Experiment set3IT041 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium nitrate 100 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_339 -3.1 -2.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2284 -2.3 -4.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_3168 -2.3 -3.4 AmpG permease compare
Pf1N1B4_2959 -2.1 -4.8 FIG067310: hypothetical protein compare
Pf1N1B4_2912 -1.9 -2.5 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3143 -1.9 -2.8 RecA protein compare
Pf1N1B4_2005 -1.9 -2.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1975 -1.8 -2.8 Transcriptional regulator, AsnC family compare
Pf1N1B4_1153 -1.8 -3.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_101 -1.8 -3.0 hypothetical protein compare
Pf1N1B4_2458 -1.8 -3.2 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_3525 -1.8 -2.3 hydrolase, alpha/beta fold family compare
Pf1N1B4_115 -1.7 -2.5 Membrane protein mosC compare
Pf1N1B4_1827 -1.7 -3.5 FIG00953482: hypothetical protein compare
Pf1N1B4_2886 -1.7 -8.5 Paraquat-inducible protein B compare
Pf1N1B4_4531 -1.7 -2.8 FIG01221261: hypothetical protein compare
Pf1N1B4_3864 -1.6 -6.0 Recombination protein RecR compare
Pf1N1B4_2884 -1.6 -4.3 Paraquat-inducible protein A compare
Pf1N1B4_2223 -1.5 -4.0 FIG006231: RNA-binding protein compare
Pf1N1B4_4253 -1.5 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_2208 -1.5 -5.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1749 -1.4 -1.4 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_3595 -1.4 -2.0 Flagellin protein FlaG compare
Pf1N1B4_2734 -1.4 -1.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_224 -1.4 -1.6 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_3742 -1.4 -2.3 Oxidoreductase, zinc-binding compare
Pf1N1B4_2885 -1.4 -4.5 Paraquat-inducible protein A compare
Pf1N1B4_1234 -1.4 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_717 -1.4 -5.4 Iron-regulated protein A precursor compare
Pf1N1B4_337 -1.4 -4.1 O-antigen export system permease protein RfbD compare
Pf1N1B4_5498 -1.3 -2.0 hypothetical protein compare
Pf1N1B4_722 -1.3 -1.8 SAM-dependent methyltransferases compare
Pf1N1B4_335 -1.3 -7.7 Glycosyltransferase compare
Pf1N1B4_188 -1.3 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1446 -1.3 -3.2 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_5342 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_5146 -1.3 -2.3 Chromosome initiation inhibitor compare
Pf1N1B4_2643 -1.3 -2.5 Predicted zinc-binding protein compare
Pf1N1B4_844 -1.3 -3.6 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_2102 -1.3 -1.8 hypothetical protein compare
Pf1N1B4_5851 -1.2 -2.0 Transcriptional regulator, RpiR family compare
Pf1N1B4_3328 -1.2 -1.9 Rhodanese-like domain protein compare
Pf1N1B4_5095 -1.2 -1.5 hypothetical protein compare
Pf1N1B4_2949 -1.2 -2.3 FIG00956396: hypothetical protein compare
Pf1N1B4_3468 -1.2 -2.0 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_5187 -1.2 -1.6 5S RNA compare
Pf1N1B4_644 -1.2 -1.9 Cold shock protein CspC compare
Pf1N1B4_4700 -1.2 -1.9 FIG00956898: hypothetical protein compare
Pf1N1B4_2178 -1.2 -1.8 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_72 -1.2 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_1236 -1.2 -4.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2612 -1.2 -2.9 Putative transport protein compare
Pf1N1B4_2150 -1.2 -2.2 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_4544 -1.2 -1.0 Uncharacterized protein ImpA compare
Pf1N1B4_2943 -1.2 -2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2611 -1.2 -7.8 Excinuclease ABC subunit A compare
Pf1N1B4_1307 -1.2 -1.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4516 -1.1 -2.2 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_373 -1.1 -2.1 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_419 -1.1 -1.7 Transcriptional regulator, TetR family compare
Pf1N1B4_4156 -1.1 -1.7 putative secreted protein compare
Pf1N1B4_3768 -1.1 -2.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_322 -1.1 -2.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_2948 -1.1 -2.0 FIG00954698: hypothetical protein compare
Pf1N1B4_403 -1.1 -1.2 FIG00965925: hypothetical protein compare
Pf1N1B4_1581 -1.1 -1.8 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_3811 -1.1 -2.5 Hydantoin racemase (EC 5.1.99.-) compare
