Experiment set3IT040 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS05635 +1.1 7.8 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS01295 +1.0 9.2 hypothetical protein compare
MMP_RS08855 +1.0 8.4 hypothetical protein compare
MMP_RS09055 +1.0 2.0 CAP domain-containing protein compare
MMP_RS01290 +1.0 9.3 class III signal peptide-containing protein compare
MMP_RS06035 +1.0 8.6 glycosyltransferase family 2 protein compare
MMP_RS01310 +1.0 9.0 hypothetical protein compare
MMP_RS01285 +1.0 8.3 hypothetical protein compare
MMP_RS01305 +1.0 9.3 hypothetical protein compare
MMP_RS01280 +1.0 8.3 DUF515 domain-containing protein compare
MMP_RS08860 +1.0 5.4 MinD/ParA family protein compare
MMP_RS07330 +0.9 8.5 membrane protein compare
MMP_RS00240 +0.9 8.4 type II secretion system F family protein compare
MMP_RS01270 +0.9 7.9 prepilin peptidase compare
MMP_RS01315 +0.9 8.7 DUF2341 domain-containing protein compare
MMP_RS08940 +0.9 2.2 MetS family NSS transporter small subunit compare
MMP_RS00250 +0.9 8.2 Flp pilus assembly complex ATPase component TadA compare
MMP_RS01275 +0.9 6.8 class III signal peptide-containing protein compare
MMP_RS08675 +0.9 3.7 class III signal peptide-containing protein compare
MMP_RS00245 +0.9 8.2 type II secretion system F family protein compare
MMP_RS01085 +0.8 2.6 hypothetical protein compare
MMP_RS02605 +0.8 1.1 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS07415 +0.7 4.7 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS08580 +0.7 3.6 flagellin compare
MMP_RS03320 +0.7 2.2 metal-dependent transcriptional regulator compare
MMP_RS01195 +0.7 1.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01790 +0.7 3.4 restriction endonuclease compare
MMP_RS08615 +0.7 1.9 flagellar protein G compare
MMP_RS03125 +0.6 4.4 cell division ATPase MinD compare
MMP_RS09045 +0.6 5.0 class III signal peptide-containing protein compare
MMP_RS07880 +0.6 3.5 AAA family ATPase compare
MMP_RS00570 +0.5 1.4 protein-L-isoaspartate O-methyltransferase compare
MMP_RS05865 +0.5 1.1 hypothetical protein compare
MMP_RS06720 +0.5 3.2 response regulator transcription factor compare
MMP_RS04125 +0.5 2.4 TetR/AcrR family transcriptional regulator compare
MMP_RS00140 +0.5 3.3 DUF192 domain-containing protein compare
MMP_RS04055 +0.5 1.4 hypothetical protein compare
MMP_RS08750 +0.5 1.2 hypothetical protein compare
MMP_RS03080 +0.5 0.8 universal stress protein compare
MMP_RS01870 +0.4 2.2 acyl-CoA dehydratase activase compare
MMP_RS06760 +0.4 1.3 hypothetical protein compare
MMP_RS08225 +0.4 3.1 RimK family alpha-L-glutamate ligase compare
MMP_RS00535 +0.4 1.6 TIGR00375 family protein compare
MMP_RS06325 +0.4 1.0 hypothetical protein compare
MMP_RS01075 +0.4 1.4 hypothetical protein compare
MMP_RS06715 +0.4 3.3 cache domain-containing protein compare
MMP_RS02610 +0.4 2.0 DUF2162 domain-containing protein compare
MMP_RS01675 +0.4 1.1 hypothetical protein compare
MMP_RS02530 +0.4 2.0 type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family compare
MMP_RS01255 +0.4 1.7 amino acid ABC transporter ATP-binding protein compare
MMP_RS08380 +0.4 2.2 phosphatase PAP2 family protein compare
MMP_RS05850 +0.4 1.4 Ldh family oxidoreductase compare
MMP_RS06485 +0.4 0.7 zinc ribbon domain-containing protein compare
MMP_RS08410 +0.4 2.0 DUF169 domain-containing protein compare
MMP_RS08265 +0.4 2.3 rubrerythrin compare
MMP_RS08845 +0.4 2.7 archaellum operon transcriptional activator EarA family protein compare
MMP_RS07800 +0.4 2.1 ATP-binding cassette domain-containing protein compare
MMP_RS07960 +0.4 2.9 sugar phosphate isomerase/epimerase compare
MMP_RS08215 +0.4 1.6 DUF483 domain-containing protein compare
MMP_RS03120 +0.3 1.9 hypothetical protein compare
MMP_RS01110 +0.3 1.0 FmdE family protein compare
MMP_RS01655 +0.3 1.4 DsrE family protein compare
MMP_RS01320 +0.3 1.9 hypothetical protein compare
MMP_RS03340 +0.3 0.4 ABC transporter ATP-binding protein compare
MMP_RS06140 +0.3 1.6 radical SAM protein compare
MMP_RS06710 +0.3 1.9 selenium-binding protein compare
MMP_RS02295 +0.3 2.4 TatD family hydrolase compare
MMP_RS01630 +0.3 2.3 N-glycosylase/DNA lyase compare
MMP_RS01490 +0.3 1.4 tetratricopeptide repeat protein compare
MMP_RS01125 +0.3 1.6 thioredoxin family protein compare
MMP_RS01185 +0.3 2.0 hypothetical protein compare
MMP_RS09035 +0.3 1.1 hypothetical protein compare
MMP_RS06735 +0.3 1.5 class I SAM-dependent rRNA methyltransferase compare
MMP_RS08285 +0.3 2.2 serine/threonine protein kinase compare
MMP_RS01440 +0.3 1.4 NAAT family transporter compare
MMP_RS02870 +0.3 2.0 hypothetical protein compare
MMP_RS02805 +0.3 0.6 HEPN domain-containing protein compare
MMP_RS07890 +0.3 0.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS03490 +0.3 0.8 DUF2115 domain-containing protein compare
MMP_RS05985 +0.3 0.7 hypothetical protein compare
MMP_RS08080 +0.3 1.9 YchF/TatD family DNA exonuclease compare
MMP_RS02255 +0.3 2.1 hypothetical protein compare
MMP_RS07150 +0.3 1.6 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS07905 +0.3 2.0 DUF3343 domain-containing protein compare
MMP_RS08570 +0.3 2.1 coenzyme F420-0:L-glutamate ligase compare
MMP_RS00965 +0.3 0.9 hypothetical protein compare
MMP_RS06095 +0.3 1.6 ABC transporter ATP-binding protein compare
MMP_RS08640 +0.3 2.3 TIM barrel protein compare
MMP_RS06935 +0.3 1.5 protease complex subunit PrcB family protein compare
MMP_RS03625 +0.3 1.4 cell wall-binding protein compare
MMP_RS07685 +0.3 1.7 TIGR01212 family radical SAM protein compare
MMP_RS06090 +0.3 1.3 iron ABC transporter permease compare
MMP_RS06970 +0.3 1.2 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS00690 +0.3 1.5 MBL fold metallo-hydrolase compare
MMP_RS01770 +0.2 1.8 ATP-dependent endonuclease compare
MMP_RS06100 +0.2 1.7 GNAT family N-acetyltransferase compare
MMP_RS07590 +0.2 2.0 hypothetical protein compare
MMP_RS04410 +0.2 0.8 hypothetical protein compare
MMP_RS01765 +0.2 1.2 HIT family protein compare
MMP_RS06555 +0.2 1.1 cupin domain-containing protein compare
MMP_RS01140 +0.2 1.0 molybdate ABC transporter permease subunit compare
MMP_RS06050 +0.2 1.5 ZIP family metal transporter compare
MMP_RS07840 +0.2 1.0 ribonuclease III compare
MMP_RS08455 +0.2 1.3 multiprotein bridging factor aMBF1 compare
MMP_RS08485 +0.2 1.8 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS06385 +0.2 0.9 hypothetical protein compare
MMP_RS07775 +0.2 0.9 alanine dehydrogenase compare
MMP_RS01635 +0.2 1.2 thiamine pyrophosphate-dependent enzyme compare
MMP_RS04990 +0.2 1.4 aquaporin family protein compare
MMP_RS06465 +0.2 1.8 NERD domain-containing protein compare
MMP_RS07550 +0.2 1.3 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS02020 +0.2 1.1 gamma-glutamylcyclotransferase compare
MMP_RS07595 +0.2 1.8 hypothetical protein compare
MMP_RS07835 +0.2 1.1 TldD/PmbA family protein compare
MMP_RS00675 +0.2 0.3 nitroreductase family protein compare
MMP_RS05095 +0.2 1.2 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS08995 +0.2 0.5 hypothetical protein compare
MMP_RS03800 +0.2 1.2 hypothetical protein compare
MMP_RS06070 +0.2 1.8 iron ABC transporter substrate-binding protein compare
MMP_RS04255 +0.2 1.1 coenzyme F420 hydrogenase subunit beta compare
MMP_RS05785 +0.2 1.7 ATP-binding protein compare
MMP_RS08235 +0.2 1.4 hypothetical protein compare
MMP_RS00945 +0.2 0.5 PadR family transcriptional regulator compare
MMP_RS08275 +0.2 1.5 hypothetical protein compare
MMP_RS06560 +0.2 1.6 hypothetical protein compare
MMP_RS08665 +0.2 1.8 hypothetical protein compare
MMP_RS01135 +0.2 1.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS03070 +0.2 1.2 AzlD domain-containing protein compare
MMP_RS02695 +0.2 1.5 formylmethanofuran dehydrogenase subunit A compare
MMP_RS07715 +0.2 1.4 YfcE family phosphodiesterase compare
MMP_RS08770 +0.2 1.5 hypothetical protein compare
MMP_RS02790 +0.2 0.4 class III signal peptide-containing protein compare
MMP_RS06990 +0.2 1.0 CatB-related O-acetyltransferase compare
MMP_RS06700 +0.2 1.4 hypothetical protein compare
MMP_RS05270 +0.2 1.6 PEGA domain-containing protein compare
MMP_RS06665 +0.2 1.3 glycogen/starch synthase compare
MMP_RS06605 +0.2 1.5 DUF5814 domain-containing protein compare
MMP_RS02425 +0.2 1.1 hypothetical protein compare
MMP_RS06655 +0.2 1.3 glycoside hydrolase family 15 protein compare
MMP_RS06445 +0.2 0.9 DUF89 domain-containing protein compare
MMP_RS00955 +0.2 1.6 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS08400 +0.2 0.6 MJ0307 family thioredoxin compare
MMP_RS06175 +0.2 1.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS03220 +0.2 0.8 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS00830 +0.2 0.8 purine phosphoribosyltransferase family protein compare
MMP_RS00090 +0.2 0.8 CoA-binding protein compare
MMP_RS08405 +0.2 1.5 MFS transporter compare
MMP_RS08395 +0.2 0.8 DsrE family protein compare
MMP_RS02735 +0.2 0.9 MBL fold metallo-hydrolase compare
MMP_RS02545 +0.2 0.5 hypothetical protein compare
MMP_RS06115 +0.2 1.3 class II aldolase/adducin family protein compare
MMP_RS04220 +0.2 1.3 queuosine precursor transporter compare
MMP_RS02810 +0.2 1.0 hypothetical protein compare
MMP_RS00930 +0.2 0.9 ABC transporter permease compare
MMP_RS02625 +0.2 1.1 ribonuclease H-like domain-containing protein compare
MMP_RS06300 +0.2 1.1 ABC transporter substrate-binding protein compare
MMP_RS05435 +0.2 1.2 5'/3'-nucleotidase SurE compare
MMP_RS05235 +0.2 1.1 exodeoxyribonuclease III compare
MMP_RS08250 +0.2 1.2 pyruvate kinase compare
MMP_RS05315 +0.2 0.4 hypothetical protein compare
MMP_RS02225 +0.2 1.1 carbohydrate kinase family protein compare
MMP_RS07910 +0.2 1.0 NAD(P)H-hydrate dehydratase compare
MMP_RS08850 +0.2 1.5 hypothetical protein compare
MMP_RS03550 +0.2 0.5 DUF2124 domain-containing protein compare
MMP_RS04730 +0.2 1.3 flavodoxin family protein compare
MMP_RS01300 +0.2 1.5 hypothetical protein compare
MMP_RS03530 +0.2 1.2 tetratricopeptide repeat protein compare
MMP_RS01850 +0.2 0.9 phosphate ABC transporter substrate-binding protein compare
MMP_RS08700 +0.2 1.1 hypothetical protein compare
MMP_RS06600 +0.2 0.4 class III signal peptide-containing protein compare
MMP_RS06545 +0.2 1.1 ferredoxin family protein compare
MMP_RS02630 +0.2 1.0 rubredoxin compare
MMP_RS04610 +0.2 0.7 Dabb family protein compare
MMP_RS02745 +0.2 0.6 hypothetical protein compare
MMP_RS01010 +0.2 1.1 DUF4352 domain-containing protein compare
MMP_RS01495 +0.2 0.9 TraB/GumN family protein compare
MMP_RS04305 +0.2 0.7 hypothetical protein compare
MMP_RS03670 +0.2 1.0 DUF1890 domain-containing protein compare
MMP_RS08480 +0.2 1.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS02260 +0.2 1.0 lactate utilization protein compare
MMP_RS06320 +0.2 0.9 hypothetical protein compare
MMP_RS06910 +0.2 1.1 RlmF-related methyltransferase compare
MMP_RS07805 +0.2 0.8 ABC transporter permease compare
MMP_RS04885 +0.1 1.0 sulfite exporter TauE/SafE family protein compare
MMP_RS01445 +0.1 0.7 hypothetical protein compare
MMP_RS06345 +0.1 1.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02540 +0.1 0.8 DUF2283 domain-containing protein compare
MMP_RS06680 +0.1 1.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02710 +0.1 1.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00710 +0.1 0.6 hypothetical protein compare
MMP_RS02215 +0.1 1.0 ECF transporter S component compare
MMP_RS07900 +0.1 0.4 YeeE/YedE family protein compare
MMP_RS08885 +0.1 1.2 tetratricopeptide repeat protein compare
MMP_RS01180 +0.1 0.5 XTP/dITP diphosphatase compare
MMP_RS02025 +0.1 1.1 DNA-directed DNA polymerase compare
MMP_RS01095 +0.1 0.8 iron ABC transporter permease compare
MMP_RS02385 +0.1 0.9 ATP-binding protein compare
MMP_RS08385 +0.1 0.7 ABC transporter substrate-binding protein compare
MMP_RS01865 +0.1 0.4 GPR1/FUN34/YaaH family transporter compare
MMP_RS02170 +0.1 0.8 CBS domain-containing protein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient t1 Sodium acetate in Methanococcus maripaludis S2

For nutrient t1 Sodium acetate across organisms