Experiment set3IT041 for Herbaspirillum seropedicae SmR1
Control soil assay; outgrowth in LB
Group: plantMedia: LB + SOIL without plant, pH=7
Culturing: HerbieS_ML4, flask, at 30 (C), shaken=120 rpm
By: Thalita Tuleski on 19-May-16
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 2 genes in this experiment
For plant SOIL without plant in Herbaspirillum seropedicae SmR1
For plant SOIL without plant across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Central meta-cleavage pathway of aromatic compound degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis | 3 | 2 | 1 |
| superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis | 8 | 2 | 1 |