLU_RS21995 -1.1 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS00310 -1.1 -1.4 twin transmembrane helix small protein compare
PFLU_RS11980 -1.0 -4.3 precorrin-6A synthase (deacetylating) compare
PFLU_RS23240 -1.0 -6.7 magnesium transporter compare
PFLU_RS03100 -1.0 -1.7 hypothetical protein compare
PFLU_RS17495 -1.0 -2.0 hypothetical protein compare
PFLU_RS28265 -1.0 -1.9 malonate decarboxylase subunit delta compare
PFLU_RS01610 -1.0 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20285 -1.0 -3.9 MerR family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For carbon source D-Glucose across organisms