Experiment set3IT042 for Methanococcus maripaludis JJ

Compare to:

formate McAA pyroxidine HCl dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.6 -21.6 hypothetical protein compare
MMJJ_RS06695 -5.3 -3.6 amidohydrolase compare
MMJJ_RS05445 -5.1 -3.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07360 -5.0 -2.8 TIGR00269 family protein compare
MMJJ_RS06875 -5.0 -4.8 hypothetical protein compare
MMJJ_RS05450 -4.7 -19.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS07705 -4.7 -3.2 GTP-binding protein EngB compare
MMJJ_RS01935 -4.7 -5.5 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04200 -4.7 -8.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06860 -4.5 -6.4 hypothetical protein compare
MMJJ_RS00215 -4.5 -3.1 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04050 -4.4 -3.3 dihydroneopterin aldolase family protein compare
MMJJ_RS03760 -4.3 -5.1 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03200 -4.2 -2.9 uroporphyrinogen-III synthase compare
MMJJ_RS03840 -4.2 -4.0 DHH family phosphoesterase compare
MMJJ_RS01750 -4.2 -4.0 ferrous iron transport protein A compare
MMJJ_RS03820 -4.2 -4.9 hydrogenase formation protein HypD compare
MMJJ_RS03580 -4.1 -4.9 TIGR00303 family protein compare
MMJJ_RS03110 -4.0 -5.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08250 -4.0 -8.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS03270 -4.0 -3.9 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00275 -4.0 -3.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06255 -4.0 -7.5 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03895 -3.9 -4.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS07670 -3.9 -19.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS05260 -3.9 -8.5 ATP-grasp domain-containing protein compare
MMJJ_RS06485 -3.8 -4.5 phosphoglycerate kinase compare
MMJJ_RS07665 -3.8 -21.8 formate dehydrogenase subunit alpha compare
MMJJ_RS06490 -3.8 -4.5 methanogenesis marker 2 protein compare
MMJJ_RS01755 -3.8 -2.6 ferrous iron transport protein B compare
MMJJ_RS05535 -3.8 -13.8 hypothetical protein compare
MMJJ_RS00270 -3.8 -5.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS01600 -3.8 -4.4 radical SAM protein compare
MMJJ_RS02920 -3.7 -3.7 30S ribosomal protein S27ae compare
MMJJ_RS06855 -3.7 -2.9 DUF2104 domain-containing protein compare
MMJJ_RS07000 -3.7 -2.8 TrkH family potassium uptake protein compare
MMJJ_RS06910 -3.7 -4.3 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS00450 -3.7 -2.9 DUF126 domain-containing protein compare
MMJJ_RS08625 -3.7 -8.1 magnesium/cobalt transporter CorA compare
MMJJ_RS03055 -3.7 -3.9 hypothetical protein compare
MMJJ_RS03615 -3.7 -4.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03620 -3.6 -8.0 DUF2097 domain-containing protein compare
MMJJ_RS08020 -3.5 -10.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS02090 -3.5 -8.3 tyramine--L-glutamate ligase compare
MMJJ_RS08320 -3.5 -3.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05330 -3.5 -3.3 DNA polymerase II large subunit compare
MMJJ_RS05930 -3.4 -3.6 cell division protein SepF compare
MMJJ_RS07655 -3.4 -15.5 hypothetical protein compare
MMJJ_RS07720 -3.3 -3.0 UPF0058 family protein compare
MMJJ_RS06725 -3.3 -15.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05620 -3.3 -5.8 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05650 -3.3 -4.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS04685 -3.3 -11.8 carbamoyltransferase HypF compare
MMJJ_RS08330 -3.3 -4.5 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00560 -3.3 -5.3 homoisocitrate dehydrogenase compare
MMJJ_RS03865 -3.2 -2.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS03005 -3.2 -5.2 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03670 -3.2 -6.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08005 -3.2 -17.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS08000 -3.2 -11.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS06840 -3.2 -5.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04520 -3.1 -7.7 coenzyme F430 synthase compare
MMJJ_RS02045 -3.1 -4.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03125 -3.1 -6.2 GMC oxidoreductase compare
MMJJ_RS00210 -3.1 -3.6 DUF530 family protein compare
