Experiment set3IT042 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -5.0 -7.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06355 -4.3 -6.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06680 -4.0 -20.5 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06685 -3.9 -17.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08790 -3.9 -5.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS06700 -3.9 -20.8 hypothetical protein compare
MMP_RS06350 -3.8 -14.8 HesA/MoeB/ThiF family protein compare
MMP_RS01985 -3.8 -13.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01385 -3.8 -1.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06720 -3.7 -18.9 response regulator transcription factor compare
MMP_RS06715 -3.7 -26.3 cache domain-containing protein compare
MMP_RS06345 -3.5 -18.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02010 -3.5 -13.0 PHP domain-containing protein compare
MMP_RS03015 -3.5 -14.9 GTP 3' 8-cyclase MoaA compare
MMP_RS01500 -3.5 -4.2 CBS domain-containing protein compare
MMP_RS05515 -3.2 -12.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07635 -3.0 -9.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08300 -3.0 -3.2 metal-sulfur cluster assembly factor compare
MMP_RS06705 -2.9 -15.4 formate/nitrite transporter family protein compare
MMP_RS01020 -2.9 -2.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS00895 -2.9 -10.4 hypothetical protein compare
MMP_RS06625 -2.9 -6.3 DNA primase compare
MMP_RS01225 -2.9 -9.8 DUF5379 domain-containing protein compare
MMP_RS08715 -2.8 -5.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08820 -2.8 -9.8 hypothetical protein compare
MMP_RS06230 -2.7 -5.0 helix-turn-helix domain-containing protein compare
MMP_RS02135 -2.7 -6.7 DUF5612 domain-containing protein compare
MMP_RS04585 -2.7 -14.6 AIR synthase related protein compare
MMP_RS00305 -2.7 -3.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS02195 -2.7 -5.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07605 -2.6 -4.9 diadenylate cyclase compare
MMP_RS07445 -2.6 -6.7 helix-turn-helix domain-containing protein compare
MMP_RS07005 -2.6 -1.7 4Fe-4S binding protein compare
MMP_RS03315 -2.6 -2.8 ferrous iron transport protein A compare
MMP_RS01830 -2.6 -4.2 tRNA-Val compare
MMP_RS06295 -2.6 -10.1 methanogenesis marker 14 protein compare
MMP_RS09020 -2.6 -4.4 hypothetical protein compare
MMP_RS07845 -2.5 -5.8 LL-diaminopimelate aminotransferase compare
MMP_RS03960 -2.5 -2.5 hypothetical protein compare
MMP_RS04710 -2.5 -4.0 hypothetical protein compare
MMP_RS00685 -2.5 -7.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05550 -2.5 -1.6 cation:proton antiporter compare
MMP_RS06840 -2.4 -1.9 DNA-directed RNA polymerase subunit N compare
MMP_RS06630 -2.4 -2.9 UPF0058 family protein compare
MMP_RS02355 -2.4 -6.3 30S ribosomal protein S27ae compare
MMP_RS02190 -2.4 -5.3 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS03435 -2.4 -4.3 ketol-acid reductoisomerase compare
MMP_RS04780 -2.4 -5.1 ribonuclease P compare
MMP_RS00300 -2.4 -1.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01005 -2.3 -3.8 riboflavin synthase compare
MMP_RS03025 -2.3 -7.6 molybdenum cofactor guanylyltransferase compare
MMP_RS02800 -2.3 -7.1 nucleotidyltransferase domain-containing protein compare
MMP_RS07750 -2.3 -8.4 DUF357 domain-containing protein compare
MMP_RS01610 -2.3 -6.3 hypothetical protein compare
MMP_RS06120 -2.2 -5.4 UPF0147 family protein compare
MMP_RS06400 -2.2 -3.2 4Fe-4S binding protein compare
MMP_RS01755 -2.2 -3.2 DUF2097 domain-containing protein compare
MMP_RS01220 -2.1 -9.7 hypothetical protein compare
MMP_RS06270 -2.1 -7.2 TIGR00300 family protein compare
MMP_RS03640 -2.1 -5.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03475 -2.1 -1.5 hypothetical protein compare
MMP_RS00110 -2.1 -6.0 hypothetical protein compare
MMP_RS08745 -2.1 -9.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06340 -2.1 -11.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04685 -2.1 -4.7 DUF126 domain-containing protein compare
MMP_RS04775 -2.1 -6.3 adenosylhomocysteinase compare
MMP_RS03035 -2.1 -3.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05845 -2.1 -3.0 tRNA-intron lyase compare
MMP_RS00695 -2.0 -1.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04890 -2.0 -1.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07580 -2.0 -6.6 DUF356 domain-containing protein compare
MMP_RS06200 -2.0 -14.1 M24 family metallopeptidase compare
MMP_RS08720 -1.9 -2.5 4Fe-4S binding protein compare
MMP_RS02345 -1.9 -5.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01800 -1.9 -6.5 TIGR00303 family protein compare
MMP_RS02165 -1.9 -13.7 tRNA-dihydrouridine synthase compare
MMP_RS06475 -1.9 -7.3 FAD-dependent oxidoreductase compare
MMP_RS06315 -1.9 -2.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01265 -1.9 -3.8 hypothetical protein compare
MMP_RS06285 -1.9 -4.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00320 -1.8 -3.7 class I SAM-dependent methyltransferase compare
MMP_RS06885 -1.8 -2.9 50S ribosome-binding GTPase compare
MMP_RS02875 -1.8 -10.0 chorismate pyruvate-lyase family protein compare
MMP_RS06925 -1.8 -3.6 ribonuclease VapC4 compare
MMP_RS01725 -1.8 -5.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS05555 -1.8 -2.8 DUF4040 domain-containing protein compare
MMP_RS01250 -1.8 -8.2 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06895 -1.8 -2.5 selenocysteine-specific translation elongation factor compare
MMP_RS05815 -1.7 -8.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08435 -1.7 -4.2 Era-like GTP-binding protein compare
MMP_RS07630 -1.7 -2.7 ATP-binding cassette domain-containing protein compare
MMP_RS07755 -1.7 -1.6 DUF555 domain-containing protein compare
MMP_RS00115 -1.7 -11.9 radical SAM protein compare
MMP_RS02240 -1.7 -6.1 methanogenesis marker 7 protein compare
MMP_RS03400 -1.7 -5.2 archease compare
MMP_RS04605 -1.6 -3.7 cobalt ECF transporter T component CbiQ compare
MMP_RS08460 -1.6 -2.7 proteasome-activating nucleotidase compare
MMP_RS03600 -1.6 -2.6 triose-phosphate isomerase compare
MMP_RS03095 -1.6 -8.3 diphthine synthase compare
MMP_RS05430 -1.6 -4.9 TIGR00288 family NYN domain-containing protein compare
MMP_RS01325 -1.6 -3.8 dihydroneopterin aldolase family protein compare
MMP_RS05540 -1.6 -4.4 hypothetical protein compare
MMP_RS07380 -1.6 -3.1 transcription elongation factor Spt5 compare
MMP_RS08100 -1.5 -9.2 8-amino-7-oxononanoate synthase compare
MMP_RS06730 -1.5 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS03155 -1.5 -8.5 precorrin-6A reductase compare
MMP_RS00810 -1.5 -8.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS06105 -1.5 -9.0 hydrogenase maturation peptidase HycI compare
MMP_RS05920 -1.5 -1.3 50S ribosomal protein L37e compare
MMP_RS03140 -1.5 -10.1 hypothetical protein compare
MMP_RS08210 -1.5 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS02235 -1.5 -9.4 CBS domain-containing protein compare
MMP_RS07735 -1.4 -1.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05345 -1.4 -6.7 hypothetical protein compare
MMP_RS05545 -1.4 -7.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04500 -1.4 -11.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03145 -1.4 -8.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02340 -1.4 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01365 -1.4 -3.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04615 -1.4 -6.0 PDGLE domain-containing protein compare
MMP_RS08105 -1.4 -6.8 6-carboxyhexanoate--CoA ligase compare
MMP_RS08635 -1.4 -1.8 UbiA family prenyltransferase compare
MMP_RS07600 -1.4 -4.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06130 -1.4 -5.3 peptidylprolyl isomerase compare
MMP_RS06370 -1.4 -6.8 biotin synthase BioB compare
MMP_RS05875 -1.4 -8.3 hydroxyethylthiazole kinase compare
MMP_RS08440 -1.4 -4.5 cell division protein SepF compare
MMP_RS04870 -1.4 -4.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS08785 -1.3 -2.4 RNA-protein complex protein Nop10 compare
MMP_RS03110 -1.3 -6.9 glycosyltransferase family 2 protein compare
MMP_RS08320 -1.3 -8.4 molybdopterin molybdotransferase MoeA compare
MMP_RS02245 -1.3 -4.9 hypothetical protein compare
MMP_RS08095 -1.3 -6.5 dethiobiotin synthase compare
MMP_RS07730 -1.3 -2.8 pyruvate synthase subunit beta compare
MMP_RS07685 -1.3 -7.9 TIGR01212 family radical SAM protein compare
MMP_RS03305 -1.3 -9.1 winged helix-turn-helix domain-containing protein compare
MMP_RS02885 -1.2 -10.4 molybdopterin biosynthesis protein compare
MMP_RS03700 -1.2 -6.8 sodium:proton antiporter compare
MMP_RS07200 -1.2 -6.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07425 -1.2 -5.7 GTP-binding protein compare
MMP_RS07420 -1.2 -4.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07575 -1.2 -3.0 RNA ligase partner protein compare
MMP_RS07350 -1.2 -2.2 preprotein translocase subunit Sec61beta compare
MMP_RS06020 -1.2 -5.9 archaeoflavoprotein AfpA compare
MMP_RS08645 -1.2 -7.1 UPF0179 family protein compare
MMP_RS01700 -1.2 -1.5 dihydroxy-acid dehydratase compare
MMP_RS05250 -1.2 -3.1 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07645 -1.2 -8.0 aldehyde dehydrogenase family protein compare
MMP_RS01795 -1.2 -2.1 methanogenesis marker 6 protein compare
MMP_RS00060 -1.1 -1.1 3-dehydroquinate synthase II compare
MMP_RS05925 -1.1 -4.6 small nuclear ribonucleoprotein compare
MMP_RS03580 -1.1 -3.6 signal recognition particle-docking protein FtsY compare
MMP_RS08330 -1.1 -6.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS05265 -1.1 -2.7 2-isopropylmalate synthase compare
MMP_RS02900 -1.1 -1.0 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00985 -1.1 -5.5 CDC48 family AAA ATPase compare
MMP_RS05445 -1.1 -7.4 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS02280 -1.1 -1.2 DUF211 domain-containing protein compare
MMP_RS04875 -1.1 -5.1 energy-converting hydrogenase B subunit P compare
MMP_RS00120 -1.1 -3.2 LysR family transcriptional regulator compare
MMP_RS07545 -1.0 -1.4 HTH domain-containing protein compare
MMP_RS07525 -1.0 -6.0 4Fe-4S binding protein compare
MMP_RS08240 -1.0 -6.1 methanogenesis marker 16 metalloprotein compare
MMP_RS07190 -1.0 -5.7 chromosome segregation protein SMC compare
MMP_RS00520 -1.0 -2.1 RNA polymerase Rpb4 family protein compare
MMP_RS07195 -1.0 -6.7 M20 family metallo-hydrolase compare
MMP_RS07390 -1.0 -2.2 cell division protein FtsZ compare
MMP_RS01840 -1.0 -6.3 TIGR00289 family protein compare
MMP_RS01665 -1.0 -3.0 DUF2111 domain-containing protein compare
MMP_RS07790 -1.0 -7.0 segregation/condensation protein A compare
MMP_RS03250 -0.9 -3.3 MJ1244 family protein compare
MMP_RS00750 -0.9 -2.7 fumarate hydratase compare
MMP_RS05425 -0.9 -4.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06980 -0.9 -4.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS02130 -0.9 -3.2 zinc metalloprotease HtpX compare
MMP_RS00295 -0.9 -2.8 gamma carbonic anhydrase family protein compare
MMP_RS00325 -0.9 -1.5 RNA-binding protein compare
MMP_RS03445 -0.9 -1.5 methanogenesis marker 17 protein compare
MMP_RS08445 -0.9 -2.9 DUF2099 family protein compare
MMP_RS05525 -0.9 -5.0 calcium/sodium antiporter compare
MMP_RS05930 -0.9 -3.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS01195 -0.9 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08165 -0.9 -1.8 phosphoglycerate dehydrogenase compare
MMP_RS00050 -0.9 -5.2 AarF/UbiB family protein compare
MMP_RS00900 -0.8 -2.4 50S ribosomal protein L39e compare
MMP_RS00720 -0.8 -5.3 metal-dependent hydrolase compare
MMP_RS05640 -0.8 -5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05850 -0.8 -2.5 Ldh family oxidoreductase compare
MMP_RS09055 -0.8 -1.4 CAP domain-containing protein compare
MMP_RS07555 -0.8 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS04955 -0.8 -3.9 DNA topoisomerase I compare
MMP_RS05450 -0.8 -3.0 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS03205 -0.8 -1.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01380 -0.8 -2.0 PHP domain-containing protein compare
MMP_RS07960 -0.8 -6.2 sugar phosphate isomerase/epimerase compare
MMP_RS01335 -0.8 -2.2 prefoldin subunit beta compare
MMP_RS06215 -0.8 -3.5 30S ribosomal protein S6e compare
MMP_RS06865 -0.8 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS04620 -0.8 -3.7 cobalt transporter CbiM compare
MMP_RS08070 -0.7 -4.5 DUF2096 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in rich t1 experiments