Experiment set3IT040 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_1984 -6.7 -4.4 3-isopropylmalate dehydratase, small subunit compare
Psyr_4581 -6.5 -3.3 anthranilate synthase, component II compare
Psyr_4270 -5.4 -8.2 serine hydroxymethyltransferase compare
Psyr_4609 -5.3 -13.8 anthranilate synthase, component I compare
Psyr_1985 -5.3 -8.8 3-isopropylmalate dehydrogenase compare
Psyr_1269 -4.7 -3.2 phosphoribosylformylglycinamidine synthase compare
Psyr_4580 -4.7 -5.5 anthranilate phosphoribosyltransferase compare
Psyr_0034 -4.6 -7.0 tryptophan synthase, beta chain compare
Psyr_1198 -4.6 -3.9 type III secretion protein HrpF compare
Psyr_1663 -4.5 -6.4 phosphoribosylanthranilate isomerase compare
Psyr_0377 -4.5 -6.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1669 -4.3 -12.3 O-succinylhomoserine sulfhydrylase compare
Psyr_4407 -4.3 -3.0 phosphoribosylamine--glycine ligase compare
Psyr_1212 -4.2 -4.0 type III secretion protein HrpO compare
Psyr_1350 -4.2 -4.8 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1983 -4.1 -6.8 3-isopropylmalate dehydratase, large subunit compare
Psyr_4369 -4.1 -7.5 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0378 -4.0 -10.3 Glycosyl transferase, family 2 compare
Psyr_0474 -4.0 -11.1 homoserine O-acetyltransferase compare
Psyr_1613 -3.9 -3.8 septum site-determining protein MinC compare
Psyr_1056 -3.9 -6.1 Poly(beta-D-mannuronate) lyase compare
Psyr_1614 -3.8 -4.8 lipid A biosynthesis acyltransferase compare
Psyr_3958 -3.8 -12.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_1210 -3.7 -6.9 type III secretion protein HrcQa compare
Psyr_0529 -3.5 -4.8 Glycosyl transferase, group 1 compare
Psyr_1668 -3.5 -7.1 amidophosphoribosyltransferase compare
Psyr_0473 -3.4 -5.5 Methionine biosynthesis MetW compare
Psyr_0025 -3.4 -4.7 shikimate dehydrogenase compare
Psyr_0219 -3.4 -10.8 phosphomannomutase compare
Psyr_1748 -3.4 -8.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0915 -3.3 -13.4 NAD-dependent epimerase/dehydratase compare
Psyr_1213 -3.2 -5.7 type III secretion cytoplasmic ATPase HrcN compare
Psyr_3008 -3.2 -7.6 Undecaprenyl-diphosphatase compare
Psyr_0532 -3.2 -5.7 conserved hypothetical protein compare
Psyr_0033 -3.2 -5.0 tryptophan synthase, alpha chain compare
Psyr_4852 -3.2 -6.9 D-3-phosphoglycerate dehydrogenase compare
Psyr_0826 -3.2 -6.7 glucose-6-phosphate isomerase compare
Psyr_1195 -3.2 -9.3 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
Psyr_0531 -2.9 -2.6 LmbE-like protein compare
Psyr_0704 -2.8 -8.2 glutamate 5-kinase compare
Psyr_0923 -2.8 -6.9 hypothetical protein compare
Psyr_0557 -2.8 -7.4 phosphoserine phosphatase compare
Psyr_2980 -2.7 -5.1 UDP-glucose pyrophosphorylase compare
Psyr_4991 -2.7 -2.6 hypothetical protein compare
Psyr_1190 -2.7 -5.2 type III transcriptional regulator HrpR compare
Psyr_4361 -2.7 -3.8 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_4130 -2.7 -10.2 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_1197 -2.7 -5.9 type III secretion protein HrpE compare
Psyr_4203 -2.6 -2.9 SsrA-binding protein compare
Psyr_1205 -2.6 -7.9 type III secretion protein HrcU compare
Psyr_3179 -2.6 -4.3 DNA translocase FtsK compare
Psyr_4194 -2.5 -6.4 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4683 -2.5 -4.5 dethiobiotin synthase compare
Psyr_1206 -2.4 -5.5 type III secretion protein HrcT compare
Psyr_4687 -2.4 -7.8 biotin synthase compare
Psyr_0827 -2.4 -4.0 pantothenate synthetase compare
Psyr_1257 -2.4 -6.9 2-isopropylmalate synthase compare
Psyr_1215 -2.3 -9.2 Type III secretion protein HrcV compare
Psyr_1408 -2.3 -3.0 Holliday junction endonuclease RuvC compare
Psyr_0846 -2.3 -11.7 acetolactate synthase, large subunit compare
Psyr_1140 -2.3 -4.9 Disulfide bond formation protein DsbB compare
Psyr_0822 -2.3 -1.7 1-phosphofructokinase compare
Psyr_1211 -2.3 -3.3 type III secretion protein HrpP compare
Psyr_1200 -2.2 -8.7 outer-membrane type III secretion protein HrcC compare
Psyr_3637 -2.2 -10.8 Glycosyl transferase, family 4 compare
Psyr_0917 -2.2 -7.1 ABC-2 compare
Psyr_0918 -2.2 -10.6 ABC transporter compare
Psyr_1544 -2.2 -4.3 SirA-like protein compare
Psyr_1208 -2.1 -9.1 type III secretion protein HrcR compare
Psyr_0796 -2.1 -7.2 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A compare
Psyr_4627 -2.1 -3.3 dimethyladenosine transferase compare
Psyr_0014 -2.0 -3.8 lipid A biosynthesis acyltransferase compare
Psyr_0167 -2.0 -1.9 hypothetical protein compare
Psyr_3673 -2.0 -2.3 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_0936 -2.0 -9.5 Glycosyl transferase, group 1 compare
Psyr_1191 -2.0 -6.8 type III transcriptional regulator HrpS compare
Psyr_1373 -2.0 -1.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0919 -2.0 -10.0 Chromosome segregation ATPase-like protein compare
Psyr_3926 -1.9 -3.6 transcriptional regulator, PadR family compare
Psyr_1216 -1.9 -5.9 type III secretion outer membrane protein PopN compare
Psyr_4893 -1.9 -1.7 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1058 -1.9 -8.2 Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis compare
Psyr_1747 -1.9 -4.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_5132 -1.9 -3.3 Glucose-inhibited division protein A subfamily compare
Psyr_0848 -1.9 -7.9 ketol-acid reductoisomerase compare
Psyr_0255 -1.8 -2.4 glutamate-cysteine ligase compare
Psyr_4100 -1.8 -5.5 D-alanine--D-alanine ligase compare
Psyr_0469 -1.8 -8.2 dihydroxyacid dehydratase compare
Psyr_1121 -1.8 -1.8 6-phosphogluconolactonase compare
Psyr_4091 -1.8 -4.7 8-oxo-dGTPase compare
Psyr_1914 -1.7 -6.0 transaldolase compare
Psyr_1859 -1.7 -3.8 conserved hypothetical protein compare
Psyr_3199 -1.7 -3.3 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4019 -1.7 -2.4 H-NS family protein MvaT compare
Psyr_4684 -1.7 -2.6 biotin synthesis protein BioC compare
Psyr_0535 -1.7 -2.1 toluene tolerance protein, putative compare
Psyr_4408 -1.7 -6.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4566 -1.7 -7.6 Peptidase M23B compare
Psyr_0951 -1.7 -3.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4842 -1.7 -5.4 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_1410 -1.6 -3.3 Holliday junction DNA helicase RuvB compare
Psyr_4843 -1.6 -3.3 NUDIX hydrolase compare
Psyr_2557 -1.6 -2.6 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4686 -1.6 -3.7 8-amino-7-oxononanoate synthase compare
Psyr_3554 -1.6 -1.5 Carbon storage regulator compare
Psyr_2823 -1.6 -1.3 hypothetical protein compare
Psyr_0914 -1.6 -7.5 Glycosyl transferase, group 1 compare
Psyr_3644 -1.6 -3.2 prephenate dehydrogenase compare
Psyr_0847 -1.6 -5.6 acetolactate synthase, small subunit compare
Psyr_1401 -1.5 -5.3 Histidine triad (HIT) protein compare
Psyr_0920 -1.5 -10.5 Glycosyl transferase, group 1 compare
Psyr_1953 -1.5 -2.0 conserved hypothetical protein compare
Psyr_0454 -1.5 -3.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4470 -1.5 -3.8 ABC transporter compare
Psyr_1061 -1.5 -4.0 alginate biosynthesis protein Alg44 compare
Psyr_5133 -1.5 -4.1 tRNA modification GTPase trmE compare
Psyr_0528 -1.5 -2.5 Carbamoyltransferase compare
Psyr_3202 -1.5 -1.5 NADH dehydrogenase subunit G compare
Psyr_1059 -1.5 -6.4 alginate export porin compare
Psyr_3684 -1.5 -1.8 NLP/P60 compare
Psyr_3636 -1.4 -7.7 Polysaccharide biosynthesis protein CapD compare
Psyr_1063 -1.4 -8.3 GDP-mannose 6-dehydrogenase compare
Psyr_0435 -1.4 -1.4 membrane protein, putative compare
Psyr_1749 -1.4 -5.7 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_1907 -1.4 -2.4 GTP cyclohydrolase I compare
Psyr_1053 -1.4 -5.4 alginate biosynthesis protein AlgF compare
Psyr_4898 -1.4 -5.9 aromatic amino acid aminotransferase apoenzyme compare
Psyr_0373 -1.4 -2.1 CDS compare
Psyr_4362 -1.4 -2.4 Rare lipoprotein A compare
Psyr_0137 -1.4 -1.4 outer membrane transport energization protein ExbD compare
Psyr_3691 -1.4 -4.0 conserved hypothetical protein compare
Psyr_1968 -1.3 -2.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3000 -1.3 -1.9 methyltransferase, putative compare
Psyr_3208 -1.3 -1.5 NADH dehydrogenase subunit M compare
Psyr_4340 -1.3 -4.9 phosphomethylpyrimidine kinase, putative compare
Psyr_0571 -1.3 -2.8 tRNA isopentenyltransferase compare
Psyr_4018 -1.3 -4.8 Formyltetrahydrofolate deformylase compare
Psyr_2312 -1.3 -0.9 Protein of unknown function DUF24 compare
Psyr_1196 -1.3 -1.0 type III secretion protein HrpD compare
Psyr_0863 -1.3 -4.4 PhnA protein compare
Psyr_2838 -1.2 -2.5 conserved hypothetical protein compare
Psyr_1062 -1.2 -7.0 alginate biosynthesis protein Alg8 compare
Psyr_0831 -1.2 -1.8 Two-component response regulator CbrB compare
Psyr_0168 -1.2 -4.2 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_1055 -1.2 -8.5 Membrane bound O-acyl transferase, MBOAT compare
Psyr_2347 -1.2 -2.4 hypothetical protein compare
Psyr_1024 -1.2 -1.9 Flavodoxin/nitric oxide synthase compare
Psyr_2171 -1.2 -2.5 HpcH/HpaI aldolase compare
Psyr_0215 -1.2 -6.5 Exodeoxyribonuclease III xth compare
Psyr_0555 -1.2 -2.9 Protein of unknown function DUF330 compare
Psyr_2613 -1.2 -4.6 Cyclic peptide transporter compare
Psyr_1251 -1.2 -2.6 quinoprotein compare
Psyr_1645 -1.2 -2.5 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_1217 -1.2 -1.9 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_3213 -1.2 -1.7 Propeptide, PepSY amd peptidase M4 compare
Psyr_3174 -1.2 -3.3 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_0726 -1.2 -4.2 ribosomal large subunit pseudouridine synthase D compare
Psyr_1419 -1.1 -1.9 preQ(0) biosynthesis protein QueC compare
Psyr_0758 -1.1 -8.4 beta-fructofuranosidase compare
Psyr_3480 -1.1 -1.9 Flagellar basal-body rod protein FlgC compare
Psyr_4132 -1.1 -5.1 histidinol phosphate aminotransferase apoenzyme compare
Psyr_3445 -1.1 -2.3 Flagellar biosynthesis protein, FliO compare
Psyr_3886 -1.1 -1.1 methionyl-tRNA synthetase compare
Psyr_2921 -1.1 -1.4 ADP-ribosylglycohydrolase compare
Psyr_5065 -1.1 -4.8 ATP-dependent DNA helicase UvrD compare
Psyr_1057 -1.1 -3.7 alginate biosynthesis protein AlgX compare
Psyr_0372 -1.1 -2.1 CDS compare
Psyr_3142 -1.1 -1.9 general secretion pathway protein N, putative compare
Psyr_0976 -1.1 -3.4 Malate:quinone-oxidoreductase compare
Psyr_3212 -1.1 -4.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3581 -1.1 -3.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_4341 -1.1 -3.9 thiamine-phosphate diphosphorylase compare
Psyr_4015 -1.0 -1.8 conserved domain protein compare
Psyr_1060 -1.0 -5.2 Sel1-like repeat protein compare
Psyr_0534 -1.0 -6.4 membrane protein, putative compare
Psyr_5130 -1.0 -3.9 chromosome segregation ATPase compare
Psyr_3555 -1.0 -1.0 aspartate kinase compare
Psyr_2251 -1.0 -0.9 Phosphonate metabolism PhnG compare
Psyr_2787 -1.0 -1.9 hypothetical protein compare
Psyr_1949 -1.0 -2.9 ABC-3 compare
Psyr_0941 -1.0 -3.7 Conserved hypothetical protein 92 compare
Psyr_1111 -1.0 -1.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1751 -1.0 -2.5 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4140 -1.0 -1.3 Protein of unknown function DUF140 compare
Psyr_1333 -1.0 -3.3 UBA/THIF-type NAD/FAD binding fold protein compare
Psyr_0916 -1.0 -4.8 GDP-mannose 4,6-dehydratase compare
Psyr_4622 -1.0 -2.5 Nucleotidyl transferase compare
Psyr_3293 -1.0 -1.5 UspA compare
Psyr_4115 -1.0 -1.6 phosphoheptose isomerase compare
Psyr_2183 -1.0 -1.6 transcriptional regulator, GntR family compare
Psyr_2501 -0.9 -1.9 Hemerythrin compare
Psyr_3036 -0.9 -1.5 transcriptional regulator, TetR family compare
Psyr_0574 -0.9 -3.0 protease FtsH subunit HflK compare
Psyr_1054 -0.9 -3.9 alginate biosynthesis protein AlgJ compare
Psyr_4299 -0.9 -2.9 transcriptional regulator, AsnC family compare
Psyr_1218 -0.9 -4.9 type III helper protein HrpK1 compare
Psyr_4300 -0.9 -1.2 DNA polymerase III, epsilon subunit compare
Psyr_4884 -0.9 -2.9 Rhodanese-like protein compare
Psyr_3954 -0.9 -2.9 GTP-binding protein LepA compare
Psyr_5090 -0.9 -3.4 ABC transporter compare


Specific Phenotypes

For 5 genes in this experiment