MMJJ_RS06805 -3.1 -4.1 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06915 -3.1 -14.6 helix-turn-helix domain-containing protein compare
MMJJ_RS03095 -3.0 -4.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS01475 -3.0 -3.4 signal recognition particle-docking protein FtsY compare
MMJJ_RS03815 -3.0 -3.3 nascent polypeptide-associated complex protein compare
MMJJ_RS03785 -3.0 -4.0 hypothetical protein compare
MMJJ_RS08055 -3.0 -7.6 methanogenesis marker 14 protein compare
MMJJ_RS06375 -3.0 -5.1 UbiX family flavin prenyltransferase compare
MMJJ_RS01810 -3.0 -2.6 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06180 -2.9 -4.0 tryptophan--tRNA ligase compare
MMJJ_RS00355 -2.9 -4.6 ribonuclease P protein component 4 compare
MMJJ_RS05575 -2.9 -6.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS05720 -2.9 -3.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06175 -2.9 -4.0 DUF1743 domain-containing protein compare
MMJJ_RS00520 -2.9 -7.4 PDGLE domain-containing protein compare
MMJJ_RS01865 -2.9 -6.7 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS05950 -2.9 -4.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS06625 -2.9 -3.2 pyruvate synthase subunit PorB compare
MMJJ_RS01345 -2.8 -5.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00580 -2.8 -2.4 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08080 -2.8 -9.8 TIGR00300 family protein compare
MMJJ_RS03295 -2.8 -13.3 PHP domain-containing protein compare
MMJJ_RS02275 -2.8 -4.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03830 -2.8 -10.6 CBS domain-containing protein compare
MMJJ_RS01690 -2.8 -4.7 methanogenesis marker 12 protein compare
MMJJ_RS03190 -2.8 -3.7 phosphopyruvate hydratase compare
MMJJ_RS03150 -2.8 -8.2 2-phospho-L-lactate transferase compare
MMJJ_RS05415 -2.8 -2.6 hypothetical protein compare
MMJJ_RS06040 -2.8 -5.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01200 -2.8 -3.6 PRC-barrel domain-containing protein compare
MMJJ_RS07380 -2.7 -10.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS04800 -2.7 -6.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03875 -2.7 -6.2 CBS domain-containing protein compare
MMJJ_RS03060 -2.7 -3.9 methanogenesis marker 7 protein compare
MMJJ_RS04655 -2.7 -5.7 FAD-dependent oxidoreductase compare
MMJJ_RS01565 -2.7 -11.0 TIGR00267 family protein compare
MMJJ_RS08855 -2.7 -6.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS08535 -2.7 -4.6 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05610 -2.7 -5.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08850 -2.7 -3.3 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05380 -2.7 -2.1 hypothetical protein compare
MMJJ_RS04730 -2.7 -3.7 tyrosine decarboxylase MfnA compare
MMJJ_RS06510 -2.7 -3.7 LL-diaminopimelate aminotransferase compare
MMJJ_RS00125 -2.7 -3.1 KEOPS complex subunit Cgi121 compare
MMJJ_RS05490 -2.7 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS04155 -2.7 -7.8 hypothetical protein compare
MMJJ_RS06785 -2.7 -8.8 RNA ligase partner protein compare
MMJJ_RS05070 -2.6 -3.0 DNA primase catalytic subunit PriS compare
MMJJ_RS05995 -2.6 -2.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS07190 -2.6 -5.3 RtcB family protein compare
MMJJ_RS07785 -2.6 -4.0 fumarate reductase subunit A compare
MMJJ_RS06390 -2.6 -2.8 NADPH-dependent F420 reductase compare
MMJJ_RS06155 -2.6 -6.6 phosphatidylglycerophosphatase A compare
MMJJ_RS03115 -2.6 -6.6 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06930 -2.6 -4.2 type II methionyl aminopeptidase compare
MMJJ_RS07945 -2.6 -3.0 4Fe-4S binding protein compare
MMJJ_RS07950 -2.5 -3.3 4Fe-4S binding protein compare
MMJJ_RS07725 -2.5 -7.4 DNA primase DnaG compare
MMJJ_RS07410 -2.5 -4.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04675 -2.5 -6.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS01360 -2.5 -3.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07660 -2.5 -9.2 carbonic anhydrase compare
MMJJ_RS07355 -2.4 -7.2 MoaD/ThiS family protein compare
MMJJ_RS06380 -2.4 -5.0 signal recognition particle protein Srp54 compare
MMJJ_RS08840 -2.4 -5.5 calcium/sodium antiporter compare
MMJJ_RS03800 -2.4 -10.6 aldolase compare
MMJJ_RS09190 -2.4 -2.9 tryptophan synthase subunit beta compare
MMJJ_RS05655 -2.4 -6.5 HisA/HisF family protein compare
MMJJ_RS04970 -2.4 -2.7 DUF655 domain-containing protein compare
MMJJ_RS07245 -2.4 -6.3 amidohydrolase family protein compare
MMJJ_RS03630 -2.4 -13.5 AMP phosphorylase compare
MMJJ_RS05065 -2.4 -4.6 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS05225 -2.4 -2.4 Gar1/Naf1 family protein compare
MMJJ_RS01415 -2.4 -3.6 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07350 -2.4 -4.0 4Fe-4S binding protein compare
MMJJ_RS07470 -2.4 -2.9 50S ribosome-binding GTPase compare
MMJJ_RS04485 -2.4 -8.0 riboflavin synthase compare
MMJJ_RS07635 -2.3 -12.9 response regulator transcription factor compare
MMJJ_RS06905 -2.3 -2.7 hypothetical protein compare
MMJJ_RS06185 -2.3 -5.3 cobalamin biosynthesis protein compare
MMJJ_RS00360 -2.3 -4.0 adenosylhomocysteinase compare
MMJJ_RS06835 -2.3 -11.2 4Fe-4S binding protein compare
MMJJ_RS07640 -2.3 -17.9 cache domain-containing protein compare
MMJJ_RS04995 -2.3 -6.1 Tfx family DNA-binding protein compare
MMJJ_RS08340 -2.3 -4.9 archaeoflavoprotein AfpA compare
MMJJ_RS00370 -2.3 -2.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03660 -2.3 -3.4 DUF447 family protein compare
MMJJ_RS03065 -2.2 -11.3 CBS domain-containing protein compare
MMJJ_RS00205 -2.2 -6.2 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS04875 -2.2 -2.2 tRNA-Lys compare
MMJJ_RS06240 -2.2 -2.4 dihydropteroate synthase-like protein compare
MMJJ_RS00050 -2.2 -10.5 AAA family ATPase compare
MMJJ_RS08660 -2.2 -4.3 acetylornithine transaminase compare
MMJJ_RS05810 -2.2 -7.0 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS07370 -2.2 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS07995 -2.2 -5.9 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS03965 -2.2 -2.3 DNA-directed RNA polymerase subunit L compare
MMJJ_RS08795 -2.2 -3.6 phosphoglucosamine mutase compare
MMJJ_RS01355 -2.1 -3.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS02035 -2.1 -7.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00070 -2.1 -3.8 CooT family nickel-binding protein compare
MMJJ_RS04985 -2.1 -5.1 glutamyl-tRNA reductase compare
MMJJ_RS06225 -2.1 -2.4 adenosylmethionine decarboxylase compare
MMJJ_RS07345 -2.1 -6.2 homocysteine biosynthesis protein compare
MMJJ_RS00195 -2.1 -4.2 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS04595 -2.1 -4.1 hypothetical protein compare
MMJJ_RS00530 -2.1 -11.1 cobalt ECF transporter T component CbiQ compare
MMJJ_RS07650 -2.1 -14.4 formate/nitrite transporter family protein compare
MMJJ_RS07155 -2.1 -8.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06750 -2.1 -3.4 homoaconitase large subunit compare
MMJJ_RS00040 -2.0 -9.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS05190 -2.0 -8.7 gamma carbonic anhydrase family protein compare
MMJJ_RS00060 -2.0 -13.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00035 -2.0 -13.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS02055 -2.0 -11.0 GTP 3',8-cyclase MoaA compare
MMJJ_RS00265 -2.0 -7.0 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS06220 -2.0 -5.8 polyamine aminopropyltransferase compare
MMJJ_RS00600 -2.0 -3.7 hydroxymethylbilane synthase compare
MMJJ_RS00045 -2.0 -10.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS00075 -2.0 -11.1 AAA family ATPase compare
MMJJ_RS05375 -1.9 -13.8 radical SAM protein compare
MMJJ_RS04010 -1.9 -7.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS04670 -1.9 -6.1 DUF2117 domain-containing protein compare
MMJJ_RS06170 -1.9 -7.6 hypothetical protein compare
MMJJ_RS00515 -1.9 -10.6 cobalt transporter CbiM compare
MMJJ_RS06050 -1.9 -8.5 molybdopterin molybdotransferase MoeA compare
MMJJ_RS01880 -1.9 -2.8 RlmE family RNA methyltransferase compare
MMJJ_RS03500 -1.9 -10.7 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS00080 -1.8 -11.3 DUF166 domain-containing protein compare
MMJJ_RS05295 -1.8 -8.0 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06215 -1.8 -4.3 agmatinase compare
MMJJ_RS04980 -1.8 -3.4 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS05765 -1.8 -1.6 flagellar protein E compare
MMJJ_RS06030 -1.8 -5.1 4Fe-4S binding protein compare
MMJJ_RS06865 -1.8 -2.5 NADH-quinone oxidoreductase subunit H compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments