Experiment set3IT040 for Methanococcus maripaludis JJ

Compare to:

formate McAA pyroxidine HCl dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -5.8 -17.3 hypothetical protein compare
MMJJ_RS06625 -5.3 -3.1 pyruvate synthase subunit PorB compare
MMJJ_RS02045 -5.3 -4.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04200 -5.2 -7.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06860 -5.1 -5.2 hypothetical protein compare
MMJJ_RS03270 -4.9 -3.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05450 -4.9 -18.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS05650 -4.8 -3.3 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS03055 -4.8 -4.0 hypothetical protein compare
MMJJ_RS04970 -4.7 -2.7 DUF655 domain-containing protein compare
MMJJ_RS06240 -4.7 -4.4 dihydropteroate synthase-like protein compare
MMJJ_RS00275 -4.7 -3.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03110 -4.5 -5.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS04485 -4.5 -10.0 riboflavin synthase compare
MMJJ_RS01600 -4.4 -4.2 radical SAM protein compare
MMJJ_RS06695 -4.4 -4.4 amidohydrolase compare
MMJJ_RS08250 -4.3 -8.6 hydrogenase maturation peptidase HycI compare
MMJJ_RS01935 -4.3 -5.8 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06040 -4.2 -5.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03190 -4.2 -2.9 phosphopyruvate hydratase compare
MMJJ_RS00270 -4.1 -5.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS05590 -4.1 -3.2 homoserine dehydrogenase compare
MMJJ_RS03895 -4.1 -4.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS03095 -4.0 -3.5 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06390 -4.0 -2.8 NADPH-dependent F420 reductase compare
MMJJ_RS02090 -4.0 -7.9 tyramine--L-glutamate ligase compare
MMJJ_RS01755 -3.9 -2.7 ferrous iron transport protein B compare
MMJJ_RS05575 -3.9 -6.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07670 -3.9 -18.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06490 -3.8 -4.5 methanogenesis marker 2 protein compare
MMJJ_RS04995 -3.8 -8.0 Tfx family DNA-binding protein compare
MMJJ_RS07665 -3.8 -22.5 formate dehydrogenase subunit alpha compare
MMJJ_RS05535 -3.8 -15.0 hypothetical protein compare
MMJJ_RS06750 -3.8 -3.2 homoaconitase large subunit compare
MMJJ_RS05950 -3.8 -4.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS06155 -3.8 -7.5 phosphatidylglycerophosphatase A compare
MMJJ_RS03670 -3.7 -6.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05445 -3.7 -3.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07655 -3.7 -15.8 hypothetical protein compare
MMJJ_RS07000 -3.7 -2.8 TrkH family potassium uptake protein compare
MMJJ_RS07720 -3.7 -3.4 UPF0058 family protein compare
MMJJ_RS08020 -3.7 -9.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08625 -3.6 -8.6 magnesium/cobalt transporter CorA compare
MMJJ_RS04475 -3.6 -6.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06875 -3.6 -4.1 hypothetical protein compare
MMJJ_RS04685 -3.5 -11.8 carbamoyltransferase HypF compare
MMJJ_RS00370 -3.5 -2.8 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05260 -3.5 -9.2 ATP-grasp domain-containing protein compare
MMJJ_RS09175 -3.5 -2.0 anthranilate synthase component I compare
MMJJ_RS06840 -3.5 -5.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06375 -3.5 -6.5 UbiX family flavin prenyltransferase compare
MMJJ_RS03840 -3.5 -5.7 DHH family phosphoesterase compare
MMJJ_RS08080 -3.5 -12.8 TIGR00300 family protein compare
MMJJ_RS05225 -3.4 -1.9 Gar1/Naf1 family protein compare
MMJJ_RS00210 -3.4 -3.5 DUF530 family protein compare
MMJJ_RS04730 -3.4 -4.0 tyrosine decarboxylase MfnA compare
MMJJ_RS05620 -3.4 -6.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03760 -3.4 -4.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS01870 -3.4 -2.9 methanogenesis marker 15 protein compare
MMJJ_RS03875 -3.4 -5.1 CBS domain-containing protein compare
MMJJ_RS03200 -3.4 -3.2 uroporphyrinogen-III synthase compare
MMJJ_RS06255 -3.4 -8.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05490 -3.3 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03615 -3.3 -3.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00560 -3.3 -4.4 homoisocitrate dehydrogenase compare
MMJJ_RS03125 -3.3 -6.5 GMC oxidoreductase compare
MMJJ_RS07360 -3.3 -2.2 TIGR00269 family protein compare
MMJJ_RS04050 -3.3 -2.8 dihydroneopterin aldolase family protein compare
MMJJ_RS03660 -3.3 -5.3 DUF447 family protein compare
MMJJ_RS05935 -3.2 -3.4 Era-like GTP-binding protein compare
MMJJ_RS08320 -3.2 -4.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00355 -3.2 -5.0 ribonuclease P protein component 4 compare
MMJJ_RS04675 -3.2 -9.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS08330 -3.2 -4.8 SufD family Fe-S cluster assembly protein compare
MMJJ_RS01345 -3.2 -5.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS07190 -3.2 -6.0 RtcB family protein compare
MMJJ_RS06180 -3.1 -4.2 tryptophan--tRNA ligase compare
MMJJ_RS03820 -3.1 -5.9 hydrogenase formation protein HypD compare
MMJJ_RS01360 -3.1 -3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06725 -3.1 -12.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03580 -3.1 -3.8 TIGR00303 family protein compare
MMJJ_RS04155 -3.1 -8.1 hypothetical protein compare
MMJJ_RS05720 -3.1 -4.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06785 -3.1 -8.0 RNA ligase partner protein compare
MMJJ_RS07380 -3.1 -11.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS02920 -3.1 -2.9 30S ribosomal protein S27ae compare
MMJJ_RS00520 -3.0 -8.0 PDGLE domain-containing protein compare
MMJJ_RS06910 -3.0 -4.7 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS08000 -3.0 -8.7 HesA/MoeB/ThiF family protein compare
MMJJ_RS07950 -3.0 -3.7 4Fe-4S binding protein compare
MMJJ_RS04800 -3.0 -7.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03620 -3.0 -5.8 DUF2097 domain-containing protein compare
MMJJ_RS04975 -3.0 -2.8 glycosyltransferase family 4 protein compare
MMJJ_RS06485 -3.0 -4.1 phosphoglycerate kinase compare
MMJJ_RS05610 -2.9 -6.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04565 -2.9 -4.4 sirohydrochlorin nickelochelatase compare
MMJJ_RS01475 -2.9 -3.2 signal recognition particle-docking protein FtsY compare
MMJJ_RS03150 -2.9 -7.8 2-phospho-L-lactate transferase compare
MMJJ_RS06510 -2.8 -4.3 LL-diaminopimelate aminotransferase compare
MMJJ_RS03065 -2.8 -11.4 CBS domain-containing protein compare
MMJJ_RS05930 -2.8 -2.9 cell division protein SepF compare
MMJJ_RS05190 -2.8 -9.0 gamma carbonic anhydrase family protein compare
MMJJ_RS03830 -2.8 -12.1 CBS domain-containing protein compare
MMJJ_RS07275 -2.7 -4.0 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS07660 -2.7 -11.1 carbonic anhydrase compare
MMJJ_RS06915 -2.7 -12.6 helix-turn-helix domain-containing protein compare
MMJJ_RS08005 -2.7 -16.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07995 -2.7 -7.6 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS04790 -2.7 -4.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06185 -2.7 -6.5 cobalamin biosynthesis protein compare
MMJJ_RS00580 -2.7 -2.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03865 -2.7 -2.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05810 -2.6 -6.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS07410 -2.6 -5.7 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08855 -2.6 -6.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS05995 -2.6 -2.8 ATP-binding cassette domain-containing protein compare
MMJJ_RS00450 -2.6 -2.3 DUF126 domain-containing protein compare
MMJJ_RS00195 -2.6 -5.4 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS08055 -2.6 -5.8 methanogenesis marker 14 protein compare
MMJJ_RS08660 -2.6 -3.9 acetylornithine transaminase compare
MMJJ_RS04875 -2.6 -2.2 tRNA-Lys compare
MMJJ_RS08095 -2.6 -5.6 cobyric acid synthase CobQ compare
MMJJ_RS08840 -2.6 -6.2 calcium/sodium antiporter compare
MMJJ_RS00045 -2.6 -16.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03295 -2.6 -16.1 PHP domain-containing protein compare
MMJJ_RS07945 -2.5 -4.4 4Fe-4S binding protein compare
MMJJ_RS03800 -2.5 -11.8 aldolase compare
MMJJ_RS01865 -2.5 -7.2 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS06930 -2.5 -3.4 type II methionyl aminopeptidase compare
MMJJ_RS01200 -2.5 -3.2 PRC-barrel domain-containing protein compare
MMJJ_RS03005 -2.5 -4.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06835 -2.5 -13.5 4Fe-4S binding protein compare
