Experiment set3IT040 for Bacteroides thetaiotaomicron VPI-5482
Hyaluronic acid sodium salt from Streptococcus equi
Group: carbon sourceMedia: Varel_Bryant_medium + Hyaluronic acid sodium salt from Streptococcus equi (5 mg/ml)
Culturing: Btheta_ML6, 24-well transparent microplate, Anaerobic, at 37 (C), shaken=0 rpm
By: Hualan on 17-Aug-17
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 35 genes in this experiment
For carbon source Hyaluronic acid sodium salt from Streptococcus equi across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Nucleotide sugars metabolism
- Fructose and mannose metabolism
- Ascorbate and aldarate metabolism
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Polyketide sugar unit biosynthesis
- Lipopolysaccharide biosynthesis
- Sphingolipid metabolism
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Biosynthesis of unsaturated fatty acids
- Pentose and glucuronate interconversions
- Fatty acid biosynthesis
- C21-Steroid hormone metabolism
- Glycine, serine and threonine metabolism
- Methionine metabolism
- Cysteine metabolism
- Lysine biosynthesis
- Lysine degradation
- Arginine and proline metabolism
- Tyrosine metabolism
- Benzoate degradation via hydroxylation
- Bisphenol A degradation
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Starch and sucrose metabolism
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Aminosugars metabolism
- Keratan sulfate biosynthesis
- Peptidoglycan biosynthesis
- Glycerolipid metabolism
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Glycerophospholipid metabolism
- Linoleic acid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- 1- and 2-Methylnaphthalene degradation
- Tetrachloroethene degradation
- Retinol metabolism
- Porphyrin and chlorophyll metabolism
- Limonene and pinene degradation
- Carotenoid biosynthesis - General
- Zeatin biosynthesis
- Sulfur metabolism
- Caprolactam degradation
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Flavone and flavonol biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of type II polyketide backbone
- Biosynthesis of type II polyketide products
- Biosynthesis of alkaloids derived from shikimate pathway
- T cell receptor signaling pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: