Experiment set3IT041 for Pseudomonas fluorescens FW300-N1B4
LB with Sodium nitrate 100 mM
Group: stressMedia: LB + Sodium nitrate (100 mM)
Culturing: pseudo1_N1B4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 26 (C), shaken=orbital
By: Adam on 12/16/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1042 E3,E4
Specific Phenotypes
For 13 genes in this experiment
For stress Sodium nitrate in Pseudomonas fluorescens FW300-N1B4
For stress Sodium nitrate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- Ubiquinone and menaquinone biosynthesis
- Bisphenol A degradation
- Glycerophospholipid metabolism
- alpha-Linolenic acid metabolism
- Glyoxylate and dicarboxylate metabolism
- Benzoate degradation via CoA ligation
- Porphyrin and chlorophyll metabolism
- Limonene and pinene degradation
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
Pathway | #Steps | #Present | #Specific |
---|---|---|---|
siroheme biosynthesis | 4 | 4 | 3 |
factor 430 biosynthesis | 7 | 3 | 3 |
phospholipid remodeling (phosphatidylethanolamine, yeast) | 4 | 2 | 1 |
tRNA processing | 10 | 10 | 2 |
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) | 15 | 13 | 3 |
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) | 13 | 13 | 2 |
photorespiration III | 9 | 6 | 1 |
photorespiration I | 9 | 6 | 1 |
photorespiration II | 10 | 7 | 1 |
adenosylcobalamin biosynthesis I (anaerobic) | 36 | 29 | 3 |
adenosylcobalamin biosynthesis II (aerobic) | 33 | 31 | 2 |