MMJJ_RS02275 -2.5 -5.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05330 -2.5 -2.7 DNA polymerase II large subunit compare
MMJJ_RS03785 -2.5 -3.0 hypothetical protein compare
MMJJ_RS00050 -2.4 -10.6 AAA family ATPase compare
MMJJ_RS07345 -2.4 -6.3 homocysteine biosynthesis protein compare
MMJJ_RS00530 -2.4 -12.3 cobalt ECF transporter T component CbiQ compare
MMJJ_RS01565 -2.4 -8.7 TIGR00267 family protein compare
MMJJ_RS00475 -2.4 -1.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS01750 -2.4 -2.4 ferrous iron transport protein A compare
MMJJ_RS05770 -2.4 -2.3 flagellar protein D compare
MMJJ_RS00425 -2.4 -4.8 hypothetical protein compare
MMJJ_RS01880 -2.4 -3.3 RlmE family RNA methyltransferase compare
MMJJ_RS05360 -2.4 -7.0 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS09375 -2.3 -2.2 hypothetical protein compare
MMJJ_RS00040 -2.3 -11.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS05655 -2.3 -6.6 HisA/HisF family protein compare
MMJJ_RS06805 -2.3 -3.1 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS01690 -2.3 -3.2 methanogenesis marker 12 protein compare
MMJJ_RS05375 -2.3 -15.1 radical SAM protein compare
MMJJ_RS00570 -2.3 -2.0 ribonuclease P compare
MMJJ_RS00215 -2.3 -2.6 CCA tRNA nucleotidyltransferase compare
MMJJ_RS00055 -2.3 -9.1 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS06215 -2.2 -5.1 agmatinase compare
MMJJ_RS02055 -2.2 -12.0 GTP 3',8-cyclase MoaA compare
MMJJ_RS07635 -2.2 -15.0 response regulator transcription factor compare
MMJJ_RS06855 -2.2 -1.2 DUF2104 domain-containing protein compare
MMJJ_RS00205 -2.2 -5.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06110 -2.2 -2.6 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS07640 -2.2 -16.8 cache domain-containing protein compare
MMJJ_RS00515 -2.2 -10.7 cobalt transporter CbiM compare
MMJJ_RS07370 -2.2 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS00065 -2.2 -10.0 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00070 -2.2 -4.5 CooT family nickel-binding protein compare
MMJJ_RS00600 -2.2 -2.7 hydroxymethylbilane synthase compare
MMJJ_RS03630 -2.2 -10.5 AMP phosphorylase compare
MMJJ_RS04010 -2.2 -8.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS00060 -2.2 -15.3 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS08620 -2.1 -3.5 DUF373 family protein compare
MMJJ_RS05295 -2.1 -9.3 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS00035 -2.1 -14.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00075 -2.1 -11.4 AAA family ATPase compare
MMJJ_RS08535 -2.1 -3.3 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04985 -2.1 -4.5 glutamyl-tRNA reductase compare
MMJJ_RS00360 -2.1 -3.3 adenosylhomocysteinase compare
MMJJ_RS00080 -2.1 -12.3 DUF166 domain-containing protein compare
MMJJ_RS03160 -2.1 -12.1 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07155 -2.1 -8.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06730 -2.1 -6.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS04595 -2.0 -6.0 hypothetical protein compare
MMJJ_RS07350 -2.0 -3.4 4Fe-4S binding protein compare
MMJJ_RS09135 -2.0 -8.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS07785 -2.0 -2.8 fumarate reductase subunit A compare
MMJJ_RS09190 -2.0 -2.3 tryptophan synthase subunit beta compare
MMJJ_RS01810 -2.0 -2.5 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS07415 -2.0 -3.4 polyprenyl diphosphate synthase compare
MMJJ_RS04110 -2.0 -5.2 hypothetical protein compare
MMJJ_RS04615 -2.0 -5.2 methanogenesis marker 3 protein compare
MMJJ_RS08340 -2.0 -4.2 archaeoflavoprotein AfpA compare
MMJJ_RS04520 -1.9 -5.0 coenzyme F430 synthase compare
MMJJ_RS03060 -1.9 -2.3 methanogenesis marker 7 protein compare
MMJJ_RS07705 -1.9 -3.7 GTP-binding protein EngB compare
MMJJ_RS05380 -1.9 -1.8 hypothetical protein compare
MMJJ_RS03115 -1.9 -6.2 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS02935 -1.9 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS06700 -1.9 -3.6 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS08325 -1.9 -2.4 glycosyltransferase family 2 protein compare
MMJJ_RS04670 -1.9 -4.2 DUF2117 domain-containing protein compare
MMJJ_RS01785 -1.9 -1.7 50S ribosomal protein L14e compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments