Experiment set3IT040 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium nitrite 10 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1115 -3.6 -12.7 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4038 -3.5 -4.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_769 -3.3 -7.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_971 -3.3 -17.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_1116 -3.1 -13.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_5659 -2.9 -13.6 NfuA Fe-S protein maturation compare
Pf1N1B4_972 -2.9 -21.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_969 -2.9 -24.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_2939 -2.9 -6.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_970 -2.8 -12.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_4030 -2.6 -4.4 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_973 -2.5 -18.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_2386 -2.4 -6.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_1565 -2.4 -4.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1475 -2.4 -8.0 FIG00962376: hypothetical protein compare
Pf1N1B4_58 -2.3 -7.8 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3241 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_1545 -2.3 -10.6 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_4029 -2.2 -3.2 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3447 -2.2 -6.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_4035 -2.1 -3.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4039 -2.1 -7.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_6041 -2.1 -2.3 Carbon storage regulator compare
Pf1N1B4_2209 -2.1 -7.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_262 -2.1 -15.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_652 -2.0 -10.4 Sensory box histidine kinase compare
Pf1N1B4_2352 -1.9 -6.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_5588 -1.9 -3.1 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_683 -1.8 -3.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1568 -1.8 -3.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_2106 -1.7 -3.2 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1403 -1.7 -7.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1057 -1.7 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4857 -1.6 -4.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3143 -1.6 -3.3 RecA protein compare
Pf1N1B4_929 -1.6 -3.1 FIG00964214: hypothetical protein compare
Pf1N1B4_3328 -1.6 -2.4 Rhodanese-like domain protein compare
Pf1N1B4_4612 -1.6 -2.6 FIG00954117: hypothetical protein compare
Pf1N1B4_4028 -1.6 -3.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_5224 -1.5 -3.5 tRNA-Arg-CCT compare
Pf1N1B4_1619 -1.5 -8.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_327 -1.5 -2.1 hypothetical protein compare
Pf1N1B4_2384 -1.5 -9.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_4040 -1.5 -2.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_522 -1.5 -3.3 HlyD family secretion protein compare
Pf1N1B4_4041 -1.5 -3.6 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_1624 -1.5 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3093 -1.5 -2.3 Outer membrane protein H precursor compare
Pf1N1B4_1504 -1.4 -2.6 Acyl carrier protein compare
Pf1N1B4_3525 -1.4 -2.4 hydrolase, alpha/beta fold family compare
Pf1N1B4_1626 -1.4 -6.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5383 -1.4 -8.4 hypothetical protein compare
Pf1N1B4_3990 -1.4 -3.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_1234 -1.4 -3.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_175 -1.4 -2.1 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2114 -1.4 -5.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3833 -1.4 -6.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2858 -1.4 -8.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1462 -1.4 -10.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_1975 -1.4 -1.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_2005 -1.3 -2.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4181 -1.3 -3.0 FIG00957123: hypothetical protein compare
Pf1N1B4_2850 -1.3 -6.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1569 -1.3 -8.8 Twin-arginine translocation protein TatC compare
Pf1N1B4_2244 -1.3 -2.1 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_1069 -1.3 -4.6 YrbA protein compare
Pf1N1B4_2178 -1.3 -2.0 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_2465 -1.2 -2.1 Two-component response regulator CreB compare
Pf1N1B4_2453 -1.2 -1.4 hypothetical protein compare
Pf1N1B4_2969 -1.2 -8.8 ATPase, AFG1 family compare
Pf1N1B4_883 -1.2 -1.9 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2682 -1.2 -1.8 Antiholin-like protein LrgA compare
Pf1N1B4_4839 -1.2 -2.2 lipoprotein compare
Pf1N1B4_1617 -1.2 -5.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2724 -1.2 -5.4 Transcriptional regulator, AsnC family compare
Pf1N1B4_4824 -1.2 -1.9 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_5561 -1.1 -2.8 hypothetical protein compare
Pf1N1B4_886 -1.1 -2.0 FIG137478: Hypothetical protein compare
Pf1N1B4_1627 -1.1 -3.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_501 -1.1 -1.8 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_1554 -1.1 -5.2 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_919 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_4921 -1.1 -2.4 Haloacid dehalogenase, type II compare
Pf1N1B4_583 -1.1 -2.3 FIG00957748: hypothetical protein compare
Pf1N1B4_3364 -1.1 -2.7 Cyn operon transcriptional activator compare
Pf1N1B4_932 -1.1 -0.7 FIG00963370: hypothetical protein compare
Pf1N1B4_1 -1.0 -1.9 Colicin V production protein compare
Pf1N1B4_399 -1.0 -2.0 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_2893 -1.0 -4.9 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_5100 -1.0 -2.3 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_1871 -1.0 -4.8 Zinc uptake regulation protein ZUR compare
Pf1N1B4_1408 -1.0 -3.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2935 -1.0 -1.6 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_3768 -1.0 -1.4 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_1870 -1.0 -2.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2228 -1.0 -3.3 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_960 -1.0 -6.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3906 -1.0 -3.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_6004 -1.0 -3.5 tgtA5 cluster protein 1 compare
Pf1N1B4_1307 -1.0 -1.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1637 -1.0 -1.5 FIG00954739: hypothetical protein compare
Pf1N1B4_2917 -1.0 -5.2 FIG140336: TPR domain protein compare
Pf1N1B4_4596 -1.0 -2.2 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_2232 -1.0 -3.6 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_5804 -1.0 -2.3 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_649 -1.0 -2.8 Small-conductance mechanosensitive channel compare
Pf1N1B4_2768 -1.0 -2.4 DNA repair protein RadA compare
Pf1N1B4_239 -1.0 -2.6 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_2885 -1.0 -3.9 Paraquat-inducible protein A compare
Pf1N1B4_2042 -1.0 -4.4 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_275 -1.0 -1.8 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2643 -1.0 -2.2 Predicted zinc-binding protein compare
Pf1N1B4_4133 -1.0 -2.4 Mobile element protein compare
Pf1N1B4_616 -0.9 -1.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2526 -0.9 -7.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_3413 -0.9 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_5085 -0.9 -3.6 Capsular polysaccharide synthesis enzyme CpsA, sugar transferase compare
Pf1N1B4_414 -0.9 -2.7 transcriptional regulator compare
Pf1N1B4_962 -0.9 -5.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_3081 -0.9 -8.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1566 -0.9 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1878 -0.9 -5.9 Cytochrome c4 compare
Pf1N1B4_339 -0.9 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1236 -0.9 -3.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2035 -0.9 -3.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_1315 -0.9 -5.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2870 -0.9 -1.1 Regulator of competence-specific genes compare
Pf1N1B4_3692 -0.9 -2.1 Chaperone protein HtpG compare
Pf1N1B4_1679 -0.9 -1.3 Membrane-fusion protein compare
Pf1N1B4_2163 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_2912 -0.9 -1.5 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3797 -0.9 -2.7 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_4238 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_384 -0.9 -1.1 proteinase inhibitor compare
Pf1N1B4_5756 -0.9 -2.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_3322 -0.9 -5.4 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_438 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_4139 -0.9 -1.6 Transcriptional regulator, MerR family compare
Pf1N1B4_4960 -0.9 -2.0 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_367 -0.9 -3.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf1N1B4_4729 -0.9 -1.4 Hemolysin-type calcium-binding region compare
Pf1N1B4_5005 -0.8 -2.2 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_5077 -0.8 -1.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_578 -0.8 -2.2 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2006 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_3017 -0.8 -3.3 NAD(FAD)-utilizing enzyme possibly involved in translation compare
Pf1N1B4_4669 -0.8 -1.2 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_763 -0.8 -2.4 Ferric iron ABC transporter, ATP-binding protein compare
Pf1N1B4_5425 -0.8 -1.3 DNA-binding protein HU-beta compare
Pf1N1B4_2105 -0.8 -1.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_6036 -0.8 -1.8 FIG00953132: hypothetical protein compare
Pf1N1B4_324 -0.8 -1.9 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_1661 -0.8 -2.6 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_122 -0.8 -2.1 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_3864 -0.8 -3.3 Recombination protein RecR compare
Pf1N1B4_2886 -0.8 -5.7 Paraquat-inducible protein B compare
Pf1N1B4_644 -0.8 -1.6 Cold shock protein CspC compare
Pf1N1B4_2008 -0.8 -5.2 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_1334 -0.8 -1.3 FIG00955840: hypothetical protein compare
Pf1N1B4_3127 -0.8 -2.5 Phage tail/DNA circulation protein compare
Pf1N1B4_3168 -0.8 -2.3 AmpG permease compare
Pf1N1B4_681 -0.8 -2.5 FOG: GGDEF domain compare
Pf1N1B4_4518 -0.8 -1.5 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_606 -0.8 -1.8 Iron siderophore sensor protein compare
Pf1N1B4_2721 -0.8 -5.0 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_4436 -0.8 -1.7 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_431 -0.8 -2.9 hypothetical protein compare
Pf1N1B4_5955 -0.8 -2.3 Permease of the major facilitator superfamily compare
Pf1N1B4_1590 -0.8 -3.1 Histidine utilization repressor compare
Pf1N1B4_232 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3872 -0.8 -4.6 Putative analog of CcoH, COG3198 compare
Pf1N1B4_539 -0.8 -1.2 Transcriptional regulators compare
Pf1N1B4_3396 -0.8 -1.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2036 -0.8 -2.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_1067 -0.8 -3.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_406 -0.8 -3.7 Purine-cytosine permease compare
Pf1N1B4_4982 -0.8 -1.3 Transcriptional regulator, AraC family compare
Pf1N1B4_2925 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_2144 -0.8 -4.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_3685 -0.8 -2.6 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3126 -0.8 -2.2 Phage tail length tape-measure protein compare
Pf1N1B4_3132 -0.8 -2.2 FIG121501: Prophage tail protein compare
Pf1N1B4_2833 -0.7 -2.1 Benzoate transport protein compare
Pf1N1B4_440 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_656 -0.7 -4.2 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_1042 -0.7 -2.0 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_4051 -0.7 -1.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4166 -0.7 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_3972 -0.7 -2.6 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_3869 -0.7 -5.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_5402 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4307 -0.7 -2.3 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Pf1N1B4_3149 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_3152 -0.7 -3.0 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_355 -0.7 -4.4 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf1N1B4_3290 -0.7 -1.9 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_5084 -0.7 -2.1 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_1317 -0.7 -1.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_4419 -0.7 -1.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_4957 -0.7 -1.4 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Pseudomonas fluorescens FW300-N1B4

For stress Sodium nitrite across organisms