Pf1N1B4_718 -1.1 -4.3 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_26 -1.1 -4.7 Excinuclease ABC subunit B compare
Pf1N1B4_5575 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_974 -1.1 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2485 -1.1 -1.4 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_4657 -1.1 -2.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1464 -1.1 -5.1 Glycosyl transferase compare
Pf1N1B4_3687 -1.1 -2.5 FIG00953885: hypothetical protein compare
Pf1N1B4_4394 -1.0 -2.5 FIG00955080: hypothetical protein compare
Pf1N1B4_4149 -1.0 -3.0 Probable lipoprotein signal peptide compare
Pf1N1B4_981 -1.0 -2.3 UPF0246 protein YaaA compare
Pf1N1B4_4568 -1.0 -1.3 FIG00793915: hypothetical protein compare
Pf1N1B4_688 -1.0 -1.6 FIG00955483: hypothetical protein compare
Pf1N1B4_606 -1.0 -2.0 Iron siderophore sensor protein compare
Pf1N1B4_1388 -1.0 -2.7 Azurin compare
Pf1N1B4_4004 -1.0 -1.8 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_2299 -1.0 -3.0 probable integral membrane protein NMA1899 compare
Pf1N1B4_5618 -1.0 -2.5 Excinuclease ABC subunit C compare
Pf1N1B4_4352 -1.0 -2.1 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_630 -1.0 -3.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_2171 -1.0 -2.3 Tyrosine recombinase XerC compare
Pf1N1B4_4438 -1.0 -1.9 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_1666 -1.0 -3.6 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf1N1B4_1389 -1.0 -2.0 Lysine decarboxylase family compare
Pf1N1B4_3779 -1.0 -1.6 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_193 -1.0 -3.0 Transporter, LysE family compare
Pf1N1B4_4201 -1.0 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_3800 -1.0 -1.9 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_2130 -1.0 -3.9 FIG00953403: hypothetical protein compare
Pf1N1B4_5779 -1.0 -1.9 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_1608 -1.0 -0.9 FIG00956533: hypothetical protein compare
Pf1N1B4_3129 -0.9 -1.4 Prophage baseplate assembly protein V compare
Pf1N1B4_3660 -0.9 -3.6 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_2489 -0.9 -2.6 Biotin synthesis protein BioH compare
Pf1N1B4_4873 -0.9 -2.1 clavaldehyde dehydrogenase compare
Pf1N1B4_2199 -0.9 -3.8 FIG00953537: hypothetical protein compare
Pf1N1B4_1637 -0.9 -1.8 FIG00954739: hypothetical protein compare
Pf1N1B4_2359 -0.9 -2.3 Chemotaxis signal transduction protein compare
Pf1N1B4_1927 -0.9 -4.8 DNA recombination and repair protein RecF compare
Pf1N1B4_4139 -0.9 -1.5 Transcriptional regulator, MerR family compare
Pf1N1B4_2510 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_501 -0.9 -1.4 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_3818 -0.9 -1.7 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_3466 -0.9 -1.3 FIG00955605: hypothetical protein compare
Pf1N1B4_879 -0.9 -2.0 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf1N1B4_336 -0.9 -6.6 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_890 -0.9 -1.8 DNA recombination and repair protein RecO compare
Pf1N1B4_124 -0.9 -1.7 Mechanosensitive ion channel compare
Pf1N1B4_1107 -0.9 -2.8 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_1485 -0.9 -2.3 FIG00963848: hypothetical protein compare
Pf1N1B4_5684 -0.9 -2.4 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_724 -0.9 -2.1 DNA-binding response regulator ColR compare
Pf1N1B4_2131 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_5591 -0.9 -1.4 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_6035 -0.8 -2.2 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_4949 -0.8 -1.8 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_3125 -0.8 -2.4 FIG00954242: hypothetical protein compare
Pf1N1B4_4104 -0.8 -1.8 Probable transmembrane protein compare
Pf1N1B4_5949 -0.8 -1.2 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_2668 -0.8 -5.0 DedA protein compare
Pf1N1B4_5330 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_2060 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_3858 -0.8 -2.5 FIG00954563: hypothetical protein compare
Pf1N1B4_3983 -0.8 -2.1 cI compare
Pf1N1B4_3802 -0.8 -1.5 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_139 -0.8 -1.8 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_5043 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_456 -0.8 -2.7 FIG146278: Maf/YceF/YhdE family protein compare
Pf1N1B4_3443 -0.8 -1.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_750 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_2080 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_4870 -0.8 -1.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_967 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3126 -0.8 -1.9 Phage tail length tape-measure protein compare
Pf1N1B4_2173 -0.8 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_1139 -0.8 -2.3 FOG: TPR repeat, SEL1 subfamily compare
Pf1N1B4_1579 -0.8 -2.1 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_780 -0.8 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_201 -0.8 -1.4 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_680 -0.8 -3.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Pf1N1B4_3303 -0.8 -2.3 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf1N1B4_5837 -0.8 -2.8 Transcriptional regulator, LysR family compare
Pf1N1B4_2944 -0.8 -2.7 FIG00955938: hypothetical protein compare
Pf1N1B4_3965 -0.8 -1.2 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_3986 -0.8 -2.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Pf1N1B4_3692 -0.8 -1.7 Chaperone protein HtpG compare
Pf1N1B4_866 -0.8 -1.3 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_574 -0.8 -1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_237 -0.8 -1.9 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_414 -0.8 -1.9 transcriptional regulator compare
Pf1N1B4_2253 -0.8 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_5815 -0.8 -1.9 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_5439 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_5000 -0.7 -2.0 D-glycerate transporter (predicted) compare
Pf1N1B4_4477 -0.7 -1.7 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_2269 -0.7 -1.4 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_1527 -0.7 -1.9 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_3501 -0.7 -2.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_4671 -0.7 -1.7 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_5762 -0.7 -1.6 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_3399 -0.7 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3309 -0.7 -3.2 Uracil-DNA glycosylase, family 1 compare
Pf1N1B4_4918 -0.7 -1.2 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_984 -0.7 -2.1 Alginate biosynthesis protein Alg44 compare
Pf1N1B4_4133 -0.7 -2.3 Mobile element protein compare
Pf1N1B4_1128 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_4946 -0.7 -1.9 putative aminotransferase compare
Pf1N1B4_6050 -0.7 -1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5827 -0.7 -1.9 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_412 -0.7 -1.1 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_3127 -0.7 -2.0 Phage tail/DNA circulation protein compare
Pf1N1B4_1235 -0.7 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_3364 -0.7 -1.6 Cyn operon transcriptional activator compare
Pf1N1B4_2486 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_4067 -0.7 -2.6 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf1N1B4_4125 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_3885 -0.7 -2.3 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_5576 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_4506 -0.7 -1.7 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_324 -0.7 -1.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_3713 -0.7 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3017 -0.7 -2.4 NAD(FAD)-utilizing enzyme possibly involved in translation compare
Pf1N1B4_3724 -0.7 -2.9 DNA recombination protein RmuC compare
Pf1N1B4_567 -0.7 -1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_1765 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_516 -0.7 -1.5 Sensor histidine kinase compare
Pf1N1B4_2106 -0.7 -1.3 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_4393 -0.7 -1.3 Ferredoxin reductase compare
Pf1N1B4_2981 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_1886 -0.7 -2.3 FIG00956005: hypothetical protein compare
Pf1N1B4_591 -0.7 -2.7 Aldose 1-epimerase compare
Pf1N1B4_3762 -0.7 -2.7 FIG137887: membrane protein related to purine degradation compare
Pf1N1B4_359 -0.7 -1.4 GGDEF domain protein compare


Specific Phenotypes

For 13 genes in this experiment

For stress Sodium nitrate in Pseudomonas fluorescens FW300-N1B4

For stress Sodium nitrate across organisms